Wall clock time and date at job start Mon Mar 30 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.57205 * 2 1 4 4 C 1.53093 * 109.52416 * 239.84185 * 2 1 3 5 5 O 1.42898 * 109.41502 * 182.48342 * 4 2 1 6 6 C 1.42904 * 114.09586 * 61.15896 * 5 4 2 7 7 C 1.53087 * 109.41639 * 298.84028 * 6 5 4 8 8 C 1.53173 * 109.16492 * 57.60941 * 7 6 5 9 9 H 1.08999 * 109.55044 * 183.06412 * 8 7 6 10 10 C 1.50703 * 109.54215 * 62.88329 * 8 7 6 11 11 O 1.21279 * 120.00480 * 300.57628 * 10 8 7 12 12 N 1.34774 * 119.99853 * 120.57475 * 10 8 7 13 13 C 1.46506 * 120.00157 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47071 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47114 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99771 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00205 * 180.27194 * 15 14 13 18 18 N 1.31516 * 119.99903 * 359.72603 * 17 15 14 19 19 Si 1.86803 * 120.00136 * 179.72701 * 17 15 14 20 20 H 1.48496 * 109.46969 * 60.00027 * 19 17 15 21 21 H 1.48503 * 109.47170 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46724 * 299.99913 * 19 17 15 23 23 H 1.09002 * 109.47618 * 294.23221 * 1 2 3 24 24 H 1.09004 * 109.47655 * 54.23813 * 1 2 3 25 25 H 1.09004 * 109.47162 * 174.22889 * 1 2 3 26 26 H 1.09003 * 109.48019 * 62.49992 * 4 2 1 27 27 H 1.09000 * 109.48209 * 302.46823 * 4 2 1 28 28 H 1.09004 * 109.48121 * 178.85965 * 6 5 4 29 29 H 1.08996 * 109.49349 * 58.83242 * 6 5 4 30 30 H 1.09001 * 109.52420 * 297.70160 * 7 6 5 31 31 H 1.08996 * 109.57535 * 177.54645 * 7 6 5 32 32 H 0.97005 * 119.99870 * 0.02562 * 12 10 8 33 33 H 1.08991 * 109.46967 * 60.00012 * 13 12 10 34 34 H 1.09003 * 109.46688 * 299.99572 * 13 12 10 35 35 H 1.08995 * 109.47685 * 59.99719 * 14 13 12 36 36 H 1.09003 * 109.47367 * 299.99886 * 14 13 12 37 37 H 0.97003 * 120.00182 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7742 -1.2163 6 6 4.0043 -1.4815 -0.0957 7 6 3.5715 -0.7871 1.1982 8 6 2.0419 -0.7252 1.2484 9 1 1.7278 -0.1838 2.1407 10 6 1.4817 -2.1238 1.2840 11 8 1.7219 -2.8966 0.3806 12 7 0.7139 -2.5160 2.3199 13 6 0.1698 -3.8758 2.3549 14 6 -0.6598 -4.0605 3.6271 15 6 -1.2201 -5.4591 3.6629 16 1 -1.0061 -6.1471 2.8584 17 6 -2.0107 -5.8582 4.7195 18 7 -2.2716 -5.0202 5.6989 19 14 -2.7114 -7.5894 4.7600 20 1 -1.5995 -8.5737 4.7520 21 1 -3.5215 -7.7669 5.9919 22 1 -3.5707 -7.8035 3.5679 23 1 -0.3634 0.4218 0.9371 24 1 -0.3634 0.6006 -0.8339 25 1 -0.3634 -1.0225 -0.1033 26 1 1.7159 -0.1885 -2.1389 27 1 1.6432 -1.7393 -1.2677 28 1 5.0925 -1.4903 -0.1570 29 1 3.6318 -2.5058 -0.1005 30 1 3.9779 0.2241 1.2224 31 1 3.9416 -1.3490 2.0557 32 1 0.5215 -1.8978 3.0423 33 1 0.9886 -4.5950 2.3470 34 1 -0.4634 -4.0363 1.4823 35 1 -1.4787 -3.3412 3.6347 36 1 -0.0271 -3.8998 4.5001 37 1 -2.8281 -5.3009 6.4421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308816758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:36 Heat of formation + Delta-G solvation = -128.923006 kcal Electronic energy + Delta-G solvation = -17879.738664 eV Core-core repulsion = 15041.208223 eV Total energy + Delta-G solvation = -2838.530441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79190 -39.13670 -36.55400 -35.45876 -34.78641 -33.13681 -31.54875 -28.08621 -27.19209 -25.89516 -23.44055 -23.11514 -22.30901 -20.62890 -18.60338 -17.72113 -17.28016 -17.06557 -16.59936 -16.48071 -16.29082 -15.48132 -15.46015 -15.05436 -14.35164 -14.09722 -13.89666 -13.58063 -13.28784 -13.22686 -12.94571 -12.89872 -12.66483 -12.55064 -12.23619 -11.96244 -11.76954 -11.60082 -11.56348 -11.42377 -10.66133 -10.61106 -10.01136 -9.96923 -8.25431 -6.36137 1.40849 1.42768 1.50885 1.65264 2.26458 2.45324 3.01643 3.09328 3.57883 3.70779 3.75259 3.97522 4.17836 4.37200 4.46647 4.48905 4.51970 4.57602 4.68569 4.72260 4.82916 4.83904 4.86824 4.94282 5.08433 5.10765 5.17864 5.27214 5.37648 5.51879 5.56700 5.77725 6.15004 6.28870 6.65114 6.76957 7.31469 7.33413 8.86091 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045112 B = 0.004622 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.531639 B = 6056.171774 C = 6165.358897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.111 0.889 4 C 0.051 3.949 5 O -0.395 6.395 6 C 0.044 3.956 7 C -0.135 4.135 8 C -0.104 4.104 9 H 0.117 0.883 10 C 0.510 3.490 11 O -0.577 6.577 12 N -0.717 5.717 13 C 0.142 3.858 14 C 0.024 3.976 15 C -0.549 4.549 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.269 1.269 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.103 0.897 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.409 0.591 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.720 12.657 -8.167 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 H 0.129 0.871 4 C -0.026 4.026 5 O -0.314 6.314 6 C -0.032 4.032 7 C -0.173 4.173 8 C -0.125 4.125 9 H 0.135 0.865 10 C 0.298 3.702 11 O -0.458 6.458 12 N -0.367 5.367 13 C 0.019 3.981 14 C -0.014 4.014 15 C -0.587 4.587 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.194 1.194 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.898 12.194 -8.766 17.456 hybrid contribution -0.877 -1.019 0.852 1.591 sum 8.021 11.175 -7.915 15.870 Atomic orbital electron populations 1.21816 0.93927 1.01204 1.03689 1.21645 0.96597 1.00637 0.93330 0.87098 1.22896 0.80871 1.00550 0.98267 1.87807 1.20893 1.76301 1.46423 1.22839 0.99176 0.95708 0.85506 1.22070 0.92625 1.03796 0.98807 1.21535 0.97422 0.91619 1.01939 0.86515 1.21220 0.77625 0.90394 0.80980 1.90581 1.60493 1.56812 1.37903 1.46291 1.51055 1.15082 1.24285 1.21161 0.95987 0.82261 0.98733 1.19118 0.94130 0.96301 0.91839 1.21438 1.31585 0.98858 1.06862 0.92487 1.25844 0.96352 1.01807 0.94965 1.70046 1.38635 1.37258 1.10590 0.85528 0.78569 0.79415 0.77723 1.19376 1.20484 1.19400 0.90864 0.90375 0.95111 0.87942 0.93370 0.87692 0.93344 0.87700 0.90130 0.75548 0.93823 0.93883 0.97360 0.97369 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.79 71.98 0.63 -2.40 16 2 C -0.10 -2.12 2.70 -10.70 -0.03 -2.15 16 3 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.05 1.28 5.84 72.01 0.42 1.70 16 5 O -0.40 -10.77 10.77 -148.98 -1.60 -12.37 16 6 C 0.04 1.10 6.55 72.01 0.47 1.58 16 7 C -0.14 -2.72 5.62 30.68 0.17 -2.55 16 8 C -0.10 -2.29 2.69 -11.42 -0.03 -2.32 16 9 H 0.12 1.96 7.92 -2.39 -0.02 1.94 16 10 C 0.51 16.03 5.29 87.66 0.46 16.50 16 11 O -0.58 -22.30 11.65 -3.03 -0.04 -22.34 16 12 N -0.72 -23.96 5.56 -463.06 -2.57 -26.53 16 13 C 0.14 6.05 5.61 86.38 0.48 6.54 16 14 C 0.02 1.18 5.09 29.85 0.15 1.33 16 15 C -0.55 -30.61 9.11 25.60 0.23 -30.37 16 16 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 17 C 0.01 0.52 5.46 84.65 0.46 0.98 16 18 N -0.93 -53.97 13.29 21.45 0.28 -53.69 16 19 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.03 0.81 7.36 -2.38 -0.02 0.79 16 26 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.55 5.71 -2.39 -0.01 1.53 16 28 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.05 1.53 5.69 -2.39 -0.01 1.52 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.41 11.67 8.31 -92.70 -0.77 10.89 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -66.12 295.48 1.81 -64.30 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.28 Total: 16.35 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.43 Total: -11.17 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.29 Total: -80.22 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.64 Total: -34.71 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.12 1.81 -64.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.620 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds