Wall clock time and date at job start Mon Mar 30 2020 04:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47254 * 2 1 4 4 C 1.53000 * 109.47364 * 119.99820 * 2 1 3 5 5 C 1.53003 * 117.49705 * 2.76786 * 4 2 1 6 6 C 1.53004 * 117.49841 * 294.14289 * 4 2 1 7 7 N 1.46903 * 109.47383 * 240.00227 * 2 1 3 8 8 C 1.46896 * 111.00163 * 75.94309 * 7 2 1 9 9 C 1.50710 * 109.46754 * 72.22355 * 8 7 2 10 10 H 1.07997 * 120.00129 * 5.01963 * 9 8 7 11 11 C 1.37878 * 119.99889 * 185.02953 * 9 8 7 12 12 N 1.31513 * 119.99856 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99867 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47015 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46755 * 119.99803 * 13 11 9 16 16 H 1.48496 * 109.47012 * 239.99369 * 13 11 9 17 17 C 1.46907 * 110.99534 * 311.99264 * 7 2 1 18 18 C 1.52992 * 109.47240 * 282.27438 * 17 7 2 19 19 C 1.50693 * 109.47209 * 185.93158 * 18 17 7 20 20 O 1.20828 * 120.00149 * 359.97438 * 19 18 17 21 21 O 1.34229 * 120.00195 * 180.02562 * 19 18 17 22 22 H 1.09004 * 109.47050 * 305.72904 * 1 2 3 23 23 H 1.09002 * 109.47347 * 65.72752 * 1 2 3 24 24 H 1.09001 * 109.47115 * 185.73100 * 1 2 3 25 25 H 1.09003 * 115.56310 * 148.45205 * 4 2 1 26 26 H 1.08996 * 117.49857 * 359.97438 * 5 4 2 27 27 H 1.09001 * 117.49802 * 145.02358 * 5 4 2 28 28 H 1.08997 * 117.49581 * 214.97623 * 6 4 2 29 29 H 1.08996 * 117.49642 * 359.97438 * 6 4 2 30 30 H 1.08992 * 109.47311 * 192.21954 * 8 7 2 31 31 H 1.08996 * 109.47638 * 312.22439 * 8 7 2 32 32 H 0.97000 * 120.00064 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.46925 * 42.27649 * 17 7 2 34 34 H 1.08995 * 109.46449 * 162.27343 * 17 7 2 35 35 H 1.09004 * 109.47381 * 305.93571 * 18 17 7 36 36 H 1.09006 * 109.47321 * 65.93135 * 18 17 7 37 37 H 0.96701 * 117.00244 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 0.9975 -1.3369 2.1846 6 6 1.7522 -0.0742 2.6055 7 7 2.0197 -0.6924 -1.1995 8 6 1.8812 0.1560 -2.3906 9 6 2.9007 1.2647 -2.3389 10 1 3.6354 1.2862 -1.5477 11 6 2.8952 2.2518 -3.3015 12 7 2.0006 2.2254 -4.2652 13 14 4.1584 3.6264 -3.2370 14 1 5.0457 3.4285 -2.0628 15 1 4.9706 3.6110 -4.4801 16 1 3.4626 4.9327 -3.1165 17 6 1.3300 -1.9763 -1.3845 18 6 1.9135 -3.0121 -0.4215 19 6 1.3098 -4.3624 -0.7100 20 8 0.4960 -4.4837 -1.5948 21 8 1.6754 -5.4301 0.0166 22 1 -0.3633 0.6001 0.8343 23 1 -0.3634 0.4224 -0.9368 24 1 -0.3633 -1.0225 0.1026 25 1 2.9869 -1.2488 1.1341 26 1 -0.0517 -1.2278 1.9103 27 1 1.2585 -2.2694 2.6850 28 1 2.5097 -0.1761 3.3826 29 1 1.1998 0.8655 2.6077 30 1 2.0430 -0.4448 -3.2855 31 1 0.8794 0.5846 -2.4170 32 1 1.9965 2.9200 -4.9423 33 1 0.2666 -1.8500 -1.1816 34 1 1.4662 -2.3171 -2.4108 35 1 2.9945 -3.0618 -0.5526 36 1 1.6849 -2.7237 0.6045 37 1 1.2613 -6.2752 -0.2058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308824029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:36 Heat of formation + Delta-G solvation = -82.215500 kcal Electronic energy + Delta-G solvation = -18104.516918 eV Core-core repulsion = 15268.011866 eV Total energy + Delta-G solvation = -2836.505052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35650 -40.15893 -37.19467 -36.83816 -34.76306 -32.68449 -30.70487 -28.29937 -26.36179 -25.06032 -23.26766 -22.78265 -21.41338 -19.92545 -18.89614 -18.36136 -17.61455 -17.44930 -16.82866 -16.61547 -16.03088 -15.40446 -15.08419 -14.69910 -14.19611 -14.04064 -13.71450 -13.54566 -13.16083 -12.76220 -12.73834 -12.54440 -12.51384 -12.39586 -12.08405 -12.05132 -11.93670 -11.63887 -11.44412 -11.24413 -11.02273 -10.62058 -10.49800 -8.97922 -8.17537 -6.27607 1.25216 1.41914 1.42638 1.56322 2.12209 2.42956 3.01555 3.14729 3.34284 3.90832 3.95470 4.08241 4.19213 4.22395 4.42292 4.43752 4.47860 4.61927 4.74525 4.86474 4.89870 4.91894 4.98008 5.07313 5.12916 5.18745 5.34313 5.38721 5.43367 5.51861 5.65307 5.70231 6.09584 6.40555 6.63202 6.90217 7.05398 7.42144 8.93163 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.006935 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.027746 B = 4036.289893 C = 4743.958496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 H 0.064 0.936 4 C -0.151 4.151 5 C -0.183 4.183 6 C -0.170 4.170 7 N -0.528 5.528 8 C 0.206 3.794 9 C -0.515 4.515 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.938 5.938 13 Si 0.968 3.032 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.062 3.938 18 C -0.111 4.111 19 C 0.489 3.511 20 O -0.558 6.558 21 O -0.508 6.508 22 H 0.073 0.927 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.088 0.912 30 H -0.005 1.005 31 H -0.027 1.027 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -10.229 14.261 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.005 3.995 3 H 0.082 0.918 4 C -0.170 4.170 5 C -0.219 4.219 6 C -0.208 4.208 7 N -0.252 5.252 8 C 0.080 3.920 9 C -0.553 4.553 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.579 5.579 13 Si 0.793 3.207 14 H -0.185 1.185 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.067 4.067 18 C -0.148 4.148 19 C 0.333 3.667 20 O -0.449 6.449 21 O -0.321 6.321 22 H 0.092 0.908 23 H 0.046 0.954 24 H 0.090 0.910 25 H 0.132 0.868 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.013 0.987 31 H -0.009 1.009 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.295 -9.905 14.032 17.178 hybrid contribution -0.828 0.487 -1.145 1.495 sum -1.123 -9.418 12.886 16.000 Atomic orbital electron populations 1.22462 0.97871 1.02037 1.01101 1.21095 0.92065 0.97379 0.88971 0.91760 1.22359 1.00704 1.04203 0.89696 1.23307 0.97780 0.97933 1.02921 1.23039 1.03543 0.97026 0.97148 1.62106 1.55545 1.03528 1.03977 1.19414 0.94398 0.91087 0.87080 1.21488 1.14859 1.08090 1.10885 0.91681 1.25916 0.98051 1.00840 0.94988 1.70107 1.36988 1.35574 1.15182 0.85349 0.78741 0.78327 0.78305 1.18458 1.20648 1.20567 1.21845 0.96540 0.90092 0.98176 1.21638 1.02990 0.86140 1.04058 1.23688 0.78149 0.87412 0.77451 1.90716 1.34610 1.86592 1.33030 1.84501 1.67149 1.20882 1.59566 0.90840 0.95385 0.91003 0.86843 0.88466 0.86975 0.87284 0.89320 0.98692 1.00919 0.92831 0.93996 0.93496 0.86393 0.84498 0.71251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.89 6.81 71.98 0.49 -5.40 16 2 C 0.11 4.11 2.54 44.91 0.11 4.22 16 3 H 0.06 2.73 7.16 -2.38 -0.02 2.72 16 4 C -0.15 -4.05 3.81 -10.79 -0.04 -4.09 16 5 C -0.18 -3.73 7.85 30.60 0.24 -3.49 16 6 C -0.17 -3.69 10.03 30.60 0.31 -3.38 16 7 N -0.53 -22.17 4.36 -875.52 -3.82 -25.99 16 8 C 0.21 11.07 4.64 85.56 0.40 11.47 16 9 C -0.51 -29.13 8.33 25.60 0.21 -28.92 16 10 H 0.07 3.60 7.79 -2.91 -0.02 3.58 16 11 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 12 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 13 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C 0.06 2.28 4.10 86.30 0.35 2.63 16 18 C -0.11 -3.02 5.00 29.84 0.15 -2.87 16 19 C 0.49 12.96 8.33 71.23 0.59 13.55 16 20 O -0.56 -19.08 16.66 21.96 0.37 -18.72 16 21 O -0.51 -9.34 13.42 -51.41 -0.69 -10.03 16 22 H 0.07 2.09 7.70 -2.38 -0.02 2.08 16 23 H 0.03 1.11 6.65 -2.39 -0.02 1.09 16 24 H 0.07 2.15 5.05 -2.39 -0.01 2.14 16 25 H 0.11 3.02 7.48 -2.39 -0.02 3.00 16 26 H 0.10 2.04 5.80 -2.39 -0.01 2.02 16 27 H 0.11 1.81 8.07 -2.39 -0.02 1.79 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 30 H -0.01 -0.30 7.66 -2.39 -0.02 -0.31 16 31 H -0.03 -1.57 6.54 -2.39 -0.02 -1.59 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.04 1.56 5.29 -2.39 -0.01 1.55 16 34 H 0.05 1.96 7.39 -2.39 -0.02 1.94 16 35 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 36 H 0.14 3.19 3.93 -2.38 -0.01 3.18 16 37 H 0.43 4.08 9.10 -74.06 -0.67 3.40 16 Total: -1.00 -69.46 293.75 1.85 -67.61 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.41 Total: 13.38 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 3.28 Total: -15.84 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -3.54 Total: -82.91 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.32 Total: -28.75 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.46 1.85 -67.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308824029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.603 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds