Wall clock time and date at job start Mon Mar 30 2020 04:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.57752 * 2 1 4 4 C 1.53115 * 109.52003 * 120.16312 * 2 1 3 5 5 C 1.53043 * 109.28098 * 177.55750 * 4 2 1 6 6 N 1.46854 * 109.51968 * 300.82082 * 5 4 2 7 7 C 1.46898 * 110.99676 * 185.83643 * 6 5 4 8 8 C 1.52999 * 109.47230 * 75.67383 * 7 6 5 9 9 C 1.50707 * 109.47208 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99741 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99632 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00392 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47565 * 89.99496 * 13 11 9 15 15 H 1.48504 * 109.47419 * 210.00069 * 13 11 9 16 16 H 1.48503 * 109.47051 * 329.99488 * 13 11 9 17 17 C 1.46845 * 111.19834 * 61.74023 * 6 5 4 18 18 H 1.09000 * 109.46573 * 58.27119 * 17 6 5 19 19 C 1.50699 * 109.45922 * 178.23961 * 17 6 5 20 20 O 1.20824 * 120.00235 * 28.81236 * 19 17 6 21 21 O 1.34234 * 120.00073 * 208.80939 * 19 17 6 22 22 C 1.53035 * 109.52338 * 298.25653 * 17 6 5 23 23 H 1.09001 * 109.47164 * 180.15235 * 1 2 3 24 24 H 1.08999 * 109.47268 * 300.16063 * 1 2 3 25 25 H 1.09005 * 109.47124 * 60.15869 * 1 2 3 26 26 H 1.09001 * 109.50262 * 297.49427 * 4 2 1 27 27 H 1.09003 * 109.50834 * 57.62046 * 4 2 1 28 28 H 1.09000 * 109.46209 * 60.83120 * 5 4 2 29 29 H 1.09000 * 109.46586 * 180.81274 * 5 4 2 30 30 H 1.08997 * 109.47299 * 195.67957 * 7 6 5 31 31 H 1.09008 * 109.47336 * 315.67903 * 7 6 5 32 32 H 1.08998 * 109.47234 * 299.99729 * 8 7 6 33 33 H 1.09003 * 109.46898 * 60.00311 * 8 7 6 34 34 H 0.97006 * 119.99815 * 179.97438 * 12 11 9 35 35 H 0.96693 * 117.00180 * 180.02562 * 21 19 17 36 36 H 1.09002 * 109.50396 * 299.24032 * 22 17 6 37 37 H 1.09000 * 109.50603 * 179.12300 * 22 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7251 1.2477 5 6 3.5708 -0.7754 1.2117 6 7 4.0102 -1.4791 -0.0001 7 6 5.4669 -1.6680 0.0000 8 6 5.8353 -2.7930 0.9693 9 6 7.3298 -2.9873 0.9688 10 1 7.9543 -2.3698 0.3404 11 6 7.8996 -3.9533 1.7707 12 7 9.2037 -4.1231 1.7699 13 14 6.8192 -5.0218 2.8571 14 1 6.4118 -6.2374 2.1077 15 1 7.5769 -5.4193 4.0709 16 1 5.6099 -4.2582 3.2567 17 6 3.5708 -0.7753 -1.2117 18 1 3.9674 0.2400 -1.2060 19 6 4.0782 -1.5055 -2.4283 20 8 4.2608 -2.6991 -2.3841 21 8 4.3272 -0.8300 -3.5613 22 6 2.0417 -0.7250 -1.2478 23 1 -0.3633 -1.0277 0.0027 24 1 -0.3634 0.5163 0.8885 25 1 -0.3633 0.5114 -0.8914 26 1 1.7161 -0.1891 2.1393 27 1 1.6446 -1.7401 1.2673 28 1 3.9675 0.2399 1.2060 29 1 3.9377 -1.3038 2.0916 30 1 5.7993 -1.9303 -1.0044 31 1 5.9532 -0.7443 0.3139 32 1 5.5030 -2.5306 1.9736 33 1 5.3492 -3.7168 0.6553 34 1 9.6047 -4.8026 2.3344 35 1 4.6510 -1.3415 -4.3153 36 1 1.6446 -1.7400 -1.2675 37 1 1.7161 -0.1890 -2.1393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229298408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:07 Heat of formation + Delta-G solvation = -126.961700 kcal Electronic energy + Delta-G solvation = -18133.715050 eV Core-core repulsion = 15295.269658 eV Total energy + Delta-G solvation = -2838.445393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75629 -39.67379 -37.13382 -36.38212 -34.82367 -32.65188 -31.91834 -28.97579 -26.03855 -25.73621 -23.88817 -22.25058 -21.49650 -20.66181 -19.09342 -19.05724 -17.61599 -16.99269 -16.45616 -16.27418 -16.00044 -15.47813 -14.94558 -14.76226 -14.64642 -14.45633 -13.97222 -13.72791 -13.47902 -13.07210 -12.76533 -12.62534 -12.51960 -12.41540 -12.08400 -11.92104 -11.89511 -11.67118 -11.48938 -11.47815 -11.11486 -11.06024 -10.78228 -9.32871 -8.33220 -6.37358 1.16249 1.33525 1.35422 1.48072 1.94167 2.34035 2.85289 3.02393 3.73345 3.84827 3.87581 4.06280 4.12083 4.30376 4.40174 4.42334 4.50790 4.71856 4.75950 4.79137 4.89709 4.90982 5.00786 5.05450 5.17134 5.23420 5.25982 5.38804 5.44582 5.56052 5.58548 5.61090 5.99995 6.09765 6.24542 6.68735 6.99820 7.27246 8.83626 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.007118 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.200806 B = 3932.939283 C = 4696.825557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.084 0.916 4 C -0.109 4.109 5 C 0.053 3.947 6 N -0.537 5.537 7 C 0.079 3.921 8 C 0.009 3.991 9 C -0.534 4.534 10 H 0.030 0.970 11 C 0.009 3.991 12 N -0.949 5.949 13 Si 0.952 3.048 14 H -0.273 1.273 15 H -0.277 1.277 16 H -0.246 1.246 17 C 0.094 3.906 18 H 0.084 0.916 19 C 0.479 3.521 20 O -0.531 6.531 21 O -0.511 6.511 22 C -0.095 4.095 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.009 0.991 34 H 0.268 0.732 35 H 0.426 0.574 36 H 0.064 0.936 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.566 11.134 -5.061 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.074 4.074 6 N -0.264 5.264 7 C -0.048 4.048 8 C -0.029 4.029 9 C -0.573 4.573 10 H 0.048 0.952 11 C -0.188 4.188 12 N -0.590 5.590 13 Si 0.775 3.225 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.169 1.169 17 C -0.015 4.015 18 H 0.102 0.898 19 C 0.321 3.679 20 O -0.419 6.419 21 O -0.324 6.324 22 C -0.132 4.132 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.288 0.712 36 H 0.083 0.917 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.745 10.486 -4.665 22.838 hybrid contribution 1.274 -0.500 -0.251 1.391 sum -18.471 9.987 -4.916 21.566 Atomic orbital electron populations 1.21752 0.93057 1.02105 1.02785 1.21166 0.97067 0.99331 0.92850 0.89788 1.21710 0.92440 1.01472 0.99016 1.22262 0.97422 0.96425 0.91264 1.61764 1.13009 1.49958 1.01683 1.21885 0.85799 0.97643 0.99482 1.19311 0.93573 0.94789 0.95231 1.21384 0.92436 1.18724 1.24718 0.95190 1.25947 0.96289 0.98338 0.98270 1.70059 1.11965 1.35377 1.41562 0.85637 0.79523 0.79111 0.78244 1.19833 1.20262 1.16937 1.21360 0.99054 0.95713 0.85414 0.89839 1.23642 0.73306 0.86079 0.84915 1.90768 1.48744 1.18263 1.84134 1.84466 1.78472 1.46313 1.23181 1.21667 0.88705 1.02276 1.00599 0.92989 0.91387 0.91519 0.89060 0.91929 0.93647 0.91240 0.93474 0.95277 0.95748 0.97218 0.92342 0.71250 0.91674 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.09 -1.45 2.79 -10.71 -0.03 -1.48 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 4 C -0.11 -2.26 5.38 30.65 0.16 -2.10 16 5 C 0.05 1.50 5.29 86.33 0.46 1.96 16 6 N -0.54 -18.68 4.18 -875.48 -3.66 -22.34 16 7 C 0.08 3.46 4.54 86.30 0.39 3.85 16 8 C 0.01 0.45 4.15 29.85 0.12 0.58 16 9 C -0.53 -32.76 9.66 25.60 0.25 -32.52 16 10 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 11 C 0.01 0.53 5.47 84.65 0.46 0.99 16 12 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 13 Si 0.95 46.84 27.47 68.60 1.88 48.72 16 14 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 17 C 0.09 2.62 2.34 44.19 0.10 2.72 16 18 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 19 C 0.48 14.97 6.13 71.24 0.44 15.40 16 20 O -0.53 -21.58 16.19 21.97 0.36 -21.23 16 21 O -0.51 -11.80 13.42 -51.45 -0.69 -12.49 16 22 C -0.09 -1.96 4.64 30.65 0.14 -1.82 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 2.22 6.71 -2.39 -0.02 2.20 16 30 H 0.05 2.21 5.67 -2.39 -0.01 2.20 16 31 H 0.03 1.24 8.00 -2.38 -0.02 1.22 16 32 H 0.02 1.20 5.89 -2.39 -0.01 1.19 16 33 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 34 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 35 H 0.43 6.46 9.10 -74.06 -0.67 5.79 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -76.32 296.24 1.67 -74.65 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.32 Total: 7.49 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.16 Total: -13.55 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -3.36 Total: -83.59 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.33 Total: -33.72 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.88 Total: 48.72 kcal Total: -76.32 1.67 -74.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229298408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.312 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds