Wall clock time and date at job start Mon Mar 30 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46503 * 2 1 4 4 O 1.42896 * 109.47269 * 240.00277 * 2 1 3 5 5 C 1.52994 * 109.47025 * 120.00038 * 2 1 3 6 6 C 1.53006 * 109.46909 * 185.00319 * 5 2 1 7 7 C 1.50698 * 109.47057 * 179.97438 * 6 5 2 8 8 O 1.21279 * 120.00240 * 5.05324 * 7 6 5 9 9 N 1.34781 * 120.00178 * 185.04852 * 7 6 5 10 10 C 1.46499 * 119.99515 * 356.32031 * 9 7 6 11 11 C 1.50698 * 109.47171 * 90.00263 * 10 9 7 12 12 H 1.07998 * 120.00100 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00442 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99651 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00373 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47098 * 89.99956 * 15 13 11 17 17 H 1.48494 * 109.47154 * 209.99854 * 15 13 11 18 18 H 1.48498 * 109.47235 * 330.00293 * 15 13 11 19 19 C 1.46494 * 120.00348 * 176.32146 * 9 7 6 20 20 C 1.53004 * 117.49737 * 17.09660 * 19 9 7 21 21 C 1.53001 * 117.49660 * 308.43961 * 19 9 7 22 22 H 1.08994 * 109.47615 * 299.99762 * 1 2 3 23 23 H 1.09001 * 109.47220 * 60.00193 * 1 2 3 24 24 H 1.09005 * 109.46950 * 179.97438 * 1 2 3 25 25 H 0.96693 * 114.00279 * 299.99924 * 4 2 1 26 26 H 1.08999 * 109.47205 * 65.00870 * 5 2 1 27 27 H 1.08996 * 109.47294 * 305.00060 * 5 2 1 28 28 H 1.09002 * 109.47452 * 60.00096 * 6 5 2 29 29 H 1.08996 * 109.46930 * 299.99963 * 6 5 2 30 30 H 1.09003 * 109.46768 * 209.99575 * 10 9 7 31 31 H 1.08993 * 109.47446 * 329.99859 * 10 9 7 32 32 H 0.96995 * 120.00082 * 180.02562 * 14 13 11 33 33 H 1.08998 * 115.55615 * 162.77026 * 19 9 7 34 34 H 1.08997 * 117.49770 * 0.02562 * 20 19 9 35 35 H 1.09006 * 117.49556 * 145.02236 * 20 19 9 36 36 H 1.08998 * 117.49980 * 214.97443 * 21 19 9 37 37 H 1.08996 * 117.50512 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7212 1.2492 6 6 3.5648 -0.6132 1.3137 7 6 4.0671 -1.3230 2.5444 8 8 3.2942 -1.9398 3.2467 9 7 5.3753 -1.2726 2.8648 10 6 6.3219 -0.5963 1.9744 11 6 6.4292 0.8553 2.3646 12 1 5.8499 1.2361 3.1927 13 6 7.2669 1.6974 1.6644 14 7 7.9727 1.2336 0.6563 15 14 7.3993 3.4969 2.1477 16 1 8.4808 3.6614 3.1520 17 1 7.7123 4.3105 0.9456 18 1 6.1103 3.9493 2.7298 19 6 5.8507 -1.8941 4.1033 20 6 4.9301 -2.9102 4.7824 21 6 5.1298 -1.5244 5.4011 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7211 -1.5951 -1.2330 26 1 1.7517 -1.7715 1.2055 27 1 1.6053 -0.2618 2.1369 28 1 3.8532 0.4371 1.3574 29 1 3.9994 -1.0726 0.4259 30 1 7.3007 -1.0684 2.0586 31 1 5.9698 -0.6709 0.9456 32 1 8.5623 1.8258 0.1639 33 1 6.9245 -2.0730 4.1575 34 1 3.9710 -3.1165 4.3074 35 1 5.3984 -3.7573 5.2836 36 1 5.7292 -1.4605 6.3092 37 1 4.3021 -0.8184 5.3336 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092159064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:29 Heat of formation + Delta-G solvation = -67.099735 kcal Electronic energy + Delta-G solvation = -17932.146585 eV Core-core repulsion = 15096.297002 eV Total energy + Delta-G solvation = -2835.849583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64702 -37.67389 -35.77087 -34.21337 -32.49103 -32.06199 -29.72133 -27.05037 -24.75450 -22.84276 -21.95643 -21.77455 -20.88821 -18.25516 -16.73468 -16.27250 -16.00200 -15.78691 -15.19125 -14.61048 -14.45902 -14.16647 -13.48557 -13.20831 -12.75852 -12.50614 -12.26334 -12.15312 -11.83834 -11.65457 -11.25484 -11.13451 -10.91385 -10.73571 -10.62606 -10.51729 -10.46109 -10.21650 -9.83860 -9.67994 -9.57227 -8.63338 -8.46596 -7.51988 -6.17514 -4.25040 3.23067 3.29368 3.31076 3.36396 3.85597 4.32909 4.52671 4.60223 4.92018 5.12328 5.15282 5.23955 5.42171 5.52444 5.56909 5.61575 5.68889 5.80995 5.91838 6.01623 6.14472 6.19859 6.23891 6.30708 6.49329 6.53031 6.66359 6.81460 6.96707 7.18054 7.65268 7.77523 7.79457 8.05525 8.34270 8.80504 9.04339 9.42647 10.89059 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.009169 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.015598 B = 3052.881939 C = 4441.512689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.100 0.900 4 O -0.561 6.561 5 C -0.131 4.131 6 C -0.132 4.132 7 C 0.517 3.483 8 O -0.572 6.572 9 N -0.568 5.568 10 C 0.239 3.761 11 C -0.537 4.537 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.088 3.912 20 C -0.208 4.208 21 C -0.191 4.191 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.370 0.630 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.120 0.880 34 H 0.144 0.856 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 -4.032 0.623 9.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.040 3.960 3 H 0.118 0.882 4 O -0.366 6.366 5 C -0.169 4.169 6 C -0.172 4.172 7 C 0.307 3.693 8 O -0.456 6.456 9 N -0.295 5.295 10 C 0.119 3.881 11 C -0.575 4.575 12 H 0.079 0.921 13 C -0.138 4.138 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.018 4.018 20 C -0.246 4.246 21 C -0.230 4.230 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.217 0.783 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.058 -3.685 0.691 9.803 hybrid contribution 0.181 0.676 0.467 0.841 sum -8.878 -3.009 1.157 9.445 Atomic orbital electron populations 1.22488 0.96847 1.02275 1.02429 1.21992 0.92310 0.97132 0.84590 0.88218 1.86615 1.77288 1.28710 1.44032 1.22036 0.95412 1.01343 0.98118 1.21583 0.95384 1.03448 0.96776 1.20674 0.81715 0.80063 0.86835 1.90343 1.56397 1.44866 1.53963 1.47687 1.07922 1.52787 1.21140 1.19473 0.87905 0.91910 0.88809 1.21472 1.25906 0.93840 1.16296 0.92085 1.24943 0.95151 0.98998 0.94720 1.69919 1.26889 1.36082 1.19995 0.86514 0.78593 0.84427 0.78058 1.20541 1.21031 1.19787 1.21483 0.96218 1.00232 0.83833 1.24092 1.04917 0.91968 1.03588 1.23103 1.03697 0.99356 0.96826 0.91641 0.92117 0.92494 0.78297 0.91413 0.90892 0.87855 0.88793 0.94638 0.93984 0.92493 0.86186 0.83863 0.90542 0.89505 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.53 37.16 0.35 -1.57 16 2 C 0.10 1.29 3.59 -26.73 -0.10 1.20 16 3 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 4 O -0.56 -7.75 12.87 -35.23 -0.45 -8.21 16 5 C -0.13 -1.94 4.20 -26.73 -0.11 -2.06 16 6 C -0.13 -2.40 4.14 -27.88 -0.12 -2.52 16 7 C 0.52 10.64 7.43 -10.98 -0.08 10.56 16 8 O -0.57 -12.12 11.86 5.56 0.07 -12.05 16 9 N -0.57 -12.21 2.82 -167.48 -0.47 -12.69 16 10 C 0.24 5.73 4.95 -5.19 -0.03 5.70 16 11 C -0.54 -14.02 8.98 -34.44 -0.31 -14.33 16 12 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 15 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.09 1.72 6.62 -67.93 -0.45 1.27 16 20 C -0.21 -3.70 9.64 -26.69 -0.26 -3.95 16 21 C -0.19 -3.48 9.90 -26.69 -0.26 -3.74 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.37 3.72 9.04 45.56 0.41 4.13 16 26 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.10 2.04 7.64 -51.93 -0.40 1.65 16 29 H 0.09 1.71 7.23 -51.93 -0.38 1.34 16 30 H 0.04 0.89 8.03 -51.93 -0.42 0.48 16 31 H 0.04 1.04 6.60 -51.93 -0.34 0.69 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.12 2.21 8.09 -51.93 -0.42 1.79 16 34 H 0.14 2.83 4.96 -53.39 -0.26 2.56 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.78 7.83 -51.93 -0.41 1.38 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -28.94 306.73 -7.11 -36.05 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.13 Total: 8.37 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.45 Total: -7.82 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.26 Total: -36.63 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.39 Total: -20.26 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.94 -7.11 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092159064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.050 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds