Wall clock time and date at job start Mon Mar 30 2020 04:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47525 * 2 1 4 4 C 1.50702 * 109.47310 * 120.00528 * 2 1 3 5 5 O 1.20821 * 120.00061 * 124.58915 * 4 2 1 6 6 O 1.34230 * 119.99570 * 304.58462 * 4 2 1 7 7 N 1.46909 * 109.46747 * 239.99970 * 2 1 3 8 8 C 1.46901 * 110.99567 * 89.85509 * 7 2 1 9 9 C 1.50694 * 109.47728 * 65.34940 * 8 7 2 10 10 H 1.08003 * 119.99794 * 5.11136 * 9 8 7 11 11 C 1.37877 * 120.00728 * 185.11544 * 9 8 7 12 12 N 1.31521 * 119.99431 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00377 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47093 * 89.99587 * 13 11 9 15 15 H 1.48495 * 109.46823 * 209.99830 * 13 11 9 16 16 H 1.48502 * 109.46831 * 329.99713 * 13 11 9 17 17 C 1.46894 * 110.99825 * 325.90172 * 7 2 1 18 18 H 1.09001 * 109.47455 * 60.12683 * 17 7 2 19 19 C 1.53005 * 109.46866 * 180.12777 * 17 7 2 20 20 C 1.53000 * 109.47320 * 300.12432 * 17 7 2 21 21 C 1.53006 * 117.49746 * 252.68549 * 20 17 7 22 22 C 1.52996 * 117.50134 * 184.02461 * 20 17 7 23 23 H 1.08998 * 109.47432 * 186.59868 * 1 2 3 24 24 H 1.09008 * 109.46559 * 306.60203 * 1 2 3 25 25 H 1.08998 * 109.47160 * 66.59161 * 1 2 3 26 26 H 0.96704 * 116.99390 * 179.97438 * 6 4 2 27 27 H 1.08999 * 109.47255 * 185.35245 * 8 7 2 28 28 H 1.09006 * 109.47282 * 305.34740 * 8 7 2 29 29 H 0.96996 * 119.99397 * 180.02562 * 12 11 9 30 30 H 1.08992 * 109.47424 * 59.99837 * 19 17 7 31 31 H 1.09002 * 109.46906 * 299.99307 * 19 17 7 32 32 H 1.08998 * 109.47003 * 179.97438 * 19 17 7 33 33 H 1.09003 * 115.54973 * 38.34849 * 20 17 7 34 34 H 1.08998 * 117.49706 * 359.97438 * 21 20 17 35 35 H 1.08994 * 117.49629 * 145.01975 * 21 20 17 36 36 H 1.08998 * 117.49931 * 214.97825 * 22 20 17 37 37 H 1.09005 * 117.49675 * 359.97148 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7938 -1.6423 1.1214 6 8 1.6340 -0.3081 2.4474 7 7 2.0196 -0.6926 -1.1995 8 6 2.1917 0.2465 -2.3160 9 6 3.2832 1.2302 -1.9815 10 1 3.8535 1.1152 -1.0716 11 6 3.5537 2.2772 -2.8369 12 7 2.8595 2.4170 -3.9451 13 14 4.9071 3.4962 -2.4224 14 1 6.1927 3.0220 -2.9950 15 1 4.5698 4.8239 -2.9954 16 1 5.0348 3.6114 -0.9474 17 6 1.1243 -1.7958 -1.5727 18 1 0.1294 -1.4020 -1.7804 19 6 1.6677 -2.4933 -2.8214 20 6 1.0452 -2.8001 -0.4212 21 6 1.7608 -4.1403 -0.6023 22 6 0.2322 -4.0757 -0.6510 23 1 -0.3634 -1.0208 0.1181 24 1 -0.3633 0.6128 0.8251 25 1 -0.3633 0.4083 -0.9431 26 1 1.9827 -0.7950 3.2067 27 1 2.4632 -0.3051 -3.2161 28 1 1.2585 0.7833 -2.4865 29 1 3.0501 3.1533 -4.5471 30 1 2.6625 -2.8871 -2.6137 31 1 1.7240 -1.7778 -3.6417 32 1 1.0036 -3.3122 -3.0980 33 1 1.0316 -2.3680 0.5794 34 1 2.2877 -4.3066 -1.5419 35 1 2.2176 -4.5900 0.2792 36 1 -0.3160 -4.4830 0.1985 37 1 -0.2467 -4.1992 -1.6224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380283882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:44 Heat of formation + Delta-G solvation = -45.023828 kcal Electronic energy + Delta-G solvation = -18718.977775 eV Core-core repulsion = 15884.085476 eV Total energy + Delta-G solvation = -2834.892300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29411 -38.28059 -35.85514 -35.46665 -32.70941 -31.14571 -28.88775 -26.28625 -24.79105 -23.89994 -22.10076 -21.58757 -20.14122 -18.23036 -17.46063 -16.72986 -16.12597 -15.62823 -15.26806 -14.69840 -14.57698 -13.93706 -13.52201 -13.09235 -12.65545 -12.08413 -11.99180 -11.95656 -11.64829 -11.51933 -11.24558 -11.03887 -10.89297 -10.77134 -10.67214 -10.56219 -10.28601 -9.86283 -9.83478 -9.67069 -9.39037 -9.20466 -8.46615 -7.27748 -6.07549 -4.09164 2.80729 3.30448 3.36698 3.39823 3.45445 4.16414 4.40604 4.84197 5.07952 5.27290 5.32153 5.40342 5.51724 5.58523 5.68575 5.77607 5.84264 5.88724 6.05428 6.10710 6.19727 6.24950 6.33845 6.43447 6.45855 6.60429 6.62194 6.82283 6.93891 7.21044 7.28287 7.77037 7.97538 8.10403 8.44267 8.52026 8.98931 9.55528 11.02591 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.008400 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.619004 B = 3332.354105 C = 3910.335797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 H 0.130 0.870 4 C 0.476 3.524 5 O -0.489 6.489 6 O -0.527 6.527 7 N -0.510 5.510 8 C 0.190 3.810 9 C -0.513 4.513 10 H 0.062 0.938 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.109 3.891 18 H 0.042 0.958 19 C -0.148 4.148 20 C -0.135 4.135 21 C -0.165 4.165 22 C -0.196 4.196 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.398 0.602 27 H 0.043 0.957 28 H -0.001 1.001 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -7.644 7.696 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 H 0.148 0.852 4 C 0.317 3.683 5 O -0.374 6.374 6 O -0.339 6.339 7 N -0.236 5.236 8 C 0.066 3.934 9 C -0.551 4.551 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C 0.001 3.999 18 H 0.060 0.940 19 C -0.205 4.205 20 C -0.153 4.153 21 C -0.202 4.202 22 C -0.233 4.233 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.255 0.745 27 H 0.061 0.939 28 H 0.017 0.983 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.456 -7.771 7.239 11.939 hybrid contribution 0.293 0.721 0.511 0.931 sum -5.163 -7.050 7.750 11.680 Atomic orbital electron populations 1.22409 0.95392 1.02511 1.03147 1.21134 0.93666 0.99422 0.87119 0.85244 1.23949 0.78322 0.81898 0.84171 1.90693 1.32628 1.27485 1.86599 1.84601 1.70188 1.61951 1.17150 1.61786 1.45862 1.11023 1.04880 1.19898 0.96159 0.89378 0.87943 1.21162 1.17557 1.09191 1.07225 0.91950 1.24962 0.96544 0.97790 0.95025 1.69952 1.40429 1.31669 1.11440 0.86519 0.82152 0.80271 0.78632 1.20590 1.21268 1.19853 1.21121 0.94521 0.91177 0.93121 0.94027 1.22022 1.01284 0.99890 0.97281 1.22558 1.03438 0.89284 1.00016 1.22898 0.93403 1.00928 1.02932 1.23010 0.94649 1.03447 1.02238 0.91891 0.91691 0.91081 0.74521 0.93898 0.98331 0.92849 0.91569 0.91550 0.93309 0.88110 0.88381 0.89821 0.89765 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 7.70 37.16 0.29 -2.53 16 2 C 0.10 1.86 2.53 -68.86 -0.17 1.69 16 3 H 0.13 2.72 6.65 -51.93 -0.35 2.38 16 4 C 0.48 8.52 5.76 36.01 0.21 8.72 16 5 O -0.49 -9.89 14.80 -18.75 -0.28 -10.17 16 6 O -0.53 -7.42 13.27 -39.26 -0.52 -7.94 16 7 N -0.51 -10.86 3.87 -221.52 -0.86 -11.72 16 8 C 0.19 4.73 4.41 -4.98 -0.02 4.70 16 9 C -0.51 -14.00 8.02 -34.44 -0.28 -14.28 16 10 H 0.06 1.73 7.62 -52.48 -0.40 1.33 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 13 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.11 1.99 1.91 -67.71 -0.13 1.86 16 18 H 0.04 0.75 6.26 -51.93 -0.32 0.42 16 19 C -0.15 -2.58 7.51 37.16 0.28 -2.30 16 20 C -0.13 -2.23 3.09 -90.62 -0.28 -2.51 16 21 C -0.16 -2.53 9.64 -26.69 -0.26 -2.79 16 22 C -0.20 -2.68 9.88 -26.69 -0.26 -2.94 16 23 H 0.06 0.95 5.40 -51.93 -0.28 0.67 16 24 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 25 H 0.07 1.19 7.24 -51.93 -0.38 0.81 16 26 H 0.40 3.76 9.10 45.56 0.41 4.17 16 27 H 0.04 1.13 5.74 -51.93 -0.30 0.83 16 28 H 0.00 -0.03 7.63 -51.93 -0.40 -0.43 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.07 1.20 6.78 -51.93 -0.35 0.85 16 31 H 0.07 1.25 6.15 -51.93 -0.32 0.93 16 32 H 0.05 0.72 6.99 -51.93 -0.36 0.35 16 33 H 0.10 1.75 3.82 -51.93 -0.20 1.55 16 34 H 0.10 1.50 5.88 -51.93 -0.31 1.20 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.15 7.35 -51.93 -0.38 0.77 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -30.40 287.36 -6.67 -37.07 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.33 Total: 5.97 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.73 Total: -8.86 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.12 Total: -36.75 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.80 Total: -18.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.40 -6.67 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380283882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.958 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds