Wall clock time and date at job start Mon Mar 30 2020 04:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47482 * 2 1 4 4 H 1.09002 * 109.87039 * 54.29737 * 3 2 1 5 5 O 1.43741 * 110.00290 * 293.21003 * 3 2 1 6 6 C 1.44382 * 106.98021 * 213.99181 * 5 3 2 7 7 C 1.54993 * 103.48614 * 40.05788 * 6 5 3 8 8 C 1.54104 * 109.88136 * 175.30618 * 3 2 1 9 9 H 1.09002 * 110.48549 * 2.79321 * 8 3 2 10 10 N 1.46499 * 110.48520 * 240.28237 * 8 3 2 11 11 C 1.34780 * 119.99851 * 154.99999 * 10 8 3 12 12 O 1.21278 * 120.00215 * 359.97438 * 11 10 8 13 13 C 1.50696 * 119.99647 * 179.97438 * 11 10 8 14 14 H 1.09003 * 109.47768 * 299.99883 * 13 11 10 15 15 C 1.53005 * 109.47430 * 60.00156 * 13 11 10 16 16 C 1.50701 * 109.46956 * 179.97438 * 13 11 10 17 17 H 1.08000 * 119.99844 * 359.97438 * 16 13 11 18 18 C 1.37880 * 120.00142 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99902 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00194 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47254 * 89.99950 * 20 18 16 22 22 H 1.48506 * 109.47404 * 209.99902 * 20 18 16 23 23 H 1.48503 * 109.47206 * 329.99669 * 20 18 16 24 24 H 1.08997 * 109.47308 * 300.00681 * 1 2 3 25 25 H 1.09007 * 109.46706 * 60.00355 * 1 2 3 26 26 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47308 * 239.99318 * 2 1 3 28 28 H 1.09004 * 109.46983 * 120.00099 * 2 1 3 29 29 H 1.09000 * 110.61613 * 281.56153 * 6 5 3 30 30 H 1.08993 * 110.75634 * 158.62332 * 6 5 3 31 31 H 1.09004 * 110.90886 * 204.77674 * 7 6 5 32 32 H 1.09010 * 110.93642 * 81.19164 * 7 6 5 33 33 H 0.96995 * 120.00167 * 334.99299 * 10 8 3 34 34 H 1.08996 * 109.47086 * 180.02562 * 15 13 11 35 35 H 1.08998 * 109.46545 * 299.99840 * 15 13 11 36 36 H 1.09000 * 109.47345 * 59.99323 * 15 13 11 37 37 H 0.97000 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5996 1.9912 0.8325 5 8 1.7021 2.0835 -1.2414 6 6 2.7761 2.9978 -1.5498 7 6 4.0486 2.2094 -1.1481 8 6 3.5765 1.4550 0.1186 9 1 3.9668 0.4373 0.1267 10 7 3.9916 2.1717 1.3270 11 6 5.1802 1.8957 1.8994 12 8 5.9058 1.0536 1.4144 13 6 5.6074 2.6334 3.1420 14 1 5.6585 3.7016 2.9311 15 6 4.5921 2.3821 4.2588 16 6 6.9638 2.1413 3.5770 17 1 7.4660 1.3711 3.0104 18 6 7.5632 2.6736 4.6988 19 7 6.9514 3.6112 5.3890 20 14 9.2447 2.0642 5.2375 21 1 10.2995 2.8841 4.5891 22 1 9.3642 2.1809 6.7131 23 1 9.4073 0.6430 4.8387 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.6863 3.9089 -0.9583 30 1 2.7900 3.2324 -2.6141 31 1 4.8689 2.8880 -0.9136 32 1 4.3373 1.5097 -1.9326 33 1 3.4111 2.8450 1.7150 34 1 4.9009 2.9161 5.1574 35 1 3.6109 2.7377 3.9444 36 1 4.5410 1.3140 4.4698 37 1 7.3728 3.9854 6.1784 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597764708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:59 Heat of formation + Delta-G solvation = -121.664851 kcal Electronic energy + Delta-G solvation = -17903.850908 eV Core-core repulsion = 15065.635204 eV Total energy + Delta-G solvation = -2838.215704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31984 -39.81850 -35.79871 -35.47383 -34.47764 -32.78532 -31.29154 -28.82117 -27.19732 -24.93887 -24.18496 -22.67359 -21.96751 -20.84580 -18.46649 -18.02546 -17.39982 -17.06007 -16.57839 -16.42272 -15.77839 -15.55856 -14.73752 -14.54168 -14.46233 -14.17603 -13.93593 -13.52070 -13.24996 -12.96784 -12.68237 -12.61131 -12.52218 -12.48129 -12.18499 -12.05234 -12.00946 -11.88429 -11.72839 -11.04487 -10.72418 -10.59755 -10.31002 -9.99756 -8.15464 -6.25753 1.40557 1.41483 1.53169 1.89403 2.27300 2.48381 2.85978 3.14268 3.57709 3.63680 3.93766 4.03105 4.20516 4.23012 4.32891 4.42133 4.59715 4.74980 4.77489 4.81468 4.87493 4.93908 4.97280 5.00365 5.03256 5.10944 5.22815 5.42368 5.49348 5.52815 5.74355 5.88513 5.95092 6.20944 6.70260 6.84851 7.39369 7.52127 8.90270 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039204 B = 0.005375 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.033347 B = 5208.117215 C = 5383.842445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.080 3.920 4 H 0.082 0.918 5 O -0.377 6.377 6 C 0.051 3.949 7 C -0.166 4.166 8 C 0.109 3.891 9 H 0.081 0.919 10 N -0.717 5.717 11 C 0.525 3.475 12 O -0.584 6.584 13 C 0.024 3.976 14 H 0.042 0.958 15 C -0.120 4.120 16 C -0.529 4.529 17 H 0.048 0.952 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.275 1.275 23 H -0.279 1.279 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.409 0.591 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.023 0.977 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 -1.250 -10.129 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.021 3.979 4 H 0.100 0.900 5 O -0.297 6.297 6 C -0.025 4.025 7 C -0.205 4.205 8 C 0.003 3.997 9 H 0.100 0.900 10 N -0.371 5.371 11 C 0.315 3.685 12 O -0.463 6.463 13 C 0.003 3.997 14 H 0.060 0.940 15 C -0.178 4.178 16 C -0.567 4.567 17 H 0.066 0.934 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.781 3.219 21 H -0.200 1.200 22 H -0.200 1.200 23 H -0.204 1.204 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.372 -1.778 -10.439 16.285 hybrid contribution 1.164 0.116 0.718 1.373 sum -11.208 -1.662 -9.720 14.929 Atomic orbital electron populations 1.21674 0.93887 1.02301 1.02192 1.21695 0.97836 0.93541 1.02862 1.23008 0.91326 0.95563 0.87974 0.90027 1.88867 1.43851 1.57299 1.39650 1.23653 0.83835 0.92249 1.02763 1.23516 0.99253 1.00245 0.97469 1.22347 0.95083 0.97111 0.85146 0.90045 1.46068 1.20106 1.42611 1.28320 1.21536 0.80031 0.81741 0.85226 1.90510 1.54443 1.35664 1.65711 1.18819 0.95852 0.95642 0.89433 0.94042 1.21559 0.95949 0.99414 1.00857 1.21283 1.02715 1.21802 1.10919 0.93381 1.25585 1.01090 0.95086 0.96158 1.69947 1.39118 1.27630 1.18303 0.85606 0.80280 0.78511 0.77547 1.20035 1.19958 1.20413 0.92398 0.92424 0.91621 0.91130 0.90815 0.91289 0.86760 0.91059 0.89475 0.75440 0.91107 0.92911 0.95803 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.83 71.98 0.71 -1.84 16 2 C -0.12 -2.57 5.43 30.59 0.17 -2.40 16 3 C 0.08 1.85 3.19 30.97 0.10 1.95 16 4 H 0.08 1.78 7.64 -2.39 -0.02 1.76 16 5 O -0.38 -8.81 10.84 -148.98 -1.61 -10.42 16 6 C 0.05 1.05 7.72 72.66 0.56 1.61 16 7 C -0.17 -4.26 6.88 31.89 0.22 -4.04 16 8 C 0.11 3.13 3.04 45.98 0.14 3.27 16 9 H 0.08 2.71 7.11 -2.39 -0.02 2.69 16 10 N -0.72 -23.71 4.97 -437.85 -2.18 -25.88 16 11 C 0.53 23.62 7.15 87.66 0.63 24.25 16 12 O -0.58 -30.74 15.11 -3.02 -0.05 -30.78 16 13 C 0.02 1.18 2.64 -12.29 -0.03 1.14 16 14 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 15 C -0.12 -5.36 8.86 71.98 0.64 -4.72 16 16 C -0.53 -30.48 8.37 25.60 0.21 -30.26 16 17 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 18 C 0.02 1.11 5.30 84.65 0.45 1.56 16 19 N -0.91 -50.79 11.32 21.45 0.24 -50.55 16 20 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.06 7.90 -2.38 -0.02 1.04 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 32 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.41 11.35 7.76 -92.71 -0.72 10.63 16 34 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 35 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -65.75 301.94 2.55 -63.20 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.33 Total: 17.11 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 3.79 Total: -9.48 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -1.93 Total: -76.43 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.66 Total: -41.21 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.75 2.55 -63.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597764708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.466 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds