Wall clock time and date at job start Mon Mar 30 2020 04:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.45893 * 2 1 4 4 C 1.53035 * 109.46162 * 240.02682 * 2 1 3 5 5 H 1.09001 * 109.53245 * 179.20049 * 4 2 1 6 6 C 1.50696 * 109.50783 * 59.09825 * 4 2 1 7 7 O 1.20828 * 119.99791 * 0.20088 * 6 4 2 8 8 O 1.34228 * 120.00123 * 180.19541 * 6 4 2 9 9 C 1.53125 * 109.27580 * 299.15379 * 4 2 1 10 10 C 1.53114 * 109.16368 * 302.35133 * 9 4 2 11 11 C 1.53037 * 109.31211 * 57.63311 * 10 9 4 12 12 N 1.46840 * 109.46363 * 119.96543 * 2 1 3 13 13 C 1.46895 * 111.00367 * 294.17932 * 12 2 1 14 14 C 1.52996 * 109.47373 * 190.00264 * 13 12 2 15 15 C 1.50702 * 109.47388 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99810 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99950 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00159 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99767 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47082 * 59.99806 * 19 17 15 21 21 H 1.48498 * 109.46927 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47124 * 299.99528 * 19 17 15 23 23 H 1.09001 * 109.46874 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47009 * 299.97326 * 1 2 3 25 25 H 1.08995 * 109.47682 * 59.98166 * 1 2 3 26 26 H 0.96694 * 117.00108 * 179.97438 * 8 6 4 27 27 H 1.08998 * 109.52257 * 182.44326 * 9 4 2 28 28 H 1.09004 * 109.56800 * 62.29036 * 9 4 2 29 29 H 1.09002 * 109.50377 * 177.59436 * 10 9 4 30 30 H 1.09003 * 109.50316 * 297.67431 * 10 9 4 31 31 H 1.09000 * 109.46159 * 60.85546 * 11 10 9 32 32 H 1.09000 * 109.46461 * 180.82902 * 11 10 9 33 33 H 1.09006 * 109.47095 * 309.99856 * 13 12 2 34 34 H 1.08994 * 109.47117 * 69.99934 * 13 12 2 35 35 H 1.09008 * 109.47411 * 299.99935 * 14 13 12 36 36 H 1.09003 * 109.47446 * 59.99598 * 14 13 12 37 37 H 0.97004 * 120.00148 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 1 3.1298 -0.7091 -1.2583 6 6 1.5197 -0.0235 -2.4804 7 8 0.8163 0.9527 -2.3697 8 8 1.8379 -0.4868 -3.6994 9 6 1.5444 -2.1697 -1.2354 10 6 2.0271 -2.8531 0.0469 11 6 1.5183 -2.0706 1.2598 12 7 2.0193 -0.6915 1.1994 13 6 1.6651 0.0509 2.4165 14 6 2.3962 -0.5566 3.6154 15 6 2.0323 0.2046 4.8641 16 1 1.3485 1.0385 4.8081 17 6 2.5734 -0.1630 6.0778 18 7 3.4066 -1.1783 6.1459 19 14 2.1219 0.7801 7.6257 20 1 0.6557 0.6964 7.8464 21 1 2.8315 0.1905 8.7893 22 1 2.5190 2.2027 7.4721 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8902 25 1 -0.3634 0.5141 -0.8897 26 1 1.4803 -0.0065 -4.4586 27 1 1.9410 -2.6990 -2.1017 28 1 0.4549 -2.1832 -1.2676 29 1 1.6417 -3.8721 0.0835 30 1 3.1168 -2.8755 0.0593 31 1 0.4284 -2.0610 1.2546 32 1 1.8728 -2.5467 2.1740 33 1 1.9578 1.0948 2.3034 34 1 0.5890 -0.0093 2.5785 35 1 2.1036 -1.6006 3.7285 36 1 3.4724 -0.4965 3.4533 37 1 3.7870 -1.4371 6.9999 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384251932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:01 Heat of formation + Delta-G solvation = -100.170533 kcal Electronic energy + Delta-G solvation = -18042.765822 eV Core-core repulsion = 15205.482181 eV Total energy + Delta-G solvation = -2837.283640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85393 -38.80949 -36.24055 -34.31625 -32.60064 -31.70453 -29.45300 -27.41570 -25.03961 -24.17299 -22.52734 -21.72057 -20.04538 -18.39018 -18.08706 -16.84853 -16.26446 -15.92179 -15.24223 -14.72983 -14.37545 -14.15674 -13.83819 -13.34629 -13.10593 -12.80633 -12.54225 -12.18791 -12.01299 -11.76208 -11.32321 -11.16819 -11.09752 -10.89925 -10.70795 -10.64505 -10.46706 -10.16521 -10.08265 -9.72101 -9.32319 -9.10840 -8.30777 -7.67761 -5.98012 -4.00155 2.12925 2.92291 3.34913 3.39170 3.41796 4.40406 4.56898 4.59298 4.80804 4.96643 5.29858 5.32363 5.37850 5.41565 5.62373 5.67131 5.71652 5.84995 5.93020 5.98512 6.06784 6.19039 6.30098 6.33040 6.43222 6.49206 6.56201 6.67565 6.99645 7.50895 7.59199 7.78331 7.85157 7.91972 8.09846 8.45515 9.06817 9.63360 11.13305 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045168 B = 0.005086 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.754276 B = 5503.944112 C = 5857.036370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.097 3.903 3 H 0.086 0.914 4 C -0.071 4.071 5 H 0.116 0.884 6 C 0.484 3.516 7 O -0.510 6.510 8 O -0.517 6.517 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.046 3.954 12 N -0.531 5.531 13 C 0.065 3.935 14 C 0.028 3.972 15 C -0.522 4.522 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.406 0.594 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.017 0.983 36 H 0.024 0.976 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 -2.120 -17.324 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.012 4.012 3 H 0.104 0.896 4 C -0.091 4.091 5 H 0.134 0.866 6 C 0.327 3.673 7 O -0.398 6.398 8 O -0.329 6.329 9 C -0.148 4.148 10 C -0.152 4.152 11 C -0.082 4.082 12 N -0.254 5.254 13 C -0.062 4.062 14 C -0.009 4.009 15 C -0.561 4.561 16 H 0.071 0.929 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.264 0.736 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.909 -2.188 -16.835 17.224 hybrid contribution -1.340 0.921 0.449 1.687 sum -4.249 -1.267 -16.385 16.975 Atomic orbital electron populations 1.22730 0.97424 1.02032 1.03655 1.21396 0.93282 0.97686 0.88832 0.89630 1.21099 1.03124 0.96169 0.88695 0.86590 1.23644 0.76962 0.82099 0.84637 1.90661 1.35549 1.26644 1.86975 1.84560 1.71956 1.59454 1.16899 1.21593 1.01028 0.92678 0.99465 1.21593 1.02066 0.98243 0.93301 1.22195 0.97277 0.89723 0.99035 1.62181 1.59140 1.02041 1.02085 1.22325 0.97772 0.97110 0.88966 1.19104 0.96171 0.95884 0.89726 1.21160 1.27130 1.15341 0.92471 0.92879 1.24974 0.95083 0.95167 0.98984 1.69957 1.30764 1.27027 1.25525 0.86668 0.78525 0.80200 0.82654 1.20326 1.21288 1.20240 0.92634 0.92165 0.90365 0.73602 0.90881 0.91649 0.91308 0.90716 0.94940 0.89233 0.92100 0.95823 0.96445 0.95717 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 7.85 37.16 0.29 -2.71 16 2 C 0.10 1.49 2.11 -67.73 -0.14 1.35 16 3 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 4 C -0.07 -0.90 2.58 -91.69 -0.24 -1.13 16 5 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 6 C 0.48 5.84 7.33 36.00 0.26 6.10 16 7 O -0.51 -7.48 14.37 -18.75 -0.27 -7.75 16 8 O -0.52 -4.67 13.35 -39.25 -0.52 -5.20 16 9 C -0.11 -1.24 4.90 -26.61 -0.13 -1.37 16 10 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 11 C 0.05 0.74 5.00 -3.83 -0.02 0.72 16 12 N -0.53 -9.43 4.60 -226.70 -1.04 -10.48 16 13 C 0.06 1.37 4.36 -3.83 -0.02 1.35 16 14 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.05 0.79 4.80 -51.93 -0.25 0.54 16 24 H 0.06 0.97 6.77 -51.93 -0.35 0.62 16 25 H 0.08 1.18 5.45 -51.93 -0.28 0.90 16 26 H 0.41 1.92 9.10 45.56 0.41 2.33 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.52 6.20 -51.93 -0.32 0.20 16 32 H 0.09 1.65 6.21 -51.93 -0.32 1.33 16 33 H 0.06 1.29 7.99 -51.93 -0.41 0.88 16 34 H 0.02 0.50 6.95 -51.93 -0.36 0.14 16 35 H 0.02 0.47 6.43 -51.92 -0.33 0.13 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -31.57 287.38 -7.12 -38.70 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.63 Total: -0.02 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.70 Total: -10.21 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.31 Total: -36.55 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.79 Total: -12.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.57 -7.12 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384251932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.474 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds