Wall clock time and date at job start Mon Mar 30 2020 04:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46706 * 2 1 4 4 C 1.52997 * 109.46873 * 240.00054 * 2 1 3 5 5 C 1.53007 * 117.49834 * 65.44267 * 4 2 1 6 6 C 1.53000 * 117.49929 * 356.81963 * 4 2 1 7 7 N 1.46899 * 109.46986 * 119.99787 * 2 1 3 8 8 C 1.46892 * 111.00306 * 290.18971 * 7 2 1 9 9 C 1.50706 * 109.47064 * 293.95782 * 8 7 2 10 10 H 1.08001 * 120.00080 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00073 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00116 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00306 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47116 * 89.99512 * 13 11 9 15 15 H 1.48500 * 109.47458 * 209.99664 * 13 11 9 16 16 H 1.48501 * 109.47035 * 329.99697 * 13 11 9 17 17 C 1.46903 * 111.00044 * 54.14653 * 7 2 1 18 18 C 1.52994 * 109.47196 * 164.08026 * 17 7 2 19 19 C 1.50700 * 109.47451 * 181.02118 * 18 17 7 20 20 O 1.20826 * 119.99568 * 0.02562 * 19 18 17 21 21 O 1.34227 * 120.00342 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47120 * 299.99739 * 1 2 3 24 24 H 1.08996 * 109.47037 * 59.99890 * 1 2 3 25 25 H 1.08998 * 115.55713 * 211.13005 * 4 2 1 26 26 H 1.08997 * 117.49476 * 145.01855 * 5 4 2 27 27 H 1.08994 * 117.49711 * 359.97438 * 5 4 2 28 28 H 1.09001 * 117.50144 * 0.02562 * 6 4 2 29 29 H 1.09005 * 117.49677 * 214.97466 * 6 4 2 30 30 H 1.08997 * 109.47095 * 53.95631 * 8 7 2 31 31 H 1.08996 * 109.47009 * 173.95735 * 8 7 2 32 32 H 0.96995 * 119.99944 * 180.02562 * 12 11 9 33 33 H 1.08993 * 109.46838 * 284.08245 * 17 7 2 34 34 H 1.09004 * 109.46839 * 44.07917 * 17 7 2 35 35 H 1.09003 * 109.47288 * 301.02749 * 18 17 7 36 36 H 1.08999 * 109.47153 * 61.01802 * 18 17 7 37 37 H 0.96696 * 116.99619 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.7436 -0.0792 -2.6061 6 6 0.9979 -1.3453 -2.1796 7 7 2.0197 -0.6925 1.1995 8 6 1.7490 0.0952 2.4095 9 6 2.5585 1.3658 2.3734 10 1 3.2094 1.5678 1.5355 11 6 2.4691 2.2699 3.4104 12 7 1.6768 2.0238 4.4310 13 14 3.4731 3.8445 3.3661 14 1 2.6889 4.9129 2.6960 15 1 3.7971 4.2643 4.7532 16 1 4.7314 3.6082 2.6137 17 6 1.4378 -2.0372 1.3055 18 6 2.2443 -2.8642 2.3086 19 6 1.6627 -4.2515 2.3987 20 8 0.7019 -4.5484 1.7288 21 8 2.2125 -5.1577 3.2223 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 2.9903 -1.2429 -1.1361 26 1 2.4990 -0.1786 -3.3855 27 1 1.1851 0.8567 -2.6087 28 1 -0.0511 -1.2417 -1.9019 29 1 1.2627 -2.2775 -2.6785 30 1 0.6881 0.3414 2.4529 31 1 2.0234 -0.4857 3.2900 32 1 1.6137 2.6600 5.1604 33 1 0.4050 -1.9603 1.6450 34 1 1.4644 -2.5225 0.3298 35 1 3.2813 -2.9257 1.9784 36 1 2.2027 -2.3885 3.2884 37 1 1.8047 -6.0341 3.2455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308824028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:34 Heat of formation + Delta-G solvation = -69.250889 kcal Electronic energy + Delta-G solvation = -17942.204429 eV Core-core repulsion = 15106.261565 eV Total energy + Delta-G solvation = -2835.942864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07367 -38.65553 -36.10611 -35.56180 -32.66411 -31.33964 -28.72941 -26.72131 -24.65664 -23.48831 -22.08335 -21.32910 -20.14620 -18.40202 -17.76313 -16.57526 -16.25916 -15.80634 -15.53669 -14.96690 -14.21881 -14.13920 -13.54718 -13.44848 -12.66088 -12.46538 -12.29396 -11.67355 -11.44371 -11.40587 -11.37853 -11.28287 -10.99383 -10.84628 -10.70084 -10.40756 -10.33360 -10.24778 -10.08878 -9.58579 -9.46498 -9.13306 -8.43911 -7.25423 -6.04081 -4.04960 2.41497 3.23167 3.31107 3.37879 3.41996 4.16092 4.42188 4.83131 5.17280 5.26179 5.30258 5.32043 5.41499 5.49481 5.72278 5.78968 5.86266 5.96047 5.98884 6.04886 6.12780 6.30372 6.36911 6.39689 6.42533 6.53483 6.65276 6.75531 6.87158 7.26823 7.40193 7.79149 8.04436 8.09070 8.19428 8.52705 9.02880 9.59328 11.06627 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.008222 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.563034 B = 3404.607346 C = 4745.629968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.120 3.880 3 H 0.098 0.902 4 C -0.132 4.132 5 C -0.182 4.182 6 C -0.193 4.193 7 N -0.529 5.529 8 C 0.187 3.813 9 C -0.506 4.506 10 H 0.064 0.936 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.067 3.933 18 C -0.111 4.111 19 C 0.482 3.518 20 O -0.523 6.523 21 O -0.520 6.520 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.084 0.916 30 H -0.003 1.003 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -8.968 -7.308 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.012 3.988 3 H 0.116 0.884 4 C -0.151 4.151 5 C -0.220 4.220 6 C -0.230 4.230 7 N -0.253 5.253 8 C 0.062 3.938 9 C -0.545 4.545 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.723 3.277 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.061 4.061 18 C -0.149 4.149 19 C 0.325 3.675 20 O -0.412 6.412 21 O -0.331 6.331 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.124 0.876 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.015 0.985 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.358 -8.620 -7.356 11.338 hybrid contribution -0.688 0.347 0.245 0.809 sum -0.330 -8.273 -7.111 10.915 Atomic orbital electron populations 1.22542 0.98604 1.01267 1.01854 1.21064 0.91512 0.98518 0.87729 0.88418 1.22455 0.99643 1.02439 0.90560 1.22898 1.03548 0.97058 0.98496 1.23136 0.98535 0.96547 1.04809 1.62202 1.57470 1.01137 1.04464 1.19835 0.95384 0.92444 0.86128 1.21158 1.25016 1.02836 1.05494 0.91800 1.24974 0.95674 0.98458 0.95441 1.69953 1.38233 1.36432 1.09165 0.86536 0.80575 0.83381 0.77165 1.20804 1.21324 1.19759 1.21751 0.95376 0.91200 0.97809 1.21418 1.02271 0.86919 1.04257 1.23864 0.80827 0.87824 0.75027 1.90686 1.27148 1.80345 1.43024 1.84593 1.60228 1.26126 1.62157 0.92834 0.91790 0.93184 0.87555 0.89428 0.89085 0.88501 0.89736 0.98488 0.95063 0.92952 0.94724 0.90881 0.87120 0.87051 0.73885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 7.07 37.16 0.26 -2.97 16 2 C 0.12 2.24 2.54 -67.71 -0.17 2.07 16 3 H 0.10 2.04 6.65 -51.93 -0.35 1.69 16 4 C -0.13 -2.07 4.64 -90.62 -0.42 -2.49 16 5 C -0.18 -2.45 9.96 -26.72 -0.27 -2.72 16 6 C -0.19 -2.64 9.34 -26.73 -0.25 -2.89 16 7 N -0.53 -10.71 4.40 -228.09 -1.00 -11.71 16 8 C 0.19 4.59 4.45 -4.98 -0.02 4.57 16 9 C -0.51 -13.62 8.37 -34.44 -0.29 -13.91 16 10 H 0.06 1.71 7.18 -52.49 -0.38 1.33 16 11 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 13 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.07 1.20 3.00 -3.83 -0.01 1.19 16 18 C -0.11 -1.77 5.85 -27.89 -0.16 -1.93 16 19 C 0.48 7.21 8.33 36.01 0.30 7.51 16 20 O -0.52 -9.13 16.74 -18.75 -0.31 -9.45 16 21 O -0.52 -6.23 13.42 -39.25 -0.53 -6.75 16 22 H 0.05 0.90 5.80 -51.93 -0.30 0.60 16 23 H 0.06 1.27 6.57 -51.93 -0.34 0.93 16 24 H 0.05 0.78 7.19 -51.93 -0.37 0.40 16 25 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.21 7.96 -51.93 -0.41 0.80 16 28 H 0.10 1.34 5.82 -51.93 -0.30 1.04 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.00 -0.07 6.39 -51.93 -0.33 -0.40 16 31 H 0.03 0.81 6.42 -51.93 -0.33 0.48 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 34 H 0.07 1.25 6.69 -51.93 -0.35 0.91 16 35 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.11 1.89 6.64 -51.93 -0.34 1.55 16 37 H 0.40 2.93 9.10 45.56 0.41 3.34 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -30.26 298.12 -7.36 -37.62 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.59 Total: 4.99 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.13 Total: -10.12 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.27 Total: -36.97 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.84 Total: -16.20 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.26 -7.36 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308824028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.634 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds