Wall clock time and date at job start Mon Mar 30 2020 04:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45826 * 2 1 4 4 C 1.53036 * 109.46254 * 240.02823 * 2 1 3 5 5 C 1.53116 * 109.28272 * 299.16300 * 4 2 1 6 6 H 1.08997 * 109.51840 * 62.31026 * 5 4 2 7 7 C 1.50697 * 109.52481 * 182.43971 * 5 4 2 8 8 O 1.20833 * 119.99850 * 0.02562 * 7 5 4 9 9 O 1.34228 * 119.99989 * 179.97438 * 7 5 4 10 10 C 1.53119 * 109.15896 * 302.34617 * 5 4 2 11 11 C 1.53038 * 109.27902 * 57.65620 * 10 5 4 12 12 N 1.46847 * 109.52087 * 300.81725 * 11 10 5 13 13 C 1.46902 * 110.99989 * 185.83951 * 12 11 10 14 14 C 1.53001 * 109.47217 * 45.79270 * 13 12 11 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 H 1.08996 * 109.47757 * 300.02047 * 1 2 3 24 24 H 1.09000 * 109.47383 * 60.02504 * 1 2 3 25 25 H 1.09004 * 109.47123 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.49820 * 59.10967 * 4 2 1 27 27 H 1.09003 * 109.50154 * 179.17776 * 4 2 1 28 28 H 0.96706 * 116.99527 * 180.02562 * 9 7 5 29 29 H 1.09001 * 109.50318 * 177.59010 * 10 5 4 30 30 H 1.09002 * 109.50446 * 297.71406 * 10 5 4 31 31 H 1.09002 * 109.46382 * 180.80442 * 11 10 5 32 32 H 1.08999 * 109.46626 * 60.83318 * 11 10 5 33 33 H 1.09000 * 109.46932 * 285.79061 * 13 12 11 34 34 H 1.09002 * 109.46978 * 165.78999 * 13 12 11 35 35 H 1.08998 * 109.46837 * 59.99958 * 14 13 12 36 36 H 1.09002 * 109.46926 * 299.99762 * 14 13 12 37 37 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.5444 -2.1695 -1.2357 6 1 0.4550 -2.1821 -1.2684 7 6 2.0927 -2.9012 -2.4336 8 8 2.8073 -2.3243 -3.2189 9 8 1.7882 -4.1940 -2.6277 10 6 2.0270 -2.8532 0.0465 11 6 1.5174 -2.0706 1.2590 12 7 2.0193 -0.6918 1.1994 13 6 1.6650 0.0504 2.4166 14 6 1.9651 -0.8111 3.6448 15 6 1.6023 -0.0495 4.8935 16 1 1.1985 0.9494 4.8187 17 6 1.7859 -0.6278 6.1316 18 7 2.2781 -1.8440 6.2228 19 14 1.3433 0.3193 7.6798 20 1 -0.0719 0.0479 8.0384 21 1 2.2273 -0.1109 8.7927 22 1 1.5228 1.7735 7.4386 23 1 -0.3634 0.5141 0.8897 24 1 -0.3634 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6638 -0.2162 -2.1398 27 1 3.1299 -0.7085 -1.2580 28 1 2.1638 -4.6208 -3.4099 29 1 1.6415 -3.8721 0.0830 30 1 3.1167 -2.8750 0.0593 31 1 1.8712 -2.5467 2.1734 32 1 0.4274 -2.0609 1.2531 33 1 0.6034 0.2966 2.3960 34 1 2.2501 0.9688 2.4653 35 1 3.0267 -1.0573 3.6654 36 1 1.3800 -1.7295 3.5961 37 1 2.4068 -2.2510 7.0939 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235340189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:52 Heat of formation + Delta-G solvation = -102.508825 kcal Electronic energy + Delta-G solvation = -17908.535822 eV Core-core repulsion = 15071.150785 eV Total energy + Delta-G solvation = -2837.385036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67614 -38.98792 -36.22766 -34.35142 -32.71060 -31.75834 -29.28514 -27.20406 -25.75607 -23.80774 -22.79044 -21.46346 -19.98896 -18.40058 -18.07321 -17.02594 -16.42529 -15.83717 -15.01639 -14.76623 -14.29242 -14.11328 -14.05149 -13.29003 -13.07864 -12.88884 -12.61053 -12.15031 -11.84941 -11.62420 -11.49026 -11.25690 -11.11265 -10.94771 -10.85263 -10.63598 -10.51711 -10.24627 -10.11738 -9.82623 -9.30303 -9.08668 -8.34982 -7.64782 -6.01528 -4.03641 2.13988 2.97849 3.31164 3.37761 3.41042 4.35521 4.51675 4.61931 4.82841 4.98598 5.22574 5.34767 5.35683 5.40878 5.56392 5.60337 5.74948 5.79872 5.88988 5.99968 6.10734 6.22129 6.25879 6.31442 6.38286 6.39874 6.58564 6.64103 6.94216 7.50774 7.61032 7.78558 7.81553 7.85073 8.03897 8.41963 9.03040 9.60242 11.09832 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045608 B = 0.004927 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.774029 B = 5682.149841 C = 6046.053590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.080 3.920 3 H 0.084 0.916 4 C -0.092 4.092 5 C -0.081 4.081 6 H 0.106 0.894 7 C 0.484 3.516 8 O -0.519 6.519 9 O -0.516 6.516 10 C -0.106 4.106 11 C 0.048 3.952 12 N -0.533 5.533 13 C 0.059 3.941 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.406 0.594 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.036 0.964 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 -2.212 -15.544 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.029 4.029 3 H 0.102 0.898 4 C -0.130 4.130 5 C -0.100 4.100 6 H 0.124 0.876 7 C 0.327 3.673 8 O -0.407 6.407 9 O -0.328 6.328 10 C -0.144 4.144 11 C -0.080 4.080 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.264 0.736 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.419 -2.006 -15.300 15.620 hybrid contribution -0.907 0.200 0.390 1.007 sum -3.326 -1.806 -14.910 15.383 Atomic orbital electron populations 1.22545 0.98108 1.02207 1.02216 1.21647 0.92469 0.98290 0.90526 0.89774 1.21509 1.02385 0.91681 0.97433 1.21233 1.02161 0.95584 0.91047 0.87607 1.23746 0.77321 0.79708 0.86540 1.90700 1.35653 1.68053 1.46264 1.84577 1.71333 1.26586 1.50275 1.21636 1.02208 0.98719 0.91803 1.22220 0.97471 0.89855 0.98466 1.62283 1.59041 1.01991 1.02433 1.22368 0.97605 0.97686 0.89084 1.19249 0.97714 0.94741 0.89975 1.21182 1.42463 1.01269 0.91091 0.92779 1.24986 0.95219 0.94954 0.99098 1.69962 1.45036 1.13972 1.24336 0.86602 0.78232 0.80271 0.82943 1.20732 1.21203 1.19873 0.91759 0.92607 0.92211 0.91232 0.90197 0.73606 0.90564 0.90667 0.88206 0.94625 0.95578 0.91964 0.95722 0.96144 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 8.20 37.16 0.30 -2.17 16 2 C 0.08 1.13 2.93 -67.72 -0.20 0.93 16 3 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 4 C -0.09 -1.19 4.20 -26.65 -0.11 -1.30 16 5 C -0.08 -0.99 2.39 -91.65 -0.22 -1.20 16 6 H 0.11 1.16 6.56 -51.93 -0.34 0.82 16 7 C 0.48 5.91 7.63 36.00 0.27 6.19 16 8 O -0.52 -7.71 16.73 -18.76 -0.31 -8.03 16 9 O -0.52 -4.95 13.36 -39.25 -0.52 -5.47 16 10 C -0.11 -1.41 5.31 -26.65 -0.14 -1.55 16 11 C 0.05 0.78 4.55 -3.83 -0.02 0.76 16 12 N -0.53 -9.26 4.75 -226.68 -1.08 -10.33 16 13 C 0.06 1.21 5.09 -3.82 -0.02 1.19 16 14 C 0.02 0.51 4.22 -27.89 -0.12 0.39 16 15 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.06 0.91 6.36 -51.93 -0.33 0.58 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.75 4.80 -51.93 -0.25 0.51 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 28 H 0.41 2.12 9.10 45.56 0.41 2.53 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.89 5.81 -51.93 -0.30 1.59 16 32 H 0.04 0.57 6.19 -51.93 -0.32 0.25 16 33 H 0.03 0.52 6.07 -51.93 -0.32 0.21 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -31.35 290.24 -7.17 -38.51 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.68 Total: 0.29 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.66 Total: -10.03 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.34 Total: -36.06 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.84 Total: -13.50 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.35 -7.17 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235340189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.995 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds