Wall clock time and date at job start Mon Mar 30 2020 04:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47482 * 2 1 4 4 H 1.09002 * 109.87039 * 54.29737 * 3 2 1 5 5 O 1.43741 * 110.00290 * 293.21003 * 3 2 1 6 6 C 1.44382 * 106.98021 * 213.99181 * 5 3 2 7 7 C 1.54993 * 103.48614 * 40.05788 * 6 5 3 8 8 C 1.54104 * 109.88136 * 175.30618 * 3 2 1 9 9 H 1.09002 * 110.48549 * 2.79321 * 8 3 2 10 10 N 1.46499 * 110.48520 * 240.28237 * 8 3 2 11 11 C 1.34780 * 119.99851 * 154.99999 * 10 8 3 12 12 O 1.21278 * 120.00215 * 359.97438 * 11 10 8 13 13 C 1.50696 * 119.99647 * 179.97438 * 11 10 8 14 14 H 1.09003 * 109.47768 * 299.99883 * 13 11 10 15 15 C 1.53005 * 109.47430 * 60.00156 * 13 11 10 16 16 C 1.50701 * 109.46956 * 179.97438 * 13 11 10 17 17 H 1.08000 * 119.99844 * 359.97438 * 16 13 11 18 18 C 1.37880 * 120.00142 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99902 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00194 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47254 * 89.99950 * 20 18 16 22 22 H 1.48506 * 109.47404 * 209.99902 * 20 18 16 23 23 H 1.48503 * 109.47206 * 329.99669 * 20 18 16 24 24 H 1.08997 * 109.47308 * 300.00681 * 1 2 3 25 25 H 1.09007 * 109.46706 * 60.00355 * 1 2 3 26 26 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47308 * 239.99318 * 2 1 3 28 28 H 1.09004 * 109.46983 * 120.00099 * 2 1 3 29 29 H 1.09000 * 110.61613 * 281.56153 * 6 5 3 30 30 H 1.08993 * 110.75634 * 158.62332 * 6 5 3 31 31 H 1.09004 * 110.90886 * 204.77674 * 7 6 5 32 32 H 1.09010 * 110.93642 * 81.19164 * 7 6 5 33 33 H 0.96995 * 120.00167 * 334.99299 * 10 8 3 34 34 H 1.08996 * 109.47086 * 180.02562 * 15 13 11 35 35 H 1.08998 * 109.46545 * 299.99840 * 15 13 11 36 36 H 1.09000 * 109.47345 * 59.99323 * 15 13 11 37 37 H 0.97000 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5996 1.9912 0.8325 5 8 1.7021 2.0835 -1.2414 6 6 2.7761 2.9978 -1.5498 7 6 4.0486 2.2094 -1.1481 8 6 3.5765 1.4550 0.1186 9 1 3.9668 0.4373 0.1267 10 7 3.9916 2.1717 1.3270 11 6 5.1802 1.8957 1.8994 12 8 5.9058 1.0536 1.4144 13 6 5.6074 2.6334 3.1420 14 1 5.6585 3.7016 2.9311 15 6 4.5921 2.3821 4.2588 16 6 6.9638 2.1413 3.5770 17 1 7.4660 1.3711 3.0104 18 6 7.5632 2.6736 4.6988 19 7 6.9514 3.6112 5.3890 20 14 9.2447 2.0642 5.2375 21 1 10.2995 2.8841 4.5891 22 1 9.3642 2.1809 6.7131 23 1 9.4073 0.6430 4.8387 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.6863 3.9089 -0.9583 30 1 2.7900 3.2324 -2.6141 31 1 4.8689 2.8880 -0.9136 32 1 4.3373 1.5097 -1.9326 33 1 3.4111 2.8450 1.7150 34 1 4.9009 2.9161 5.1574 35 1 3.6109 2.7377 3.9444 36 1 4.5410 1.3140 4.4698 37 1 7.3728 3.9854 6.1784 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597764708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:59 Heat of formation + Delta-G solvation = -101.239940 kcal Electronic energy + Delta-G solvation = -17902.965218 eV Core-core repulsion = 15065.635204 eV Total energy + Delta-G solvation = -2837.330013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05058 -38.26267 -34.08775 -33.74063 -33.52820 -31.03038 -29.83774 -27.76420 -25.14513 -23.62232 -22.82726 -21.49137 -20.75800 -19.21159 -16.88023 -16.16051 -16.03173 -15.91971 -15.27091 -14.72553 -14.21263 -13.97908 -13.58647 -13.39762 -12.98038 -12.86881 -12.52320 -12.09933 -11.65323 -11.54442 -11.34535 -11.06711 -11.02152 -10.91242 -10.79707 -10.71736 -10.67833 -10.25278 -9.96810 -9.72775 -8.99089 -8.64990 -8.49572 -8.33825 -6.04151 -4.07351 3.33130 3.38883 3.45613 3.66232 3.70019 3.93174 4.46640 4.66266 4.68501 4.99061 5.02915 5.12060 5.24902 5.29326 5.30101 5.53524 5.66689 5.73494 5.83394 5.90980 5.95333 6.05602 6.12297 6.22361 6.32484 6.60147 6.77408 6.80915 6.90955 7.09805 7.45748 7.74217 7.97148 8.12428 8.41702 9.01695 9.20283 9.58347 11.03455 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039204 B = 0.005375 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.033347 B = 5208.117215 C = 5383.842445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.072 3.928 4 H 0.073 0.927 5 O -0.372 6.372 6 C 0.047 3.953 7 C -0.166 4.166 8 C 0.115 3.885 9 H 0.100 0.900 10 N -0.739 5.739 11 C 0.521 3.479 12 O -0.544 6.544 13 C 0.029 3.971 14 H 0.052 0.948 15 C -0.132 4.132 16 C -0.501 4.501 17 H 0.074 0.926 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.093 0.907 35 H 0.011 0.989 36 H 0.031 0.969 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 -1.579 -9.715 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.013 3.987 4 H 0.091 0.909 5 O -0.292 6.292 6 C -0.030 4.030 7 C -0.205 4.205 8 C 0.009 3.991 9 H 0.118 0.882 10 N -0.394 5.394 11 C 0.311 3.689 12 O -0.419 6.419 13 C 0.008 3.992 14 H 0.070 0.930 15 C -0.190 4.190 16 C -0.539 4.539 17 H 0.092 0.908 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.230 0.770 34 H 0.112 0.888 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.062 -2.138 -10.016 15.075 hybrid contribution 0.799 0.197 0.630 1.036 sum -10.262 -1.941 -9.386 14.042 Atomic orbital electron populations 1.21711 0.95228 1.01428 1.02154 1.21679 0.96714 0.94456 1.02979 1.23063 0.93475 0.94564 0.87568 0.90921 1.88861 1.43552 1.57002 1.39741 1.23554 0.85635 0.92710 1.01097 1.23543 0.98615 1.00248 0.98117 1.22173 0.93106 0.98184 0.85686 0.88157 1.46393 1.21845 1.42995 1.28156 1.22020 0.78854 0.82356 0.85676 1.90530 1.52782 1.33875 1.64742 1.18882 0.96512 0.96231 0.87583 0.93025 1.21742 0.94505 1.00223 1.02549 1.21141 1.00680 1.21714 1.10378 0.90803 1.24953 0.98056 0.94964 0.96288 1.69872 1.38126 1.27421 1.18213 0.86450 0.83931 0.79439 0.77381 1.20672 1.21292 1.19757 0.92821 0.92146 0.92825 0.91092 0.90485 0.92153 0.89103 0.89570 0.90141 0.77018 0.88824 0.96954 0.94977 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.83 37.16 0.37 -1.12 16 2 C -0.12 -1.38 5.43 -26.73 -0.15 -1.52 16 3 C 0.07 0.91 3.19 -26.16 -0.08 0.82 16 4 H 0.07 0.90 7.64 -51.93 -0.40 0.50 16 5 O -0.37 -4.84 10.84 -35.23 -0.38 -5.22 16 6 C 0.05 0.54 7.72 38.21 0.29 0.83 16 7 C -0.17 -2.23 6.88 -24.73 -0.17 -2.40 16 8 C 0.11 1.71 3.04 -66.40 -0.20 1.51 16 9 H 0.10 1.67 7.11 -51.93 -0.37 1.30 16 10 N -0.74 -12.57 4.97 -52.33 -0.26 -12.83 16 11 C 0.52 11.64 7.15 -10.99 -0.08 11.56 16 12 O -0.54 -13.96 15.11 5.56 0.08 -13.88 16 13 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 14 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.13 -3.00 8.86 37.16 0.33 -2.67 16 16 C -0.50 -14.13 8.37 -34.44 -0.29 -14.42 16 17 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -25.06 11.32 55.43 0.63 -24.43 16 20 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 32 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.40 5.89 7.76 -40.82 -0.32 5.57 16 34 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 35 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -30.58 301.94 -6.63 -37.21 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.91 Total: 3.29 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.32 Total: -5.44 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.37 Total: -37.26 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.30 Total: -19.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.58 -6.63 -37.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597764708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.029 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds