Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 120.00029 * 2 1 4 4 H 1.48502 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46816 * 300.00079 * 3 2 1 6 6 H 1.48499 * 109.46718 * 59.99965 * 3 2 1 7 7 C 1.37873 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00609 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47455 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47035 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99879 * 359.97438 * 12 11 10 14 14 O 1.34222 * 119.99985 * 179.97438 * 12 11 10 15 15 C 1.45200 * 117.00094 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47003 * 180.02562 * 15 14 12 17 17 N 1.46897 * 109.47346 * 65.00226 * 16 15 14 18 18 C 1.47482 * 111.00257 * 74.02580 * 17 16 15 19 19 C 1.53509 * 87.93284 * 138.70887 * 18 17 16 20 20 C 1.47475 * 111.00184 * 169.99748 * 17 16 15 21 21 H 0.96996 * 120.00086 * 0.02562 * 1 2 3 22 22 H 1.09011 * 109.46887 * 60.00317 * 9 7 2 23 23 H 1.09003 * 109.47314 * 300.01048 * 9 7 2 24 24 H 1.08994 * 109.47099 * 60.00452 * 10 9 7 25 25 H 1.08998 * 109.47020 * 300.00441 * 10 9 7 26 26 H 1.08994 * 109.47204 * 59.99960 * 11 10 9 27 27 H 1.09006 * 109.46916 * 299.99583 * 11 10 9 28 28 H 1.08993 * 109.47475 * 60.00347 * 15 14 12 29 29 H 1.09000 * 109.47147 * 300.00141 * 15 14 12 30 30 H 1.09004 * 109.46579 * 184.99602 * 16 15 14 31 31 H 1.08992 * 109.47046 * 304.99785 * 16 15 14 32 32 H 1.09004 * 113.47389 * 253.47377 * 18 17 16 33 33 H 1.09000 * 113.47745 * 23.93666 * 18 17 16 34 34 H 1.08998 * 114.16767 * 220.33183 * 19 18 17 35 35 H 1.08996 * 114.34875 * 87.63584 * 19 18 17 36 36 H 1.08995 * 113.47815 * 336.06686 * 20 17 16 37 37 H 1.09002 * 113.47776 * 106.52842 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 8 3.6476 -5.9117 -0.0001 14 8 2.0123 -7.3980 -0.0004 15 6 3.0124 -8.4507 -0.0004 16 6 2.3177 -9.8140 -0.0009 17 7 1.5743 -9.9843 -1.2564 18 6 2.4905 -10.2476 -2.3817 19 6 1.4868 -11.2964 -2.8809 20 6 1.0897 -11.3698 -1.3999 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5570 0.8896 24 1 2.8720 -3.6043 0.8894 25 1 2.8721 -3.6042 -0.8905 26 1 0.8540 -5.0446 -0.8913 27 1 0.8534 -5.0451 0.8887 28 1 3.6351 -8.3603 0.8895 29 1 3.6351 -8.3603 -0.8904 30 1 3.0650 -10.6025 0.0886 31 1 1.6274 -9.8703 0.8407 32 1 2.6040 -9.3993 -3.0567 33 1 3.4457 -10.6727 -2.0736 34 1 1.9468 -12.2068 -3.2653 35 1 0.7086 -10.8992 -3.5326 36 1 1.6709 -12.0944 -0.8297 37 1 0.0159 -11.4727 -1.2429 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861391036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = -68.983631 kcal Electronic energy + Delta-G solvation = -16749.438363 eV Core-core repulsion = 13913.507088 eV Total energy + Delta-G solvation = -2835.931275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.49984 -39.86347 -36.42405 -34.24939 -32.37510 -31.94311 -28.30998 -27.08673 -26.12110 -24.15153 -22.32787 -21.04945 -20.15295 -19.73017 -17.35132 -16.88602 -16.48293 -16.14622 -15.90603 -15.60281 -14.61424 -14.36906 -14.10682 -13.59712 -13.06399 -12.80541 -12.73130 -12.24151 -11.93582 -11.80872 -11.50989 -11.38664 -11.18411 -10.88060 -10.82535 -10.62520 -10.53034 -10.47197 -10.11439 -9.69608 -9.37015 -9.18167 -9.04183 -8.32129 -5.97245 -3.98974 2.58817 2.91876 3.34291 3.41532 3.47064 3.65462 4.12423 4.45045 4.49478 4.54480 4.85463 4.89245 4.98396 5.02896 5.18336 5.29892 5.38855 5.39007 5.45739 5.47702 5.54486 5.69743 5.74166 5.80887 5.97862 6.17811 6.64633 6.67190 6.74819 6.87230 7.12111 7.70539 7.82485 8.02958 8.12641 8.45980 9.08121 9.65044 11.14282 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.054040 B = 0.003350 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.014067 B = 8355.304908 C = 8518.580859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.099 4.099 11 C -0.111 4.111 12 C 0.459 3.541 13 O -0.514 6.514 14 O -0.347 6.347 15 C 0.071 3.929 16 C 0.019 3.981 17 N -0.463 5.463 18 C -0.009 4.009 19 C -0.145 4.145 20 C -0.005 4.005 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -23.824 -2.345 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.303 3.697 13 O -0.402 6.402 14 O -0.264 6.264 15 C -0.003 4.003 16 C -0.109 4.109 17 N -0.186 5.186 18 C -0.138 4.138 19 C -0.183 4.183 20 C -0.134 4.134 21 H 0.069 0.931 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.534 -23.086 -2.315 23.339 hybrid contribution 1.225 0.236 0.214 1.266 sum 3.759 -22.850 -2.101 23.252 Atomic orbital electron populations 1.69970 1.06030 1.26483 1.51108 1.25021 0.94862 0.99273 0.95364 0.86530 0.80191 0.83735 0.77532 1.19703 1.21018 1.21033 1.21283 0.93207 0.90931 1.50251 0.92509 1.19136 0.93913 0.91180 0.97450 1.21568 0.98918 0.91334 1.01872 1.21671 0.97325 0.90626 1.05243 1.24427 0.90065 0.83632 0.71582 1.90627 1.18617 1.85291 1.45664 1.86619 1.40073 1.15600 1.84142 1.22869 0.90024 0.85113 1.02314 1.22769 0.97987 0.94823 0.95348 1.69087 1.23743 1.23208 1.02523 1.23852 0.95498 0.99330 0.95107 1.23091 0.99605 0.99137 0.96486 1.23796 1.02370 0.90748 0.96473 0.93071 0.96321 0.96356 0.92521 0.92515 0.88089 0.88193 0.90984 0.91511 0.92033 0.89150 0.89562 0.91386 0.90712 0.88720 0.91459 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.16 4.44 -26.73 -0.12 -2.28 16 11 C -0.11 -1.95 5.81 -27.88 -0.16 -2.11 16 12 C 0.46 8.01 7.96 36.01 0.29 8.30 16 13 O -0.51 -10.27 15.73 -18.75 -0.29 -10.57 16 14 O -0.35 -5.32 10.17 -39.24 -0.40 -5.72 16 15 C 0.07 0.87 5.64 37.16 0.21 1.08 16 16 C 0.02 0.18 5.22 -3.82 -0.02 0.16 16 17 N -0.46 -4.74 6.37 -244.69 -1.56 -6.30 16 18 C -0.01 -0.08 6.93 -7.55 -0.05 -0.13 16 19 C -0.15 -1.00 8.47 -26.20 -0.22 -1.22 16 20 C 0.00 -0.04 7.70 -7.55 -0.06 -0.10 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 25 H 0.06 1.27 8.10 -51.93 -0.42 0.84 16 26 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 29 H 0.07 0.83 7.54 -51.93 -0.39 0.43 16 30 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.41 7.77 -51.93 -0.40 0.00 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -32.84 312.37 -8.71 -41.55 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.20 Total: -4.53 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -0.69 Total: -9.75 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: -0.82 Total: -32.74 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.69 Total: -16.29 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.84 -8.71 -41.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861391036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.432 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds