Wall clock time and date at job start Mon Mar 30 2020 03:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47337 * 2 1 4 4 C 1.53003 * 112.99767 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46624 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00521 * 359.73045 * 5 4 3 7 7 N 1.34784 * 119.99774 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99971 * 359.72768 * 7 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 7 5 4 10 10 C 1.50697 * 109.47293 * 90.00297 * 9 7 5 11 11 H 1.07997 * 120.00010 * 359.97438 * 10 9 7 12 12 C 1.37875 * 120.00091 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00149 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00247 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47351 * 59.99383 * 14 12 10 16 16 H 1.48496 * 109.47133 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46935 * 299.99671 * 14 12 10 18 18 C 1.54029 * 113.81604 * 311.82550 * 3 2 1 19 19 O 1.44443 * 85.42728 * 91.80581 * 18 3 2 20 20 C 1.44179 * 93.37922 * 24.08782 * 19 18 3 21 21 H 1.09008 * 109.46544 * 59.99843 * 1 2 3 22 22 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47065 * 300.00641 * 1 2 3 24 24 H 1.08997 * 109.47569 * 239.99468 * 2 1 3 25 25 H 1.09005 * 109.47017 * 119.99573 * 2 1 3 26 26 H 1.09001 * 109.46782 * 60.00648 * 4 3 2 27 27 H 1.08993 * 109.47555 * 300.00205 * 4 3 2 28 28 H 1.08999 * 109.47256 * 89.99766 * 8 7 5 29 29 H 1.08998 * 109.47416 * 209.99869 * 8 7 5 30 30 H 1.09008 * 109.47058 * 330.00468 * 8 7 5 31 31 H 1.08997 * 109.46865 * 210.00034 * 9 7 5 32 32 H 1.08998 * 109.47058 * 329.99547 * 9 7 5 33 33 H 0.96995 * 120.00744 * 180.02562 * 13 12 10 34 34 H 1.09002 * 113.86507 * 205.91539 * 18 3 2 35 35 H 1.09004 * 113.86114 * 337.61658 * 18 3 2 36 36 H 1.08996 * 113.86289 * 221.76428 * 20 19 18 37 37 H 1.09004 * 113.86087 * 90.05946 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5672 1.5366 0.0006 5 6 3.9811 2.9856 0.0000 6 8 3.1378 3.8572 -0.0059 7 7 5.2886 3.3129 -0.0002 8 6 6.3073 2.2601 0.0064 9 6 5.6910 4.7216 -0.0068 10 6 5.8274 5.2118 1.4117 11 1 5.6334 4.5412 2.2357 12 6 6.1990 6.5166 1.6574 13 7 6.4349 7.3333 0.6539 14 14 6.3674 7.1244 3.4157 15 1 7.3965 6.3193 4.1214 16 1 6.7754 8.5522 3.4089 17 1 5.0646 6.9847 4.1146 18 6 1.3615 2.3422 -1.0501 19 8 0.4265 2.6675 0.0018 20 6 1.3614 2.3422 1.0501 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9618 1.0460 -0.8892 27 1 3.9611 1.0462 0.8907 28 1 6.5611 1.9937 -1.0196 29 1 7.1990 2.6204 0.5194 30 1 5.9197 1.3827 0.5242 31 1 6.6472 4.8238 -0.5201 32 1 4.9357 5.3127 -0.5246 33 1 6.6966 8.2511 0.8267 34 1 1.9743 3.1844 -1.3714 35 1 0.9188 1.7931 -1.8812 36 1 0.9185 1.7933 1.8811 37 1 1.9742 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930595014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:50 Heat of formation + Delta-G solvation = -44.762224 kcal Electronic energy + Delta-G solvation = -18274.400180 eV Core-core repulsion = 15439.519224 eV Total energy + Delta-G solvation = -2834.880956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98894 -38.42970 -34.86245 -33.66022 -32.62692 -30.69384 -27.91336 -26.27622 -26.20447 -25.22118 -23.58762 -22.45503 -18.74802 -18.19726 -16.65558 -16.55978 -15.87572 -15.60392 -15.34550 -14.76666 -14.70226 -14.16320 -13.95462 -12.92593 -12.88513 -12.61147 -12.52345 -12.15439 -11.93668 -11.83496 -11.41085 -11.30157 -11.12364 -11.04733 -10.83365 -10.58102 -10.20921 -10.08289 -10.00780 -9.64470 -9.40440 -8.45472 -8.43957 -7.65563 -6.05845 -4.11022 3.30479 3.32990 3.35681 3.40316 3.88412 4.18338 4.38036 4.43461 4.81224 4.97658 5.24716 5.28929 5.29659 5.41892 5.57239 5.61196 5.70774 5.72034 5.81157 5.85581 5.91453 5.92281 6.10767 6.18117 6.25683 6.37088 6.49700 6.59650 6.64433 7.02648 7.42021 7.51278 7.89916 8.21087 8.38029 8.87371 9.05499 9.54256 11.02181 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033465 B = 0.006218 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.482561 B = 4502.308229 C = 4803.930974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.121 4.121 4 C -0.134 4.134 5 C 0.499 3.501 6 O -0.533 6.533 7 N -0.601 5.601 8 C 0.083 3.917 9 C 0.245 3.755 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.045 3.955 19 O -0.379 6.379 20 C 0.045 3.955 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 -15.321 -2.091 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.122 4.122 4 C -0.174 4.174 5 C 0.287 3.713 6 O -0.412 6.412 7 N -0.332 5.332 8 C -0.062 4.062 9 C 0.126 3.874 10 C -0.566 4.566 11 H 0.074 0.926 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.031 4.031 19 O -0.298 6.298 20 C -0.031 4.031 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.398 -14.556 -2.144 15.672 hybrid contribution 0.547 0.225 1.007 1.167 sum -4.851 -14.331 -1.138 15.173 Atomic orbital electron populations 1.21780 0.95075 1.00452 1.03146 1.21242 0.96517 0.93657 1.01985 1.23527 0.93842 0.96391 0.98417 1.21623 0.96166 0.95813 1.03813 1.20337 0.82923 0.90474 0.77582 1.90627 1.49427 1.51208 1.49921 1.48215 1.04707 1.09423 1.70892 1.21648 0.93260 0.90840 1.00415 1.19291 0.96027 0.74617 0.97515 1.21371 1.46661 0.96357 0.92234 0.92581 1.24931 0.95213 0.96493 0.97394 1.69917 1.46653 1.06080 1.30691 0.86562 0.78538 0.77699 0.84642 1.20285 1.21148 1.20157 1.24330 0.90139 0.97560 0.91093 1.89590 1.32477 1.90792 1.16935 1.24310 0.90094 0.97683 0.91056 0.92229 0.93472 0.92189 0.91645 0.91616 0.89305 0.89150 0.93737 0.90781 0.92425 0.95099 0.93761 0.92633 0.87727 0.91146 0.91133 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.63 37.16 0.32 -1.30 16 2 C -0.10 -1.04 5.65 -26.73 -0.15 -1.20 16 3 C -0.12 -1.69 1.38 -153.43 -0.21 -1.90 16 4 C -0.13 -1.86 4.04 -27.88 -0.11 -1.97 16 5 C 0.50 9.76 6.94 -10.98 -0.08 9.68 16 6 O -0.53 -12.42 10.50 5.55 0.06 -12.37 16 7 N -0.60 -12.29 2.86 -182.96 -0.52 -12.81 16 8 C 0.08 1.25 10.24 59.85 0.61 1.86 16 9 C 0.24 6.30 5.16 -5.20 -0.03 6.27 16 10 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 11 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 14 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.05 0.72 7.23 37.64 0.27 0.99 16 19 O -0.38 -6.81 10.87 -35.23 -0.38 -7.19 16 20 C 0.04 0.74 7.22 37.64 0.27 1.02 16 21 H 0.06 0.71 6.53 -51.92 -0.34 0.37 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.72 6.53 -51.93 -0.34 0.38 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.04 8.11 -51.93 -0.42 0.61 16 27 H 0.09 1.11 7.39 -51.93 -0.38 0.73 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.06 0.70 6.44 -51.92 -0.33 0.37 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.11 1.96 5.53 -51.93 -0.29 1.67 16 35 H 0.07 0.95 7.33 -51.93 -0.38 0.57 16 36 H 0.07 1.01 7.33 -51.93 -0.38 0.63 16 37 H 0.11 2.14 5.55 -51.93 -0.29 1.85 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -31.99 292.70 -5.86 -37.85 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.61 Total: -0.87 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.48 Total: -0.01 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.21 Total: -38.60 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.32 Total: -19.56 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.99 -5.86 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930595014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.915 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds