Wall clock time and date at job start Mon Mar 30 2020 04:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47254 * 2 1 4 4 C 1.53000 * 109.47364 * 119.99820 * 2 1 3 5 5 C 1.53003 * 117.49705 * 2.76786 * 4 2 1 6 6 C 1.53004 * 117.49841 * 294.14289 * 4 2 1 7 7 N 1.46903 * 109.47383 * 240.00227 * 2 1 3 8 8 C 1.46896 * 111.00163 * 75.94309 * 7 2 1 9 9 C 1.50710 * 109.46754 * 72.22355 * 8 7 2 10 10 H 1.07997 * 120.00129 * 5.01963 * 9 8 7 11 11 C 1.37878 * 119.99889 * 185.02953 * 9 8 7 12 12 N 1.31513 * 119.99856 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99867 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47015 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46755 * 119.99803 * 13 11 9 16 16 H 1.48496 * 109.47012 * 239.99369 * 13 11 9 17 17 C 1.46907 * 110.99534 * 311.99264 * 7 2 1 18 18 C 1.52992 * 109.47240 * 282.27438 * 17 7 2 19 19 C 1.50693 * 109.47209 * 185.93158 * 18 17 7 20 20 O 1.20828 * 120.00149 * 359.97438 * 19 18 17 21 21 O 1.34229 * 120.00195 * 180.02562 * 19 18 17 22 22 H 1.09004 * 109.47050 * 305.72904 * 1 2 3 23 23 H 1.09002 * 109.47347 * 65.72752 * 1 2 3 24 24 H 1.09001 * 109.47115 * 185.73100 * 1 2 3 25 25 H 1.09003 * 115.56310 * 148.45205 * 4 2 1 26 26 H 1.08996 * 117.49857 * 359.97438 * 5 4 2 27 27 H 1.09001 * 117.49802 * 145.02358 * 5 4 2 28 28 H 1.08997 * 117.49581 * 214.97623 * 6 4 2 29 29 H 1.08996 * 117.49642 * 359.97438 * 6 4 2 30 30 H 1.08992 * 109.47311 * 192.21954 * 8 7 2 31 31 H 1.08996 * 109.47638 * 312.22439 * 8 7 2 32 32 H 0.97000 * 120.00064 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.46925 * 42.27649 * 17 7 2 34 34 H 1.08995 * 109.46449 * 162.27343 * 17 7 2 35 35 H 1.09004 * 109.47381 * 305.93571 * 18 17 7 36 36 H 1.09006 * 109.47321 * 65.93135 * 18 17 7 37 37 H 0.96701 * 117.00244 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 0.9975 -1.3369 2.1846 6 6 1.7522 -0.0742 2.6055 7 7 2.0197 -0.6924 -1.1995 8 6 1.8812 0.1560 -2.3906 9 6 2.9007 1.2647 -2.3389 10 1 3.6354 1.2862 -1.5477 11 6 2.8952 2.2518 -3.3015 12 7 2.0006 2.2254 -4.2652 13 14 4.1584 3.6264 -3.2370 14 1 5.0457 3.4285 -2.0628 15 1 4.9706 3.6110 -4.4801 16 1 3.4626 4.9327 -3.1165 17 6 1.3300 -1.9763 -1.3845 18 6 1.9135 -3.0121 -0.4215 19 6 1.3098 -4.3624 -0.7100 20 8 0.4960 -4.4837 -1.5948 21 8 1.6754 -5.4301 0.0166 22 1 -0.3633 0.6001 0.8343 23 1 -0.3634 0.4224 -0.9368 24 1 -0.3633 -1.0225 0.1026 25 1 2.9869 -1.2488 1.1341 26 1 -0.0517 -1.2278 1.9103 27 1 1.2585 -2.2694 2.6850 28 1 2.5097 -0.1761 3.3826 29 1 1.1998 0.8655 2.6077 30 1 2.0430 -0.4448 -3.2855 31 1 0.8794 0.5846 -2.4170 32 1 1.9965 2.9200 -4.9423 33 1 0.2666 -1.8500 -1.1816 34 1 1.4662 -2.3171 -2.4108 35 1 2.9945 -3.0618 -0.5526 36 1 1.6849 -2.7237 0.6045 37 1 1.2613 -6.2752 -0.2058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308824029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:37 Heat of formation + Delta-G solvation = -60.752610 kcal Electronic energy + Delta-G solvation = -18103.586217 eV Core-core repulsion = 15268.011866 eV Total energy + Delta-G solvation = -2835.574351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18329 -38.84500 -36.10613 -35.48707 -32.73258 -31.26573 -29.07884 -26.46010 -25.00357 -23.38607 -22.28536 -21.20494 -20.18703 -18.58939 -17.77269 -16.38252 -16.28198 -16.08014 -15.65358 -14.98519 -14.38706 -14.22023 -13.54967 -13.19434 -12.79779 -12.53973 -12.35467 -11.85802 -11.48601 -11.44921 -11.34872 -11.06914 -11.04606 -10.81905 -10.69050 -10.51858 -10.41367 -10.21733 -10.02471 -9.69134 -9.37098 -9.21104 -8.42491 -7.26469 -6.01534 -4.02985 2.37543 3.18321 3.31467 3.39262 3.44084 4.06905 4.43351 4.78049 5.10693 5.17703 5.22982 5.33096 5.36003 5.42702 5.64693 5.70135 5.77862 5.86359 5.94127 5.98048 6.05331 6.24695 6.30335 6.31417 6.41495 6.52490 6.61995 6.68124 6.81333 7.27867 7.40454 7.82852 8.01179 8.11158 8.19218 8.53537 9.06112 9.61399 11.08866 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.006935 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.027746 B = 4036.289893 C = 4743.958496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.114 3.886 3 H 0.098 0.902 4 C -0.132 4.132 5 C -0.202 4.202 6 C -0.180 4.180 7 N -0.528 5.528 8 C 0.192 3.808 9 C -0.504 4.504 10 H 0.065 0.935 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.058 3.942 18 C -0.121 4.121 19 C 0.477 3.523 20 O -0.520 6.520 21 O -0.523 6.523 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.002 0.998 32 H 0.260 0.740 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -9.475 11.634 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.005 3.995 3 H 0.116 0.884 4 C -0.151 4.151 5 C -0.238 4.238 6 C -0.217 4.217 7 N -0.251 5.251 8 C 0.067 3.933 9 C -0.543 4.543 10 H 0.083 0.917 11 C -0.147 4.147 12 N -0.538 5.538 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.070 4.070 18 C -0.159 4.159 19 C 0.320 3.680 20 O -0.408 6.408 21 O -0.334 6.334 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.045 0.955 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.174 -9.110 11.363 14.611 hybrid contribution -0.524 0.323 -0.363 0.715 sum -1.699 -8.787 11.000 14.181 Atomic orbital electron populations 1.22549 0.98742 1.01003 1.02092 1.21137 0.91339 0.98687 0.88372 0.88430 1.22610 0.99572 1.02303 0.90572 1.23226 0.98566 0.96985 1.05056 1.22942 1.03326 0.96857 0.98622 1.62158 1.54645 1.03273 1.05052 1.19794 0.96360 0.91268 0.85875 1.21208 1.14670 1.07449 1.10996 0.91692 1.24993 0.96011 0.98157 0.95494 1.69971 1.35086 1.34474 1.14313 0.86470 0.81389 0.81753 0.77989 1.19621 1.21086 1.21181 1.21920 0.96527 0.90262 0.98317 1.21827 1.02845 0.86777 1.04442 1.23961 0.79093 0.86866 0.78066 1.90709 1.32813 1.85966 1.31306 1.84576 1.67585 1.20420 1.60835 0.93020 0.91917 0.92528 0.87100 0.88429 0.89454 0.89289 0.89040 0.95483 0.98037 0.93007 0.93693 0.90849 0.87244 0.86493 0.73886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 6.81 37.15 0.25 -2.83 16 2 C 0.11 2.04 2.54 -67.71 -0.17 1.87 16 3 H 0.10 2.01 7.16 -51.92 -0.37 1.64 16 4 C -0.13 -1.91 3.81 -90.62 -0.35 -2.25 16 5 C -0.20 -2.44 7.85 -26.72 -0.21 -2.65 16 6 C -0.18 -2.24 10.03 -26.72 -0.27 -2.51 16 7 N -0.53 -10.74 4.36 -228.08 -1.00 -11.73 16 8 C 0.19 4.85 4.64 -4.97 -0.02 4.83 16 9 C -0.50 -13.82 8.33 -34.44 -0.29 -14.10 16 10 H 0.06 1.77 7.79 -52.49 -0.41 1.36 16 11 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 13 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.06 1.05 4.10 -3.82 -0.02 1.04 16 18 C -0.12 -1.75 5.00 -27.89 -0.14 -1.89 16 19 C 0.48 6.78 8.33 36.00 0.30 7.08 16 20 O -0.52 -9.05 16.66 -18.75 -0.31 -9.36 16 21 O -0.52 -5.68 13.42 -39.26 -0.53 -6.21 16 22 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 23 H 0.06 1.19 6.65 -51.93 -0.35 0.85 16 24 H 0.06 0.87 5.05 -51.93 -0.26 0.61 16 25 H 0.11 1.62 7.48 -51.93 -0.39 1.23 16 26 H 0.10 1.20 5.80 -51.93 -0.30 0.90 16 27 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 30 H 0.03 0.74 7.66 -51.93 -0.40 0.34 16 31 H 0.00 0.05 6.54 -51.93 -0.34 -0.29 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.05 0.82 5.29 -51.93 -0.27 0.54 16 34 H 0.07 1.45 7.39 -51.93 -0.38 1.07 16 35 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.12 1.54 3.93 -51.93 -0.20 1.34 16 37 H 0.40 2.62 9.10 45.56 0.41 3.04 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -30.95 293.75 -7.18 -38.13 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.48 Total: 4.11 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.01 Total: -9.99 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.26 Total: -37.51 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.84 Total: -15.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.95 -7.18 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308824029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.623 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds