Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 120.00029 * 2 1 4 4 H 1.48502 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46816 * 300.00079 * 3 2 1 6 6 H 1.48499 * 109.46718 * 59.99965 * 3 2 1 7 7 C 1.37873 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00609 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47455 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47035 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99879 * 359.97438 * 12 11 10 14 14 O 1.34222 * 119.99985 * 179.97438 * 12 11 10 15 15 C 1.45200 * 117.00094 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47003 * 180.02562 * 15 14 12 17 17 N 1.46897 * 109.47346 * 65.00226 * 16 15 14 18 18 C 1.47482 * 111.00257 * 74.02580 * 17 16 15 19 19 C 1.53509 * 87.93284 * 138.70887 * 18 17 16 20 20 C 1.47475 * 111.00184 * 169.99748 * 17 16 15 21 21 H 0.96996 * 120.00086 * 0.02562 * 1 2 3 22 22 H 1.09011 * 109.46887 * 60.00317 * 9 7 2 23 23 H 1.09003 * 109.47314 * 300.01048 * 9 7 2 24 24 H 1.08994 * 109.47099 * 60.00452 * 10 9 7 25 25 H 1.08998 * 109.47020 * 300.00441 * 10 9 7 26 26 H 1.08994 * 109.47204 * 59.99960 * 11 10 9 27 27 H 1.09006 * 109.46916 * 299.99583 * 11 10 9 28 28 H 1.08993 * 109.47475 * 60.00347 * 15 14 12 29 29 H 1.09000 * 109.47147 * 300.00141 * 15 14 12 30 30 H 1.09004 * 109.46579 * 184.99602 * 16 15 14 31 31 H 1.08992 * 109.47046 * 304.99785 * 16 15 14 32 32 H 1.09004 * 113.47389 * 253.47377 * 18 17 16 33 33 H 1.09000 * 113.47745 * 23.93666 * 18 17 16 34 34 H 1.08998 * 114.16767 * 220.33183 * 19 18 17 35 35 H 1.08996 * 114.34875 * 87.63584 * 19 18 17 36 36 H 1.08995 * 113.47815 * 336.06686 * 20 17 16 37 37 H 1.09002 * 113.47776 * 106.52842 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 8 3.6476 -5.9117 -0.0001 14 8 2.0123 -7.3980 -0.0004 15 6 3.0124 -8.4507 -0.0004 16 6 2.3177 -9.8140 -0.0009 17 7 1.5743 -9.9843 -1.2564 18 6 2.4905 -10.2476 -2.3817 19 6 1.4868 -11.2964 -2.8809 20 6 1.0897 -11.3698 -1.3999 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5570 0.8896 24 1 2.8720 -3.6043 0.8894 25 1 2.8721 -3.6042 -0.8905 26 1 0.8540 -5.0446 -0.8913 27 1 0.8534 -5.0451 0.8887 28 1 3.6351 -8.3603 0.8895 29 1 3.6351 -8.3603 -0.8904 30 1 3.0650 -10.6025 0.0886 31 1 1.6274 -9.8703 0.8407 32 1 2.6040 -9.3993 -3.0567 33 1 3.4457 -10.6727 -2.0736 34 1 1.9468 -12.2068 -3.2653 35 1 0.7086 -10.8992 -3.5326 36 1 1.6709 -12.0944 -0.8297 37 1 0.0159 -11.4727 -1.2429 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861391036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = -90.625045 kcal Electronic energy + Delta-G solvation = -16750.376805 eV Core-core repulsion = 13913.507088 eV Total energy + Delta-G solvation = -2836.869717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58892 -40.77170 -37.73948 -36.16736 -34.12621 -33.04466 -30.06090 -28.04668 -26.74408 -26.00634 -23.40138 -22.52011 -21.39250 -20.74124 -18.77717 -18.41572 -17.91053 -17.28992 -16.81808 -16.67500 -16.44448 -15.72014 -15.35737 -14.50100 -14.40595 -14.05939 -13.90497 -13.77458 -13.45456 -13.15756 -12.67775 -12.59255 -12.49232 -12.40349 -12.23674 -11.98164 -11.68380 -11.61497 -11.54580 -11.43262 -11.37073 -11.13016 -10.54877 -9.82334 -8.20181 -6.30427 1.19950 1.40377 1.40504 1.54219 1.70863 2.42078 3.01433 3.13087 3.50700 3.72897 3.82267 3.87418 4.10622 4.14137 4.18811 4.24293 4.37727 4.45736 4.50738 4.66114 4.70364 4.78440 4.84987 4.89829 4.98687 5.04077 5.14884 5.24623 5.32323 5.40863 5.53163 5.72380 5.85787 6.08937 6.25956 6.77609 6.85362 7.38382 8.91739 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.054040 B = 0.003350 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.014067 B = 8355.304908 C = 8518.580859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.085 4.085 11 C -0.105 4.105 12 C 0.468 3.532 13 O -0.544 6.544 14 O -0.347 6.347 15 C 0.065 3.935 16 C 0.025 3.975 17 N -0.499 5.499 18 C -0.013 4.013 19 C -0.138 4.138 20 C -0.002 4.002 21 H 0.265 0.735 22 H 0.003 0.997 23 H 0.003 0.997 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -24.930 -2.267 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.123 4.123 11 C -0.142 4.142 12 C 0.313 3.687 13 O -0.434 6.434 14 O -0.263 6.263 15 C -0.009 4.009 16 C -0.103 4.103 17 N -0.222 5.222 18 C -0.142 4.142 19 C -0.175 4.175 20 C -0.130 4.130 21 H 0.074 0.926 22 H 0.021 0.979 23 H 0.022 0.978 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.038 -24.221 -2.239 24.514 hybrid contribution 1.042 0.508 0.181 1.173 sum 4.080 -23.714 -2.058 24.150 Atomic orbital electron populations 1.70075 1.07558 1.27778 1.51573 1.25924 0.95822 1.03157 0.94687 0.85422 0.78907 0.78898 0.77961 1.19087 1.20132 1.20117 1.21695 0.93418 0.92607 1.50716 0.92799 1.19022 0.94191 0.92192 0.95835 1.21266 0.97873 0.92176 1.00984 1.21485 0.97077 0.88819 1.06859 1.24169 0.89245 0.84387 0.70885 1.90618 1.19704 1.85843 1.47264 1.86595 1.41066 1.15229 1.83447 1.23205 0.89922 0.85374 1.02433 1.22783 0.98576 0.93613 0.95317 1.69068 1.24735 1.25303 1.03077 1.23912 0.96408 0.99288 0.94571 1.23058 0.98896 0.99352 0.96240 1.23847 1.02535 0.89693 0.96928 0.92639 0.97903 0.97818 0.93292 0.93469 0.86692 0.86418 0.90330 0.91977 0.89168 0.89018 0.91333 0.89876 0.88660 0.89461 0.89538 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.44 0.28 -56.41 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.55 -32.07 9.11 25.60 0.23 -31.84 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.74 4.44 30.60 0.14 -3.60 16 11 C -0.11 -3.63 5.81 29.85 0.17 -3.46 16 12 C 0.47 16.05 7.96 71.24 0.57 16.62 16 13 O -0.54 -21.63 15.73 21.98 0.35 -21.29 16 14 O -0.35 -10.28 10.17 -51.34 -0.52 -10.80 16 15 C 0.06 1.49 5.64 71.98 0.41 1.89 16 16 C 0.03 0.43 5.22 86.31 0.45 0.88 16 17 N -0.50 -9.41 6.37 -928.05 -5.91 -15.32 16 18 C -0.01 -0.20 6.93 83.57 0.58 0.38 16 19 C -0.14 -1.64 8.47 30.94 0.26 -1.38 16 20 C 0.00 -0.02 7.70 83.57 0.64 0.62 16 21 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 22 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 23 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.05 2.19 8.10 -2.39 -0.02 2.18 16 25 H 0.05 2.13 8.10 -2.39 -0.02 2.11 16 26 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 27 H 0.12 3.67 8.14 -2.38 -0.02 3.65 16 28 H 0.08 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.06 1.49 7.54 -2.39 -0.02 1.47 16 30 H 0.09 1.00 7.56 -2.39 -0.02 0.98 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.01 7.70 -2.39 -0.02 0.99 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 0.77 7.77 -2.39 -0.02 0.75 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -69.95 312.37 1.31 -68.64 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.02 Total: 5.82 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.06 Total: -17.85 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -5.63 Total: -71.73 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.18 Total: -32.09 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.95 1.31 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861391036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.985 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds