Wall clock time and date at job start Mon Mar 30 2020 04:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47525 * 2 1 4 4 C 1.50702 * 109.47310 * 120.00528 * 2 1 3 5 5 O 1.20821 * 120.00061 * 124.58915 * 4 2 1 6 6 O 1.34230 * 119.99570 * 304.58462 * 4 2 1 7 7 N 1.46909 * 109.46747 * 239.99970 * 2 1 3 8 8 C 1.46901 * 110.99567 * 89.85509 * 7 2 1 9 9 C 1.50694 * 109.47728 * 65.34940 * 8 7 2 10 10 H 1.08003 * 119.99794 * 5.11136 * 9 8 7 11 11 C 1.37877 * 120.00728 * 185.11544 * 9 8 7 12 12 N 1.31521 * 119.99431 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00377 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47093 * 89.99587 * 13 11 9 15 15 H 1.48495 * 109.46823 * 209.99830 * 13 11 9 16 16 H 1.48502 * 109.46831 * 329.99713 * 13 11 9 17 17 C 1.46894 * 110.99825 * 325.90172 * 7 2 1 18 18 H 1.09001 * 109.47455 * 60.12683 * 17 7 2 19 19 C 1.53005 * 109.46866 * 180.12777 * 17 7 2 20 20 C 1.53000 * 109.47320 * 300.12432 * 17 7 2 21 21 C 1.53006 * 117.49746 * 252.68549 * 20 17 7 22 22 C 1.52996 * 117.50134 * 184.02461 * 20 17 7 23 23 H 1.08998 * 109.47432 * 186.59868 * 1 2 3 24 24 H 1.09008 * 109.46559 * 306.60203 * 1 2 3 25 25 H 1.08998 * 109.47160 * 66.59161 * 1 2 3 26 26 H 0.96704 * 116.99390 * 179.97438 * 6 4 2 27 27 H 1.08999 * 109.47255 * 185.35245 * 8 7 2 28 28 H 1.09006 * 109.47282 * 305.34740 * 8 7 2 29 29 H 0.96996 * 119.99397 * 180.02562 * 12 11 9 30 30 H 1.08992 * 109.47424 * 59.99837 * 19 17 7 31 31 H 1.09002 * 109.46906 * 299.99307 * 19 17 7 32 32 H 1.08998 * 109.47003 * 179.97438 * 19 17 7 33 33 H 1.09003 * 115.54973 * 38.34849 * 20 17 7 34 34 H 1.08998 * 117.49706 * 359.97438 * 21 20 17 35 35 H 1.08994 * 117.49629 * 145.01975 * 21 20 17 36 36 H 1.08998 * 117.49931 * 214.97825 * 22 20 17 37 37 H 1.09005 * 117.49675 * 359.97148 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7938 -1.6423 1.1214 6 8 1.6340 -0.3081 2.4474 7 7 2.0196 -0.6926 -1.1995 8 6 2.1917 0.2465 -2.3160 9 6 3.2832 1.2302 -1.9815 10 1 3.8535 1.1152 -1.0716 11 6 3.5537 2.2772 -2.8369 12 7 2.8595 2.4170 -3.9451 13 14 4.9071 3.4962 -2.4224 14 1 6.1927 3.0220 -2.9950 15 1 4.5698 4.8239 -2.9954 16 1 5.0348 3.6114 -0.9474 17 6 1.1243 -1.7958 -1.5727 18 1 0.1294 -1.4020 -1.7804 19 6 1.6677 -2.4933 -2.8214 20 6 1.0452 -2.8001 -0.4212 21 6 1.7608 -4.1403 -0.6023 22 6 0.2322 -4.0757 -0.6510 23 1 -0.3634 -1.0208 0.1181 24 1 -0.3633 0.6128 0.8251 25 1 -0.3633 0.4083 -0.9431 26 1 1.9827 -0.7950 3.2067 27 1 2.4632 -0.3051 -3.2161 28 1 1.2585 0.7833 -2.4865 29 1 3.0501 3.1533 -4.5471 30 1 2.6625 -2.8871 -2.6137 31 1 1.7240 -1.7778 -3.6417 32 1 1.0036 -3.3122 -3.0980 33 1 1.0316 -2.3680 0.5794 34 1 2.2877 -4.3066 -1.5419 35 1 2.2176 -4.5900 0.2792 36 1 -0.3160 -4.4830 0.1985 37 1 -0.2467 -4.1992 -1.6224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380283882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:44 Heat of formation + Delta-G solvation = -65.485370 kcal Electronic energy + Delta-G solvation = -18719.865055 eV Core-core repulsion = 15884.085476 eV Total energy + Delta-G solvation = -2835.779579 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71388 -39.65587 -37.25872 -36.83238 -34.75393 -32.60817 -30.59611 -28.04154 -26.19117 -25.56571 -23.46092 -23.01503 -21.59647 -19.67352 -18.82714 -18.51474 -17.81948 -17.05063 -16.81221 -16.33460 -16.07731 -15.42154 -14.97964 -14.50659 -14.40089 -13.71161 -13.48316 -13.39430 -13.24868 -12.98131 -12.81654 -12.61010 -12.52067 -12.30275 -12.15184 -12.06562 -11.94332 -11.38768 -11.34501 -11.25994 -10.90591 -10.70736 -10.55930 -8.94905 -8.19657 -6.28769 1.38795 1.40744 1.41876 1.52179 2.10953 2.40414 2.93190 3.12653 3.40121 3.80626 4.00089 4.15395 4.20799 4.24233 4.33754 4.45458 4.46029 4.67548 4.76517 4.81991 4.83235 4.93434 5.00253 5.09147 5.13996 5.28395 5.32139 5.34391 5.35590 5.43733 5.66706 5.72826 6.08208 6.28510 6.63714 6.86330 7.20996 7.40318 8.90128 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.008400 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.619004 B = 3332.354105 C = 3910.335797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 H 0.105 0.895 4 C 0.487 3.513 5 O -0.515 6.515 6 O -0.513 6.513 7 N -0.524 5.524 8 C 0.208 3.792 9 C -0.526 4.526 10 H 0.053 0.947 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.960 3.040 14 H -0.277 1.277 15 H -0.279 1.279 16 H -0.268 1.268 17 C 0.107 3.893 18 H 0.045 0.955 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.173 4.173 22 C -0.165 4.165 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.422 0.578 27 H 0.022 0.978 28 H -0.023 1.023 29 H 0.265 0.735 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -8.299 9.095 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 H 0.123 0.877 4 C 0.329 3.671 5 O -0.403 6.403 6 O -0.327 6.327 7 N -0.249 5.249 8 C 0.083 3.917 9 C -0.564 4.564 10 H 0.071 0.929 11 C -0.189 4.189 12 N -0.567 5.567 13 Si 0.785 3.215 14 H -0.203 1.203 15 H -0.204 1.204 16 H -0.192 1.192 17 C -0.001 4.001 18 H 0.062 0.938 19 C -0.199 4.199 20 C -0.171 4.171 21 C -0.210 4.210 22 C -0.202 4.202 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.283 0.717 27 H 0.040 0.960 28 H -0.005 1.005 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.083 -8.435 8.680 13.546 hybrid contribution 0.457 0.897 0.144 1.017 sum -5.626 -7.538 8.825 12.898 Atomic orbital electron populations 1.22306 0.92926 1.03691 1.03334 1.21108 0.95705 0.98104 0.87232 0.87732 1.23452 0.77646 0.81168 0.84825 1.90689 1.33770 1.28658 1.87199 1.84514 1.69632 1.61787 1.16751 1.61688 1.47883 1.10979 1.04359 1.19490 0.94360 0.89172 0.88694 1.21401 1.18075 1.10058 1.06866 0.92901 1.25756 0.98713 0.99545 0.94841 1.70056 1.41883 1.32427 1.12316 0.85521 0.79193 0.78124 0.78630 1.20291 1.20428 1.19207 1.21207 0.93932 0.90683 0.94244 0.93761 1.21968 1.01439 1.00139 0.96319 1.22416 1.06338 0.89634 0.98739 1.22930 0.95049 1.00112 1.02867 1.23105 0.93510 0.99913 1.03722 0.90553 0.89597 0.92328 0.71682 0.95986 1.00543 0.92629 0.92713 0.93833 0.90213 0.88742 0.88710 0.89761 0.87673 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 7.70 71.98 0.55 -4.54 16 2 C 0.09 3.41 2.53 44.17 0.11 3.52 16 3 H 0.10 4.51 6.65 -2.39 -0.02 4.49 16 4 C 0.49 16.89 5.76 71.24 0.41 17.30 16 5 O -0.52 -20.43 14.80 21.98 0.33 -20.10 16 6 O -0.51 -13.20 13.27 -51.41 -0.68 -13.88 16 7 N -0.52 -22.71 3.87 -854.75 -3.31 -26.02 16 8 C 0.21 10.75 4.41 85.56 0.38 11.13 16 9 C -0.53 -29.49 8.02 25.60 0.21 -29.28 16 10 H 0.05 3.00 7.62 -2.91 -0.02 2.98 16 11 C 0.01 0.58 5.46 84.65 0.46 1.04 16 12 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 13 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 17 C 0.11 3.87 1.91 44.92 0.09 3.96 16 18 H 0.04 1.57 6.26 -2.39 -0.01 1.55 16 19 C -0.14 -4.94 7.51 71.98 0.54 -4.40 16 20 C -0.15 -4.80 3.09 -10.79 -0.03 -4.83 16 21 C -0.17 -4.99 9.64 30.62 0.30 -4.70 16 22 C -0.17 -3.97 9.88 30.62 0.30 -3.67 16 23 H 0.08 2.16 5.40 -2.39 -0.01 2.14 16 24 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.06 1.95 7.24 -2.39 -0.02 1.94 16 26 H 0.42 6.69 9.10 -74.05 -0.67 6.02 16 27 H 0.02 1.22 5.74 -2.39 -0.01 1.21 16 28 H -0.02 -1.27 7.63 -2.38 -0.02 -1.29 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.05 2.01 6.78 -2.39 -0.02 1.99 16 31 H 0.04 1.69 6.15 -2.39 -0.01 1.68 16 32 H 0.08 2.23 6.99 -2.39 -0.02 2.21 16 33 H 0.09 3.11 3.82 -2.39 -0.01 3.10 16 34 H 0.09 2.78 5.88 -2.39 -0.01 2.77 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.10 2.23 7.35 -2.38 -0.02 2.22 16 Total: -1.00 -65.86 287.36 2.37 -63.49 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.41 Total: 18.87 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 3.31 Total: -14.46 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -3.03 Total: -80.10 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.36 Total: -33.98 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -65.86 2.37 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380283882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.995 kcal (2) G-P(sol) polarization free energy of solvation -65.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds