Wall clock time and date at job start Mon Mar 30 2020 04:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.57752 * 2 1 4 4 C 1.53115 * 109.52003 * 120.16312 * 2 1 3 5 5 C 1.53043 * 109.28098 * 177.55750 * 4 2 1 6 6 N 1.46854 * 109.51968 * 300.82082 * 5 4 2 7 7 C 1.46898 * 110.99676 * 185.83643 * 6 5 4 8 8 C 1.52999 * 109.47230 * 75.67383 * 7 6 5 9 9 C 1.50707 * 109.47208 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99741 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99632 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00392 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47565 * 89.99496 * 13 11 9 15 15 H 1.48504 * 109.47419 * 210.00069 * 13 11 9 16 16 H 1.48503 * 109.47051 * 329.99488 * 13 11 9 17 17 C 1.46845 * 111.19834 * 61.74023 * 6 5 4 18 18 H 1.09000 * 109.46573 * 58.27119 * 17 6 5 19 19 C 1.50699 * 109.45922 * 178.23961 * 17 6 5 20 20 O 1.20824 * 120.00235 * 28.81236 * 19 17 6 21 21 O 1.34234 * 120.00073 * 208.80939 * 19 17 6 22 22 C 1.53035 * 109.52338 * 298.25653 * 17 6 5 23 23 H 1.09001 * 109.47164 * 180.15235 * 1 2 3 24 24 H 1.08999 * 109.47268 * 300.16063 * 1 2 3 25 25 H 1.09005 * 109.47124 * 60.15869 * 1 2 3 26 26 H 1.09001 * 109.50262 * 297.49427 * 4 2 1 27 27 H 1.09003 * 109.50834 * 57.62046 * 4 2 1 28 28 H 1.09000 * 109.46209 * 60.83120 * 5 4 2 29 29 H 1.09000 * 109.46586 * 180.81274 * 5 4 2 30 30 H 1.08997 * 109.47299 * 195.67957 * 7 6 5 31 31 H 1.09008 * 109.47336 * 315.67903 * 7 6 5 32 32 H 1.08998 * 109.47234 * 299.99729 * 8 7 6 33 33 H 1.09003 * 109.46898 * 60.00311 * 8 7 6 34 34 H 0.97006 * 119.99815 * 179.97438 * 12 11 9 35 35 H 0.96693 * 117.00180 * 180.02562 * 21 19 17 36 36 H 1.09002 * 109.50396 * 299.24032 * 22 17 6 37 37 H 1.09000 * 109.50603 * 179.12300 * 22 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7251 1.2477 5 6 3.5708 -0.7754 1.2117 6 7 4.0102 -1.4791 -0.0001 7 6 5.4669 -1.6680 0.0000 8 6 5.8353 -2.7930 0.9693 9 6 7.3298 -2.9873 0.9688 10 1 7.9543 -2.3698 0.3404 11 6 7.8996 -3.9533 1.7707 12 7 9.2037 -4.1231 1.7699 13 14 6.8192 -5.0218 2.8571 14 1 6.4118 -6.2374 2.1077 15 1 7.5769 -5.4193 4.0709 16 1 5.6099 -4.2582 3.2567 17 6 3.5708 -0.7753 -1.2117 18 1 3.9674 0.2400 -1.2060 19 6 4.0782 -1.5055 -2.4283 20 8 4.2608 -2.6991 -2.3841 21 8 4.3272 -0.8300 -3.5613 22 6 2.0417 -0.7250 -1.2478 23 1 -0.3633 -1.0277 0.0027 24 1 -0.3634 0.5163 0.8885 25 1 -0.3633 0.5114 -0.8914 26 1 1.7161 -0.1891 2.1393 27 1 1.6446 -1.7401 1.2673 28 1 3.9675 0.2399 1.2060 29 1 3.9377 -1.3038 2.0916 30 1 5.7993 -1.9303 -1.0044 31 1 5.9532 -0.7443 0.3139 32 1 5.5030 -2.5306 1.9736 33 1 5.3492 -3.7168 0.6553 34 1 9.6047 -4.8026 2.3344 35 1 4.6510 -1.3415 -4.3153 36 1 1.6446 -1.7400 -1.2675 37 1 1.7161 -0.1890 -2.1393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229298408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:08 Heat of formation + Delta-G solvation = -101.947472 kcal Electronic energy + Delta-G solvation = -18132.630352 eV Core-core repulsion = 15295.269658 eV Total energy + Delta-G solvation = -2837.360694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52713 -38.52499 -35.94394 -34.98229 -32.81283 -31.36782 -30.30389 -27.68198 -24.82663 -24.13110 -22.66701 -20.81160 -20.02257 -19.60872 -17.87841 -16.97101 -16.26227 -15.71293 -15.18854 -14.85291 -14.38887 -14.08169 -13.89933 -13.48276 -13.14337 -12.71574 -12.63243 -12.57027 -12.01558 -11.92363 -11.38992 -11.37843 -11.26719 -11.05055 -10.79854 -10.73340 -10.35653 -10.10578 -9.99437 -9.67552 -9.63060 -9.15227 -8.47405 -7.96024 -5.99550 -3.97145 2.40395 3.03349 3.37898 3.43901 3.49280 4.16489 4.51512 4.69985 4.73655 4.76073 5.13834 5.19726 5.35383 5.39914 5.45112 5.56193 5.57205 5.61524 5.68752 5.85595 5.91342 6.02856 6.06715 6.10768 6.23786 6.29967 6.41971 6.63000 6.80841 7.10379 7.25421 7.52522 7.64120 7.87541 8.12238 8.57652 9.03928 9.63209 11.13945 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.007118 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.200806 B = 3932.939283 C = 4696.825557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.115 4.115 5 C 0.058 3.942 6 N -0.523 5.523 7 C 0.065 3.935 8 C 0.000 4.000 9 C -0.519 4.519 10 H 0.069 0.931 11 C 0.068 3.932 12 N -0.905 5.905 13 Si 0.882 3.118 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C 0.098 3.902 18 H 0.067 0.933 19 C 0.476 3.524 20 O -0.481 6.481 21 O -0.524 6.524 22 C -0.101 4.101 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.015 0.985 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.408 0.592 36 H 0.079 0.921 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 9.980 -5.524 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.070 4.070 6 N -0.250 5.250 7 C -0.061 4.061 8 C -0.038 4.038 9 C -0.558 4.558 10 H 0.087 0.913 11 C -0.133 4.133 12 N -0.545 5.545 13 Si 0.710 3.290 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.189 1.189 17 C -0.012 4.012 18 H 0.085 0.915 19 C 0.316 3.684 20 O -0.365 6.365 21 O -0.337 6.337 22 C -0.139 4.139 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.266 0.734 36 H 0.098 0.902 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.006 9.292 -5.100 20.039 hybrid contribution 0.350 -0.216 0.010 0.411 sum -16.656 9.076 -5.090 19.639 Atomic orbital electron populations 1.21793 0.94820 1.02018 1.01529 1.21159 0.95727 0.99253 0.94768 0.91188 1.21723 0.95208 1.01379 0.96940 1.22149 0.94995 0.96522 0.93297 1.61909 1.16028 1.47761 0.99332 1.22281 0.82752 0.99226 1.01832 1.19476 0.96746 0.93874 0.93708 1.21071 0.90316 1.19089 1.25319 0.91312 1.24974 0.94843 0.96860 0.96658 1.69922 1.09918 1.34307 1.40312 0.86735 0.80936 0.81212 0.80159 1.20229 1.21551 1.18914 1.21139 0.96918 0.95785 0.87321 0.91528 1.23299 0.74511 0.86674 0.83938 1.90784 1.46348 1.16149 1.83198 1.84513 1.79149 1.46705 1.23292 1.21626 0.91385 1.02371 0.98483 0.92461 0.92564 0.92792 0.91421 0.90782 0.94883 0.89298 0.91562 0.95201 0.96682 0.95840 0.92787 0.73376 0.90235 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 37.16 0.34 -0.86 16 2 C -0.09 -0.93 2.79 -90.50 -0.25 -1.18 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.35 5.38 -26.65 -0.14 -1.50 16 5 C 0.06 0.87 5.29 -3.83 -0.02 0.85 16 6 N -0.52 -9.29 4.18 -228.07 -0.95 -10.25 16 7 C 0.07 1.40 4.54 -3.83 -0.02 1.39 16 8 C 0.00 -0.01 4.15 -27.88 -0.12 -0.12 16 9 C -0.52 -15.42 9.66 -34.44 -0.33 -15.76 16 10 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 13 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 16 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 17 C 0.10 1.45 2.34 -68.88 -0.16 1.29 16 18 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 19 C 0.48 7.61 6.13 36.01 0.22 7.83 16 20 O -0.48 -9.62 16.19 -18.75 -0.30 -9.93 16 21 O -0.52 -6.48 13.42 -39.27 -0.53 -7.00 16 22 C -0.10 -1.18 4.64 -26.65 -0.12 -1.31 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.46 6.71 -51.93 -0.35 1.12 16 30 H 0.07 1.51 5.67 -51.93 -0.29 1.21 16 31 H 0.03 0.63 8.00 -51.92 -0.42 0.21 16 32 H 0.01 0.37 5.89 -51.93 -0.31 0.07 16 33 H 0.02 0.62 7.57 -51.93 -0.39 0.23 16 34 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 35 H 0.41 3.37 9.10 45.56 0.41 3.79 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 296.24 15.07 4.46 4.46 Total: -1.00 -34.36 296.24 -7.07 -41.43 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.16 Total: -1.37 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.70 Total: -7.43 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.18 Total: -38.15 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.83 Total: -16.93 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.36 -7.07 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229298408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.515 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds