Wall clock time and date at job start Mon Mar 30 2020 04:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46706 * 2 1 4 4 C 1.52997 * 109.46873 * 240.00054 * 2 1 3 5 5 C 1.53007 * 117.49834 * 65.44267 * 4 2 1 6 6 C 1.53000 * 117.49929 * 356.81963 * 4 2 1 7 7 N 1.46899 * 109.46986 * 119.99787 * 2 1 3 8 8 C 1.46892 * 111.00306 * 290.18971 * 7 2 1 9 9 C 1.50706 * 109.47064 * 293.95782 * 8 7 2 10 10 H 1.08001 * 120.00080 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00073 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00116 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00306 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47116 * 89.99512 * 13 11 9 15 15 H 1.48500 * 109.47458 * 209.99664 * 13 11 9 16 16 H 1.48501 * 109.47035 * 329.99697 * 13 11 9 17 17 C 1.46903 * 111.00044 * 54.14653 * 7 2 1 18 18 C 1.52994 * 109.47196 * 164.08026 * 17 7 2 19 19 C 1.50700 * 109.47451 * 181.02118 * 18 17 7 20 20 O 1.20826 * 119.99568 * 0.02562 * 19 18 17 21 21 O 1.34227 * 120.00342 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47120 * 299.99739 * 1 2 3 24 24 H 1.08996 * 109.47037 * 59.99890 * 1 2 3 25 25 H 1.08998 * 115.55713 * 211.13005 * 4 2 1 26 26 H 1.08997 * 117.49476 * 145.01855 * 5 4 2 27 27 H 1.08994 * 117.49711 * 359.97438 * 5 4 2 28 28 H 1.09001 * 117.50144 * 0.02562 * 6 4 2 29 29 H 1.09005 * 117.49677 * 214.97466 * 6 4 2 30 30 H 1.08997 * 109.47095 * 53.95631 * 8 7 2 31 31 H 1.08996 * 109.47009 * 173.95735 * 8 7 2 32 32 H 0.96995 * 119.99944 * 180.02562 * 12 11 9 33 33 H 1.08993 * 109.46838 * 284.08245 * 17 7 2 34 34 H 1.09004 * 109.46839 * 44.07917 * 17 7 2 35 35 H 1.09003 * 109.47288 * 301.02749 * 18 17 7 36 36 H 1.08999 * 109.47153 * 61.01802 * 18 17 7 37 37 H 0.96696 * 116.99619 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.7436 -0.0792 -2.6061 6 6 0.9979 -1.3453 -2.1796 7 7 2.0197 -0.6925 1.1995 8 6 1.7490 0.0952 2.4095 9 6 2.5585 1.3658 2.3734 10 1 3.2094 1.5678 1.5355 11 6 2.4691 2.2699 3.4104 12 7 1.6768 2.0238 4.4310 13 14 3.4731 3.8445 3.3661 14 1 2.6889 4.9129 2.6960 15 1 3.7971 4.2643 4.7532 16 1 4.7314 3.6082 2.6137 17 6 1.4378 -2.0372 1.3055 18 6 2.2443 -2.8642 2.3086 19 6 1.6627 -4.2515 2.3987 20 8 0.7019 -4.5484 1.7288 21 8 2.2125 -5.1577 3.2223 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 2.9903 -1.2429 -1.1361 26 1 2.4990 -0.1786 -3.3855 27 1 1.1851 0.8567 -2.6087 28 1 -0.0511 -1.2417 -1.9019 29 1 1.2627 -2.2775 -2.6785 30 1 0.6881 0.3414 2.4529 31 1 2.0234 -0.4857 3.2900 32 1 1.6137 2.6600 5.1604 33 1 0.4050 -1.9603 1.6450 34 1 1.4644 -2.5225 0.3298 35 1 3.2813 -2.9257 1.9784 36 1 2.2027 -2.3885 3.2884 37 1 1.8047 -6.0341 3.2455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308824028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:34 Heat of formation + Delta-G solvation = -89.477310 kcal Electronic energy + Delta-G solvation = -17943.081513 eV Core-core repulsion = 15106.261565 eV Total energy + Delta-G solvation = -2836.819948 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29428 -40.05604 -37.29403 -36.91252 -34.69401 -32.75718 -30.41717 -28.49296 -26.05720 -25.25233 -23.19615 -22.77238 -21.50810 -19.84971 -18.97482 -18.35331 -17.74007 -17.17306 -16.78375 -16.69425 -15.85225 -15.55560 -14.99321 -14.87843 -14.21492 -13.99242 -13.83109 -13.40052 -12.94782 -12.84051 -12.73666 -12.68379 -12.53218 -12.50849 -12.17790 -12.09489 -11.74122 -11.63888 -11.55137 -11.24717 -10.99669 -10.66822 -10.51254 -8.96048 -8.16087 -6.24122 1.20974 1.43322 1.44038 1.55433 2.10195 2.43804 3.00798 3.16768 3.37701 3.90886 3.96624 4.08395 4.15117 4.23762 4.41647 4.45824 4.52264 4.56385 4.69619 4.83897 4.85830 4.98222 4.99843 5.02552 5.09302 5.22137 5.35077 5.37812 5.44796 5.52065 5.61407 5.71093 6.11303 6.41632 6.66122 6.92298 7.02972 7.44847 8.94686 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.008222 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.563034 B = 3404.607346 C = 4745.629968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.119 3.881 3 H 0.069 0.931 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.181 4.181 7 N -0.529 5.529 8 C 0.203 3.797 9 C -0.516 4.516 10 H 0.062 0.938 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.962 3.038 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.264 1.264 17 C 0.074 3.926 18 C -0.109 4.109 19 C 0.495 3.505 20 O -0.549 6.549 21 O -0.510 6.510 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.102 0.898 30 H -0.032 1.032 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.016 0.984 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -9.546 -8.802 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 H 0.087 0.913 4 C -0.169 4.169 5 C -0.206 4.206 6 C -0.218 4.218 7 N -0.252 5.252 8 C 0.077 3.923 9 C -0.555 4.555 10 H 0.080 0.920 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.788 3.212 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.189 1.189 17 C -0.054 4.054 18 C -0.147 4.147 19 C 0.339 3.661 20 O -0.440 6.440 21 O -0.324 6.324 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.120 0.880 30 H -0.015 1.015 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.105 0.895 35 H 0.144 0.856 36 H 0.115 0.885 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.226 -9.231 -8.857 12.852 hybrid contribution -0.966 0.452 0.711 1.282 sum 0.260 -8.779 -8.146 11.979 Atomic orbital electron populations 1.22429 0.98002 1.01494 1.01244 1.21032 0.91994 0.97452 0.88493 0.91278 1.22238 1.00413 1.04172 0.90084 1.23000 1.03552 0.97022 0.97016 1.23187 0.97819 0.97500 1.03257 1.62151 1.57895 1.01775 1.03424 1.19475 0.93145 0.92166 0.87553 1.21455 1.24917 1.03793 1.05314 0.91964 1.25820 0.96751 1.01807 0.95072 1.70079 1.39768 1.37697 1.09902 0.85485 0.79222 0.79285 0.77254 1.20196 1.20996 1.18874 1.21704 0.94544 0.90142 0.99020 1.21296 1.02899 0.87616 1.02914 1.23416 0.80121 0.87717 0.74867 1.90683 1.28204 1.80844 1.44318 1.84523 1.59841 1.27253 1.60770 0.92117 0.95057 0.91008 0.87666 0.87382 0.89038 0.88679 0.87970 1.01454 0.96862 0.92886 0.96555 0.89529 0.85611 0.88472 0.71113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.13 7.07 71.98 0.51 -5.62 16 2 C 0.12 4.44 2.54 44.92 0.11 4.56 16 3 H 0.07 2.96 6.65 -2.38 -0.02 2.94 16 4 C -0.15 -4.47 4.64 -10.79 -0.05 -4.52 16 5 C -0.17 -4.07 9.96 30.60 0.30 -3.77 16 6 C -0.18 -4.44 9.34 30.60 0.29 -4.15 16 7 N -0.53 -21.83 4.40 -875.54 -3.86 -25.69 16 8 C 0.20 10.37 4.45 85.56 0.38 10.75 16 9 C -0.52 -28.43 8.37 25.60 0.21 -28.22 16 10 H 0.06 3.38 7.18 -2.91 -0.02 3.36 16 11 C 0.00 0.19 5.46 84.65 0.46 0.65 16 12 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 13 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 C 0.07 2.67 3.00 86.30 0.26 2.93 16 18 C -0.11 -3.46 5.85 29.85 0.17 -3.28 16 19 C 0.49 14.22 8.33 71.24 0.59 14.81 16 20 O -0.55 -18.56 16.74 21.96 0.37 -18.19 16 21 O -0.51 -11.13 13.42 -51.38 -0.69 -11.82 16 22 H 0.06 2.04 5.80 -2.39 -0.01 2.02 16 23 H 0.03 1.29 6.57 -2.39 -0.02 1.27 16 24 H 0.07 2.18 7.19 -2.39 -0.02 2.16 16 25 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 26 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.22 7.96 -2.39 -0.02 2.20 16 28 H 0.09 2.39 5.82 -2.39 -0.01 2.37 16 29 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 30 H -0.03 -1.81 6.39 -2.39 -0.02 -1.83 16 31 H 0.01 0.72 6.42 -2.39 -0.02 0.71 16 32 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 33 H 0.02 0.64 7.11 -2.39 -0.02 0.63 16 34 H 0.09 2.88 6.69 -2.38 -0.02 2.87 16 35 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.10 3.38 6.64 -2.39 -0.02 3.37 16 37 H 0.43 5.06 9.10 -74.06 -0.67 4.39 16 Total: -1.00 -65.56 298.12 1.78 -63.78 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.40 Total: 17.01 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 3.25 Total: -15.87 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -3.57 Total: -80.75 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.32 Total: -30.01 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.56 1.78 -63.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308824028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.699 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds