Wall clock time and date at job start Mon Mar 30 2020 03:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47337 * 2 1 4 4 C 1.53003 * 112.99767 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46624 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00521 * 359.73045 * 5 4 3 7 7 N 1.34784 * 119.99774 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99971 * 359.72768 * 7 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 7 5 4 10 10 C 1.50697 * 109.47293 * 90.00297 * 9 7 5 11 11 H 1.07997 * 120.00010 * 359.97438 * 10 9 7 12 12 C 1.37875 * 120.00091 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00149 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00247 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47351 * 59.99383 * 14 12 10 16 16 H 1.48496 * 109.47133 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46935 * 299.99671 * 14 12 10 18 18 C 1.54029 * 113.81604 * 311.82550 * 3 2 1 19 19 O 1.44443 * 85.42728 * 91.80581 * 18 3 2 20 20 C 1.44179 * 93.37922 * 24.08782 * 19 18 3 21 21 H 1.09008 * 109.46544 * 59.99843 * 1 2 3 22 22 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47065 * 300.00641 * 1 2 3 24 24 H 1.08997 * 109.47569 * 239.99468 * 2 1 3 25 25 H 1.09005 * 109.47017 * 119.99573 * 2 1 3 26 26 H 1.09001 * 109.46782 * 60.00648 * 4 3 2 27 27 H 1.08993 * 109.47555 * 300.00205 * 4 3 2 28 28 H 1.08999 * 109.47256 * 89.99766 * 8 7 5 29 29 H 1.08998 * 109.47416 * 209.99869 * 8 7 5 30 30 H 1.09008 * 109.47058 * 330.00468 * 8 7 5 31 31 H 1.08997 * 109.46865 * 210.00034 * 9 7 5 32 32 H 1.08998 * 109.47058 * 329.99547 * 9 7 5 33 33 H 0.96995 * 120.00744 * 180.02562 * 13 12 10 34 34 H 1.09002 * 113.86507 * 205.91539 * 18 3 2 35 35 H 1.09004 * 113.86114 * 337.61658 * 18 3 2 36 36 H 1.08996 * 113.86289 * 221.76428 * 20 19 18 37 37 H 1.09004 * 113.86087 * 90.05946 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5672 1.5366 0.0006 5 6 3.9811 2.9856 0.0000 6 8 3.1378 3.8572 -0.0059 7 7 5.2886 3.3129 -0.0002 8 6 6.3073 2.2601 0.0064 9 6 5.6910 4.7216 -0.0068 10 6 5.8274 5.2118 1.4117 11 1 5.6334 4.5412 2.2357 12 6 6.1990 6.5166 1.6574 13 7 6.4349 7.3333 0.6539 14 14 6.3674 7.1244 3.4157 15 1 7.3965 6.3193 4.1214 16 1 6.7754 8.5522 3.4089 17 1 5.0646 6.9847 4.1146 18 6 1.3615 2.3422 -1.0501 19 8 0.4265 2.6675 0.0018 20 6 1.3614 2.3422 1.0501 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9618 1.0460 -0.8892 27 1 3.9611 1.0462 0.8907 28 1 6.5611 1.9937 -1.0196 29 1 7.1990 2.6204 0.5194 30 1 5.9197 1.3827 0.5242 31 1 6.6472 4.8238 -0.5201 32 1 4.9357 5.3127 -0.5246 33 1 6.6966 8.2511 0.8267 34 1 1.9743 3.1844 -1.3714 35 1 0.9188 1.7931 -1.8812 36 1 0.9185 1.7933 1.8811 37 1 1.9742 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930595014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:49 Heat of formation + Delta-G solvation = -66.828137 kcal Electronic energy + Delta-G solvation = -18275.357029 eV Core-core repulsion = 15439.519224 eV Total energy + Delta-G solvation = -2835.837806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.27228 -39.94403 -36.54889 -34.90425 -34.55167 -31.87168 -29.73252 -27.56989 -27.47727 -26.79765 -24.85006 -24.05810 -20.15589 -19.46955 -18.69860 -17.96930 -17.22956 -17.13704 -16.74591 -16.41524 -16.06855 -15.59379 -15.30567 -14.44393 -14.23582 -13.83384 -13.79979 -13.68249 -13.42587 -13.14340 -12.84894 -12.75658 -12.56060 -12.53664 -12.21478 -12.08675 -12.06835 -11.67930 -11.25809 -11.12578 -10.80790 -10.64701 -9.90290 -9.34590 -8.22633 -6.37741 1.35433 1.39711 1.46861 1.87364 2.32304 2.47774 2.95527 3.06790 3.23511 3.65570 3.91066 4.13886 4.24465 4.42246 4.48773 4.59771 4.64648 4.69838 4.77370 4.79433 4.84548 4.85032 4.98960 5.04810 5.11409 5.23081 5.27779 5.35240 5.37964 5.39901 5.54740 5.57825 5.86631 6.06363 6.70201 6.83811 7.29034 7.54419 8.83884 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033465 B = 0.006218 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.482561 B = 4502.308229 C = 4803.930974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.100 4.100 4 C -0.120 4.120 5 C 0.487 3.513 6 O -0.581 6.581 7 N -0.612 5.612 8 C 0.077 3.923 9 C 0.260 3.740 10 C -0.541 4.541 11 H 0.053 0.947 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.966 3.034 15 H -0.259 1.259 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.037 3.963 19 O -0.402 6.402 20 C 0.035 3.965 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.020 0.980 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -18.602 -1.264 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.159 4.159 5 C 0.277 3.723 6 O -0.463 6.463 7 N -0.343 5.343 8 C -0.065 4.065 9 C 0.138 3.862 10 C -0.580 4.580 11 H 0.072 0.928 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.183 1.183 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.039 4.039 19 O -0.321 6.321 20 C -0.042 4.042 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.038 0.962 32 H 0.014 0.986 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.981 -17.888 -1.322 18.615 hybrid contribution 0.369 1.276 0.695 1.499 sum -4.612 -16.612 -0.627 17.252 Atomic orbital electron populations 1.21770 0.95514 1.01466 1.01732 1.21281 0.96040 0.90961 1.04316 1.23434 0.93658 0.97752 0.95207 1.21648 0.96114 0.91322 1.06859 1.21454 0.81900 0.92835 0.76090 1.90633 1.50716 1.53387 1.51589 1.48236 1.06542 1.08259 1.71263 1.21943 0.91648 0.90310 1.02573 1.18702 0.93786 0.77875 0.95840 1.21678 1.46404 0.96778 0.93115 0.92832 1.25857 0.94782 0.96723 1.01827 1.70043 1.47472 1.06438 1.32985 0.85493 0.78626 0.77550 0.79300 1.18323 1.20438 1.20457 1.24309 0.90193 0.97318 0.92125 1.89563 1.33373 1.91165 1.18026 1.24236 0.90311 0.97360 0.92252 0.93555 0.91167 0.93810 0.89053 0.89406 0.85620 0.86157 0.91160 0.91959 0.88394 0.96192 0.98553 0.92459 0.91384 0.88493 0.88897 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.63 71.98 0.62 -2.16 16 2 C -0.09 -1.50 5.65 30.60 0.17 -1.33 16 3 C -0.10 -2.54 1.38 -51.48 -0.07 -2.61 16 4 C -0.12 -2.93 4.04 29.85 0.12 -2.81 16 5 C 0.49 19.01 6.94 87.65 0.61 19.61 16 6 O -0.58 -28.59 10.50 -3.04 -0.03 -28.62 16 7 N -0.61 -25.02 2.86 -851.13 -2.43 -27.45 16 8 C 0.08 2.15 10.24 127.77 1.31 3.45 16 9 C 0.26 13.98 5.16 85.63 0.44 14.42 16 10 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 11 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 12 C 0.01 0.40 5.46 84.65 0.46 0.87 16 13 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 14 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 C 0.04 1.16 7.23 72.29 0.52 1.69 16 19 O -0.40 -14.67 10.87 -148.98 -1.62 -16.29 16 20 C 0.03 1.15 7.22 72.30 0.52 1.67 16 21 H 0.05 0.99 6.53 -2.38 -0.02 0.97 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.04 0.96 6.53 -2.39 -0.02 0.94 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.09 1.18 8.14 -2.38 -0.02 1.17 16 26 H 0.13 2.24 8.11 -2.39 -0.02 2.23 16 27 H 0.12 2.32 7.39 -2.39 -0.02 2.30 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 30 H 0.10 1.92 6.44 -2.38 -0.02 1.91 16 31 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 32 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.07 2.67 5.53 -2.39 -0.01 2.66 16 35 H 0.10 2.47 7.33 -2.39 -0.02 2.45 16 36 H 0.09 2.56 7.33 -2.39 -0.02 2.54 16 37 H 0.06 2.70 5.55 -2.39 -0.01 2.69 16 Total: -1.00 -75.13 292.70 4.23 -70.91 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.05 Total: 8.92 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 4.95 Total: 1.85 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.15 Total: -83.97 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.65 Total: -44.91 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.13 4.23 -70.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930595014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.078 kcal (2) G-P(sol) polarization free energy of solvation -75.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds