Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47113 * 269.99853 * 3 2 1 5 5 H 1.48504 * 109.47405 * 29.99666 * 3 2 1 6 6 H 1.48505 * 109.47387 * 149.99655 * 3 2 1 7 7 C 1.37878 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00317 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99979 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47427 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47299 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.52369 * 59.86921 * 12 11 10 14 14 O 1.20823 * 119.99950 * 0.13097 * 13 12 11 15 15 O 1.34228 * 120.00111 * 180.12611 * 13 12 11 16 16 C 1.53117 * 109.52353 * 179.97438 * 12 11 10 17 17 C 1.53044 * 109.27792 * 177.62341 * 16 12 11 18 18 N 1.46847 * 109.51335 * 300.82256 * 17 16 12 19 19 C 1.46830 * 111.21086 * 61.74856 * 18 17 16 20 20 C 1.53038 * 109.51757 * 298.25173 * 19 18 17 21 21 H 0.96992 * 120.00138 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47056 * 60.00018 * 9 7 2 23 23 H 1.08996 * 109.47183 * 300.00637 * 9 7 2 24 24 H 1.08992 * 109.47203 * 59.99847 * 10 9 7 25 25 H 1.08999 * 109.46970 * 299.99870 * 10 9 7 26 26 H 1.09002 * 109.47291 * 59.99670 * 11 10 9 27 27 H 1.09003 * 109.47275 * 299.99575 * 11 10 9 28 28 H 0.96703 * 117.00352 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.50874 * 57.68521 * 16 12 11 30 30 H 1.09000 * 109.50461 * 297.56042 * 16 12 11 31 31 H 1.09002 * 109.46396 * 60.83566 * 17 16 12 32 32 H 1.08994 * 109.46485 * 180.81491 * 17 16 12 33 33 H 1.00904 * 111.00225 * 185.83346 * 18 17 16 34 34 H 1.08995 * 109.46742 * 178.23410 * 19 18 17 35 35 H 1.09004 * 109.45381 * 58.25744 * 19 18 17 36 36 H 1.08997 * 109.50308 * 299.23764 * 20 19 18 37 37 H 1.09000 * 109.50697 * 179.11489 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 6 5.5583 -4.7915 -1.2260 14 8 4.8645 -4.2053 -2.0227 15 8 5.8809 -6.0775 -1.4355 16 6 7.5928 -4.0803 0.0033 17 6 8.0968 -5.5241 0.0638 18 7 7.5883 -6.1706 1.2802 19 6 6.1209 -6.2236 1.2800 20 6 5.5579 -4.8007 1.2558 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6804 -0.8887 24 1 3.6586 -3.1501 -0.8892 25 1 3.6579 -3.1505 0.8907 26 1 5.9142 -2.1229 0.8927 27 1 5.9156 -2.1224 -0.8873 28 1 5.5349 -6.4919 -2.2378 29 1 7.9569 -3.5312 0.8717 30 1 7.9575 -3.6054 -0.9075 31 1 7.7438 -6.0689 -0.8118 32 1 9.1866 -5.5280 0.0789 33 1 7.9831 -7.0925 1.3919 34 1 5.7757 -6.7355 2.1782 35 1 5.7773 -6.7651 0.3985 36 1 5.8900 -4.2629 2.1437 37 1 4.4688 -4.8405 1.2397 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821979566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -131.813768 kcal Electronic energy + Delta-G solvation = -18264.180182 eV Core-core repulsion = 15425.524388 eV Total energy + Delta-G solvation = -2838.655794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.12007 -38.99416 -37.58520 -36.13901 -34.73059 -32.88009 -31.79404 -29.09826 -26.09312 -24.88117 -24.03034 -22.53222 -21.50681 -20.47935 -19.04569 -18.87862 -17.59417 -17.03676 -16.64418 -16.30901 -15.59109 -15.25572 -14.97822 -14.83314 -14.78908 -14.26289 -14.08642 -13.61938 -13.29014 -13.02478 -12.90531 -12.77496 -12.62079 -12.45494 -12.04646 -11.84711 -11.76535 -11.49125 -11.46137 -11.15216 -10.94135 -10.88775 -10.74576 -9.20116 -8.30620 -6.34562 1.23786 1.33983 1.36294 1.48974 2.09705 2.35743 3.04496 3.42635 3.56327 3.66131 3.82136 4.28801 4.31245 4.36941 4.48063 4.48752 4.59771 4.71573 4.76987 4.88498 4.96438 5.00963 5.07076 5.09795 5.11731 5.20496 5.25360 5.44462 5.49409 5.61721 5.67152 5.80166 6.15611 6.29244 6.63936 6.72773 7.03113 7.29723 8.86843 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039217 B = 0.005662 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.813761 B = 4943.845816 C = 5052.219342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.533 4.533 8 H 0.024 0.976 9 C -0.009 4.009 10 C -0.108 4.108 11 C -0.096 4.096 12 C -0.045 4.045 13 C 0.485 3.515 14 O -0.541 6.541 15 O -0.497 6.497 16 C -0.103 4.103 17 C 0.048 3.952 18 N -0.688 5.688 19 C 0.050 3.950 20 C -0.108 4.108 21 H 0.266 0.734 22 H 0.023 0.977 23 H 0.010 0.990 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.413 0.587 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.353 0.647 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.429 -13.405 1.197 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.571 4.571 8 H 0.042 0.958 9 C -0.046 4.046 10 C -0.145 4.145 11 C -0.133 4.133 12 C -0.046 4.046 13 C 0.329 3.671 14 O -0.430 6.430 15 O -0.311 6.311 16 C -0.140 4.140 17 C -0.081 4.081 18 N -0.320 5.320 19 C -0.079 4.079 20 C -0.145 4.145 21 H 0.075 0.925 22 H 0.042 0.958 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.275 0.725 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.172 0.828 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.279 -12.403 1.705 23.832 hybrid contribution -1.121 -0.131 -1.427 1.819 sum 19.158 -12.534 0.278 22.896 Atomic orbital electron populations 1.70081 1.08377 1.28195 1.52873 1.26096 0.95709 1.03756 0.94016 0.85587 0.79637 0.77825 0.79171 1.19427 1.20531 1.16605 1.21532 0.92431 0.92893 1.50279 0.95760 1.19499 0.93666 0.95361 0.96086 1.21592 0.94829 0.97279 1.00814 1.21558 0.95277 0.93638 1.02869 1.20746 0.98573 0.94609 0.90647 1.23814 0.76025 0.80179 0.87088 1.90739 1.36702 1.67860 1.47711 1.84722 1.71412 1.26026 1.48958 1.21682 0.89812 0.98769 1.03784 1.22163 1.00179 0.93641 0.92084 1.60267 1.06503 1.26497 1.38766 1.22112 0.88502 0.95303 1.01972 1.21699 0.99906 0.96927 0.96011 0.92479 0.95820 0.97194 0.92985 0.93315 0.89313 0.92110 0.72510 0.88883 0.90760 0.92794 0.89160 0.82820 0.89908 0.92829 0.89179 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.70 13.96 21.45 0.30 -62.40 16 2 C 0.00 0.02 5.47 84.65 0.46 0.48 16 3 Si 0.96 46.42 27.47 68.60 1.88 48.30 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.53 -33.14 9.66 25.60 0.25 -32.89 16 8 H 0.02 1.66 7.99 -2.91 -0.02 1.64 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.32 16 10 C -0.11 -4.62 4.49 30.59 0.14 -4.49 16 11 C -0.10 -3.09 3.92 30.59 0.12 -2.97 16 12 C -0.04 -1.14 0.53 -52.85 -0.03 -1.17 16 13 C 0.49 13.57 6.55 71.24 0.47 14.04 16 14 O -0.54 -20.33 14.42 21.97 0.32 -20.02 16 15 O -0.50 -9.47 7.71 -51.40 -0.40 -9.87 16 16 C -0.10 -1.99 4.87 30.65 0.15 -1.84 16 17 C 0.05 0.76 6.29 86.33 0.54 1.31 16 18 N -0.69 -11.07 6.84 -514.04 -3.52 -14.59 16 19 C 0.05 0.94 6.29 86.33 0.54 1.49 16 20 C -0.11 -2.59 4.46 30.65 0.14 -2.45 16 21 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 22 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 23 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 24 H 0.05 2.49 5.52 -2.39 -0.01 2.48 16 25 H 0.05 2.06 6.50 -2.39 -0.02 2.04 16 26 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.06 2.01 8.10 -2.39 -0.02 1.99 16 28 H 0.41 4.94 9.10 -74.06 -0.67 4.27 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 0.88 5.41 -2.39 -0.01 0.87 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.35 4.25 8.90 -89.69 -0.80 3.45 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.03 5.40 -2.38 -0.01 1.02 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.65 6.58 -2.39 -0.02 1.63 16 Total: -1.00 -76.42 283.18 1.04 -75.38 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.44 Total: 12.01 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 2.90 Total: -28.82 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.22 Total: -76.99 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.08 Total: -29.88 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.88 Total: 48.30 kcal Total: -76.42 1.04 -75.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821979566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.435 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds