Wall clock time and date at job start Mon Mar 30 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.57205 * 2 1 4 4 C 1.53093 * 109.52416 * 239.84185 * 2 1 3 5 5 O 1.42898 * 109.41502 * 182.48342 * 4 2 1 6 6 C 1.42904 * 114.09586 * 61.15896 * 5 4 2 7 7 C 1.53087 * 109.41639 * 298.84028 * 6 5 4 8 8 C 1.53173 * 109.16492 * 57.60941 * 7 6 5 9 9 H 1.08999 * 109.55044 * 183.06412 * 8 7 6 10 10 C 1.50703 * 109.54215 * 62.88329 * 8 7 6 11 11 O 1.21279 * 120.00480 * 300.57628 * 10 8 7 12 12 N 1.34774 * 119.99853 * 120.57475 * 10 8 7 13 13 C 1.46506 * 120.00157 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47071 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47114 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99771 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00205 * 180.27194 * 15 14 13 18 18 N 1.31516 * 119.99903 * 359.72603 * 17 15 14 19 19 Si 1.86803 * 120.00136 * 179.72701 * 17 15 14 20 20 H 1.48496 * 109.46969 * 60.00027 * 19 17 15 21 21 H 1.48503 * 109.47170 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46724 * 299.99913 * 19 17 15 23 23 H 1.09002 * 109.47618 * 294.23221 * 1 2 3 24 24 H 1.09004 * 109.47655 * 54.23813 * 1 2 3 25 25 H 1.09004 * 109.47162 * 174.22889 * 1 2 3 26 26 H 1.09003 * 109.48019 * 62.49992 * 4 2 1 27 27 H 1.09000 * 109.48209 * 302.46823 * 4 2 1 28 28 H 1.09004 * 109.48121 * 178.85965 * 6 5 4 29 29 H 1.08996 * 109.49349 * 58.83242 * 6 5 4 30 30 H 1.09001 * 109.52420 * 297.70160 * 7 6 5 31 31 H 1.08996 * 109.57535 * 177.54645 * 7 6 5 32 32 H 0.97005 * 119.99870 * 0.02562 * 12 10 8 33 33 H 1.08991 * 109.46967 * 60.00012 * 13 12 10 34 34 H 1.09003 * 109.46688 * 299.99572 * 13 12 10 35 35 H 1.08995 * 109.47685 * 59.99719 * 14 13 12 36 36 H 1.09003 * 109.47367 * 299.99886 * 14 13 12 37 37 H 0.97003 * 120.00182 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7742 -1.2163 6 6 4.0043 -1.4815 -0.0957 7 6 3.5715 -0.7871 1.1982 8 6 2.0419 -0.7252 1.2484 9 1 1.7278 -0.1838 2.1407 10 6 1.4817 -2.1238 1.2840 11 8 1.7219 -2.8966 0.3806 12 7 0.7139 -2.5160 2.3199 13 6 0.1698 -3.8758 2.3549 14 6 -0.6598 -4.0605 3.6271 15 6 -1.2201 -5.4591 3.6629 16 1 -1.0061 -6.1471 2.8584 17 6 -2.0107 -5.8582 4.7195 18 7 -2.2716 -5.0202 5.6989 19 14 -2.7114 -7.5894 4.7600 20 1 -1.5995 -8.5737 4.7520 21 1 -3.5215 -7.7669 5.9919 22 1 -3.5707 -7.8035 3.5679 23 1 -0.3634 0.4218 0.9371 24 1 -0.3634 0.6006 -0.8339 25 1 -0.3634 -1.0225 -0.1033 26 1 1.7159 -0.1885 -2.1389 27 1 1.6432 -1.7393 -1.2677 28 1 5.0925 -1.4903 -0.1570 29 1 3.6318 -2.5058 -0.1005 30 1 3.9779 0.2241 1.2224 31 1 3.9416 -1.3490 2.0557 32 1 0.5215 -1.8978 3.0423 33 1 0.9886 -4.5950 2.3470 34 1 -0.4634 -4.0363 1.4823 35 1 -1.4787 -3.3412 3.6347 36 1 -0.0271 -3.8998 4.5001 37 1 -2.8281 -5.3009 6.4421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308816758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:36 Heat of formation + Delta-G solvation = -108.063611 kcal Electronic energy + Delta-G solvation = -17878.834133 eV Core-core repulsion = 15041.208223 eV Total energy + Delta-G solvation = -2837.625910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63462 -37.91120 -34.89926 -34.40927 -32.85809 -32.16153 -29.72476 -27.02547 -25.77549 -24.35537 -22.37371 -21.68786 -20.79998 -19.37269 -16.84352 -16.26518 -16.12358 -15.93651 -15.38715 -14.93458 -14.50658 -14.47887 -13.98262 -13.80407 -12.88703 -12.69047 -12.62040 -12.30243 -12.27005 -12.01465 -11.68174 -11.25040 -11.10303 -10.98446 -10.70177 -10.66809 -10.53484 -10.33510 -9.79514 -9.54637 -9.34880 -8.80240 -8.56546 -8.38203 -6.12220 -4.15431 2.91803 3.29048 3.33046 3.35757 3.63528 4.00947 4.39135 4.54801 4.69644 4.74013 4.92728 5.23528 5.24803 5.28950 5.40289 5.49738 5.60709 5.63025 5.73970 5.81141 5.88091 6.02470 6.07693 6.13276 6.23476 6.30208 6.32269 6.69831 6.90132 7.31609 7.47556 7.57489 7.85449 7.97198 8.24282 8.61017 8.90313 9.49658 10.99293 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045112 B = 0.004622 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.531639 B = 6056.171774 C = 6165.358897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 H 0.083 0.917 4 C 0.054 3.946 5 O -0.385 6.385 6 C 0.049 3.951 7 C -0.139 4.139 8 C -0.108 4.108 9 H 0.088 0.912 10 C 0.511 3.489 11 O -0.546 6.546 12 N -0.719 5.719 13 C 0.121 3.879 14 C 0.013 3.987 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.397 0.603 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 11.435 -8.212 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.128 4.128 3 H 0.102 0.898 4 C -0.022 4.022 5 O -0.303 6.303 6 C -0.028 4.028 7 C -0.177 4.177 8 C -0.129 4.129 9 H 0.106 0.894 10 C 0.297 3.703 11 O -0.426 6.426 12 N -0.368 5.368 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.231 0.769 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.481 10.950 -8.809 16.414 hybrid contribution -0.778 -0.651 0.915 1.366 sum 7.703 10.299 -7.894 15.091 Atomic orbital electron populations 1.21826 0.94109 1.02717 1.02233 1.21626 0.96528 0.99802 0.94845 0.89840 1.22858 0.81245 1.01799 0.96337 1.87824 1.20437 1.76388 1.45684 1.22784 0.98119 0.97209 0.84660 1.22044 0.93451 1.02403 0.99811 1.21427 0.96903 0.94423 1.00191 0.89352 1.20455 0.78657 0.88960 0.82231 1.90569 1.59722 1.55403 1.36900 1.46455 1.50677 1.16491 1.23190 1.21720 0.97133 0.80051 1.01213 1.19314 0.94545 0.97811 0.90782 1.21008 1.31070 0.97442 1.06652 0.92338 1.24989 0.96121 0.97667 0.95425 1.69944 1.38027 1.35323 1.10018 0.86573 0.79153 0.84405 0.77416 1.20091 1.21205 1.20100 0.92060 0.92146 0.92061 0.89694 0.90132 0.89647 0.90128 0.90466 0.90641 0.76942 0.92606 0.92613 0.95983 0.96000 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.79 37.16 0.33 -1.36 16 2 C -0.11 -1.26 2.70 -90.48 -0.24 -1.50 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.05 0.71 5.84 37.21 0.22 0.93 16 5 O -0.38 -5.50 10.77 -35.23 -0.38 -5.87 16 6 C 0.05 0.64 6.55 37.20 0.24 0.88 16 7 C -0.14 -1.59 5.62 -26.60 -0.15 -1.74 16 8 C -0.11 -1.32 2.69 -91.59 -0.25 -1.56 16 9 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 10 C 0.51 8.14 5.29 -10.99 -0.06 8.08 16 11 O -0.55 -10.30 11.65 5.56 0.06 -10.24 16 12 N -0.72 -12.06 5.56 -60.29 -0.33 -12.40 16 13 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 19 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.82 7.36 -51.93 -0.38 0.44 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.26 5.71 -51.93 -0.30 0.96 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.25 5.69 -51.93 -0.30 0.96 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.40 5.83 8.31 -40.82 -0.34 5.49 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -30.42 295.48 -6.88 -37.31 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.92 Total: 2.48 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.49 Total: -6.73 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.40 Total: -37.60 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.31 Total: -16.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.42 -6.88 -37.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.757 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds