Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47113 * 269.99853 * 3 2 1 5 5 H 1.48504 * 109.47405 * 29.99666 * 3 2 1 6 6 H 1.48505 * 109.47387 * 149.99655 * 3 2 1 7 7 C 1.37878 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00317 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99979 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47427 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47299 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.52369 * 59.86921 * 12 11 10 14 14 O 1.20823 * 119.99950 * 0.13097 * 13 12 11 15 15 O 1.34228 * 120.00111 * 180.12611 * 13 12 11 16 16 C 1.53117 * 109.52353 * 179.97438 * 12 11 10 17 17 C 1.53044 * 109.27792 * 177.62341 * 16 12 11 18 18 N 1.46847 * 109.51335 * 300.82256 * 17 16 12 19 19 C 1.46830 * 111.21086 * 61.74856 * 18 17 16 20 20 C 1.53038 * 109.51757 * 298.25173 * 19 18 17 21 21 H 0.96992 * 120.00138 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47056 * 60.00018 * 9 7 2 23 23 H 1.08996 * 109.47183 * 300.00637 * 9 7 2 24 24 H 1.08992 * 109.47203 * 59.99847 * 10 9 7 25 25 H 1.08999 * 109.46970 * 299.99870 * 10 9 7 26 26 H 1.09002 * 109.47291 * 59.99670 * 11 10 9 27 27 H 1.09003 * 109.47275 * 299.99575 * 11 10 9 28 28 H 0.96703 * 117.00352 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.50874 * 57.68521 * 16 12 11 30 30 H 1.09000 * 109.50461 * 297.56042 * 16 12 11 31 31 H 1.09002 * 109.46396 * 60.83566 * 17 16 12 32 32 H 1.08994 * 109.46485 * 180.81491 * 17 16 12 33 33 H 1.00904 * 111.00225 * 185.83346 * 18 17 16 34 34 H 1.08995 * 109.46742 * 178.23410 * 19 18 17 35 35 H 1.09004 * 109.45381 * 58.25744 * 19 18 17 36 36 H 1.08997 * 109.50308 * 299.23764 * 20 19 18 37 37 H 1.09000 * 109.50697 * 179.11489 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 6 5.5583 -4.7915 -1.2260 14 8 4.8645 -4.2053 -2.0227 15 8 5.8809 -6.0775 -1.4355 16 6 7.5928 -4.0803 0.0033 17 6 8.0968 -5.5241 0.0638 18 7 7.5883 -6.1706 1.2802 19 6 6.1209 -6.2236 1.2800 20 6 5.5579 -4.8007 1.2558 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6804 -0.8887 24 1 3.6586 -3.1501 -0.8892 25 1 3.6579 -3.1505 0.8907 26 1 5.9142 -2.1229 0.8927 27 1 5.9156 -2.1224 -0.8873 28 1 5.5349 -6.4919 -2.2378 29 1 7.9569 -3.5312 0.8717 30 1 7.9575 -3.6054 -0.9075 31 1 7.7438 -6.0689 -0.8118 32 1 9.1866 -5.5280 0.0789 33 1 7.9831 -7.0925 1.3919 34 1 5.7757 -6.7355 2.1782 35 1 5.7773 -6.7651 0.3985 36 1 5.8900 -4.2629 2.1437 37 1 4.4688 -4.8405 1.2397 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821979566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -105.728182 kcal Electronic energy + Delta-G solvation = -18263.049026 eV Core-core repulsion = 15425.524388 eV Total energy + Delta-G solvation = -2837.524638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03508 -37.99635 -36.46068 -34.65069 -32.91049 -31.23996 -30.82093 -27.43645 -24.81732 -23.55166 -22.93423 -21.23674 -19.85976 -19.44146 -17.97947 -16.75287 -16.58717 -15.97551 -15.46770 -14.37800 -14.33118 -14.22084 -13.95397 -13.59712 -13.12715 -12.99733 -12.51722 -12.26439 -11.86059 -11.79871 -11.75082 -11.49601 -11.06817 -10.97884 -10.70098 -10.62187 -10.26842 -10.09203 -9.75960 -9.39968 -9.29903 -9.03683 -8.44918 -8.44398 -5.95758 -3.92314 2.36307 3.07973 3.37062 3.43348 3.47970 4.17460 4.53167 4.62087 4.65194 4.82705 5.16427 5.24418 5.38689 5.41313 5.42373 5.57198 5.69848 5.75273 5.82073 5.87898 6.03439 6.06459 6.16152 6.32832 6.38873 6.51235 6.72901 6.86097 6.93522 7.11481 7.27969 7.46893 7.60723 7.90137 8.04840 8.65083 9.10135 9.67583 11.18163 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039217 B = 0.005662 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.813761 B = 4943.845816 C = 5052.219342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.116 4.116 11 C -0.103 4.103 12 C -0.045 4.045 13 C 0.479 3.521 14 O -0.491 6.491 15 O -0.514 6.514 16 C -0.106 4.106 17 C 0.046 3.954 18 N -0.687 5.687 19 C 0.045 3.955 20 C -0.108 4.108 21 H 0.261 0.739 22 H 0.012 0.988 23 H 0.010 0.990 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.395 0.605 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.432 -13.444 0.619 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.088 0.912 9 C -0.049 4.049 10 C -0.153 4.153 11 C -0.140 4.140 12 C -0.046 4.046 13 C 0.321 3.679 14 O -0.376 6.376 15 O -0.328 6.328 16 C -0.144 4.144 17 C -0.083 4.083 18 N -0.318 5.318 19 C -0.084 4.084 20 C -0.145 4.145 21 H 0.071 0.929 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.254 0.746 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.252 -12.383 1.121 21.265 hybrid contribution -0.108 0.015 -1.233 1.238 sum 17.144 -12.367 -0.112 21.139 Atomic orbital electron populations 1.69923 1.06296 1.26710 1.51779 1.25042 0.94724 0.99150 0.94758 0.86764 0.80348 0.83633 0.78450 1.20375 1.21501 1.19014 1.21180 0.89722 0.94323 1.50030 0.91230 1.19533 0.96960 0.92513 0.95877 1.21762 0.91302 1.00273 1.01994 1.21686 0.99020 0.90998 1.02331 1.20779 0.96637 0.96617 0.90599 1.23646 0.77220 0.79459 0.87581 1.90744 1.34376 1.66539 1.45943 1.84773 1.72128 1.27913 1.47946 1.21669 0.92284 0.97308 1.03151 1.22159 0.99066 0.94880 0.92202 1.60306 1.07311 1.25430 1.38749 1.22202 0.87753 0.96968 1.01487 1.21717 1.01076 0.95344 0.96399 0.92891 0.96958 0.97208 0.90619 0.93120 0.90973 0.91640 0.74604 0.89577 0.91286 0.92664 0.91173 0.84379 0.90973 0.92615 0.89551 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.04 13.96 55.43 0.77 -28.27 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.51 -15.47 9.66 -34.44 -0.33 -15.80 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 10 C -0.12 -2.45 4.49 -26.73 -0.12 -2.57 16 11 C -0.10 -1.71 3.92 -26.73 -0.10 -1.81 16 12 C -0.05 -0.61 0.53 -155.54 -0.08 -0.69 16 13 C 0.48 6.88 6.55 36.01 0.24 7.12 16 14 O -0.49 -9.08 14.42 -18.75 -0.27 -9.35 16 15 O -0.51 -5.35 7.71 -39.25 -0.30 -5.66 16 16 C -0.11 -1.18 4.87 -26.65 -0.13 -1.31 16 17 C 0.05 0.44 6.29 -3.83 -0.02 0.42 16 18 N -0.69 -6.65 6.84 -113.83 -0.78 -7.43 16 19 C 0.04 0.47 6.29 -3.84 -0.02 0.45 16 20 C -0.11 -1.36 4.46 -26.65 -0.12 -1.48 16 21 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 22 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 23 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 24 H 0.08 1.74 5.52 -51.93 -0.29 1.45 16 25 H 0.05 1.04 6.50 -51.93 -0.34 0.70 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 28 H 0.40 2.71 9.10 45.56 0.41 3.12 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.54 5.41 -51.93 -0.28 0.26 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.34 2.64 8.90 -39.29 -0.35 2.29 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.60 5.40 -51.93 -0.28 0.32 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.11 6.58 -51.93 -0.34 0.77 16 LS Contribution 283.18 15.07 4.27 4.27 Total: -1.00 -34.44 283.18 -6.66 -41.11 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.77 Total: 1.61 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.91 Total: -14.26 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.01 Total: -35.69 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.57 Total: -15.01 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.44 -6.66 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821979566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.620 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds