Wall clock time and date at job start Mon Mar 30 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.69751 * 2 1 4 4 C 1.53345 * 109.67318 * 239.48654 * 2 1 3 5 5 C 1.52918 * 108.67495 * 172.73450 * 4 2 1 6 6 N 1.45756 * 110.48790 * 50.75142 * 5 4 2 7 7 C 1.46496 * 117.94811 * 160.64344 * 6 5 4 8 8 C 1.52999 * 109.47415 * 89.99684 * 7 6 5 9 9 O 1.42909 * 109.46741 * 65.00133 * 8 7 6 10 10 C 1.42905 * 113.99563 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46945 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99552 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00131 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00087 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99881 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47238 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46963 * 120.00611 * 15 13 11 18 18 H 1.48507 * 109.47309 * 240.00091 * 15 13 11 19 19 C 1.33356 * 124.10419 * 340.92068 * 6 5 4 20 20 O 1.21285 * 118.24163 * 182.22709 * 19 6 5 21 21 C 1.50171 * 123.50899 * 2.23315 * 19 6 5 22 22 H 1.09003 * 109.46864 * 180.51240 * 1 2 3 23 23 H 1.08998 * 109.46995 * 300.51556 * 1 2 3 24 24 H 1.08999 * 109.46910 * 60.51880 * 1 2 3 25 25 H 1.09002 * 109.60934 * 52.97639 * 4 2 1 26 26 H 1.08997 * 109.73899 * 292.56995 * 4 2 1 27 27 H 1.08999 * 109.30303 * 290.44286 * 5 4 2 28 28 H 1.09001 * 109.13649 * 170.95557 * 5 4 2 29 29 H 1.09003 * 109.47440 * 209.99936 * 7 6 5 30 30 H 1.08998 * 109.47038 * 330.00072 * 7 6 5 31 31 H 1.09000 * 109.47690 * 184.99538 * 8 7 6 32 32 H 1.09002 * 109.47281 * 305.00399 * 8 7 6 33 33 H 1.08994 * 109.46783 * 299.99566 * 10 9 8 34 34 H 1.09000 * 109.47435 * 60.00217 * 10 9 8 35 35 H 0.97001 * 119.99738 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.39994 * 222.28116 * 21 19 6 37 37 H 1.09003 * 109.40690 * 102.54156 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0463 -0.7331 -1.2440 5 6 3.5643 -0.5638 -1.3174 6 7 4.1795 -0.9197 -0.0449 7 6 5.6095 -1.2377 -0.0388 8 6 6.4152 0.0403 0.2029 9 8 6.1335 0.5405 1.5116 10 6 6.8387 1.7394 1.8397 11 6 6.4684 2.1742 3.2343 12 1 5.7647 1.5934 3.8121 13 6 7.0281 3.3135 3.7727 14 7 7.8847 4.0210 3.0689 15 14 6.5685 3.8528 5.5010 16 1 5.5921 2.8930 6.0760 17 1 7.7870 3.8868 6.3494 18 1 5.9616 5.2074 5.4521 19 6 3.5210 -0.9792 1.1132 20 8 4.1475 -1.2474 2.1165 21 6 2.0454 -0.7319 1.2416 22 1 -0.3633 -1.0277 0.0092 23 1 -0.3633 0.5218 0.8853 24 1 -0.3633 0.5058 -0.8946 25 1 1.5872 -0.3075 -2.1363 26 1 1.7994 -1.7926 -1.1758 27 1 3.8000 0.4738 -1.5537 28 1 3.9584 -1.2103 -2.1014 29 1 5.8189 -1.9548 0.7550 30 1 5.8902 -1.6677 -1.0002 31 1 7.4795 -0.1798 0.1195 32 1 6.1397 0.7894 -0.5394 33 1 7.9118 1.5548 1.7900 34 1 6.5716 2.5235 1.1313 35 1 8.2787 4.8223 3.4478 36 1 1.8559 -0.1229 2.1256 37 1 1.5258 -1.6849 1.3419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385234539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:46 Heat of formation + Delta-G solvation = -95.655235 kcal Electronic energy + Delta-G solvation = -17967.450947 eV Core-core repulsion = 15130.363105 eV Total energy + Delta-G solvation = -2837.087842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19025 -36.68799 -36.45896 -34.61014 -32.59736 -30.25526 -29.18695 -27.55339 -26.46806 -23.76028 -22.50430 -22.00586 -20.91324 -18.36826 -16.49274 -16.35713 -16.30963 -15.33057 -15.17519 -14.70931 -14.34753 -14.17500 -14.14894 -13.19760 -13.14339 -12.88683 -12.55751 -12.27878 -11.92864 -11.81539 -11.52924 -11.35746 -11.00264 -10.80038 -10.74853 -10.73779 -10.64459 -10.48302 -9.97922 -9.16682 -8.97010 -8.71007 -8.29960 -8.04976 -6.02460 -4.02306 3.15793 3.34775 3.35033 3.40801 3.49891 4.43476 4.59492 4.64299 4.65824 4.79246 5.00352 5.23787 5.33998 5.35661 5.43302 5.51819 5.56467 5.64627 5.66981 5.75142 5.77669 5.84378 5.95520 6.03261 6.04189 6.13594 6.25135 6.38208 6.80681 7.18474 7.51718 7.86626 7.91745 8.26955 8.70930 8.73065 9.14491 9.62342 11.09471 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.006229 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.742907 B = 4493.887269 C = 5031.662188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.128 4.128 5 C 0.115 3.885 6 N -0.603 5.603 7 C 0.113 3.887 8 C 0.046 3.954 9 O -0.373 6.373 10 C 0.194 3.806 11 C -0.505 4.505 12 H 0.067 0.933 13 C 0.054 3.946 14 N -0.902 5.902 15 Si 0.905 3.095 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.514 3.486 20 O -0.520 6.520 21 C -0.127 4.127 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.002 0.998 34 H 0.000 1.000 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 -9.615 -11.930 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.166 4.166 5 C -0.009 4.009 6 N -0.338 5.338 7 C -0.009 4.009 8 C -0.033 4.033 9 O -0.293 6.293 10 C 0.119 3.881 11 C -0.543 4.543 12 H 0.086 0.914 13 C -0.147 4.147 14 N -0.542 5.542 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.301 3.699 20 O -0.395 6.395 21 C -0.166 4.166 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.248 -9.688 -11.230 19.235 hybrid contribution 0.157 0.734 0.472 0.887 sum -12.091 -8.954 -10.757 18.496 Atomic orbital electron populations 1.21806 0.94514 1.01812 1.02032 1.21265 0.96067 1.00334 0.93998 0.90067 1.21928 0.94547 1.01334 0.98760 1.21338 0.93216 1.00728 0.85597 1.47154 1.09573 1.69466 1.07615 1.21564 0.79883 0.97541 1.01953 1.22616 0.97246 0.94971 0.88458 1.88070 1.68670 1.44178 1.28336 1.20169 0.90991 0.80930 0.95987 1.21131 1.25663 1.08653 0.98880 0.91432 1.24944 0.95104 0.96143 0.98463 1.69983 1.29986 1.16945 1.37336 0.86311 0.78393 0.78341 0.83675 1.19415 1.20867 1.20938 1.19936 0.89655 0.77426 0.82848 1.90792 1.67586 1.46628 1.34476 1.21703 0.92449 1.02473 1.00019 0.92648 0.92293 0.92482 0.90128 0.91188 0.91949 0.91136 0.89175 0.90286 0.93979 0.94913 0.98030 0.98248 0.92891 0.88332 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.16 0.34 -0.84 16 2 C -0.10 -1.03 2.80 -90.41 -0.25 -1.28 16 3 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 4 C -0.13 -1.12 5.32 -26.60 -0.14 -1.26 16 5 C 0.11 1.24 6.39 -4.49 -0.03 1.21 16 6 N -0.60 -9.26 2.80 -174.97 -0.49 -9.75 16 7 C 0.11 1.80 5.74 -4.04 -0.02 1.78 16 8 C 0.05 0.91 6.28 37.16 0.23 1.14 16 9 O -0.37 -9.80 8.78 -50.50 -0.44 -10.24 16 10 C 0.19 5.67 5.69 36.01 0.20 5.87 16 11 C -0.50 -15.86 9.43 -34.44 -0.32 -16.19 16 12 H 0.07 2.18 7.81 -52.49 -0.41 1.77 16 13 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -28.08 13.29 55.43 0.74 -27.35 16 15 Si 0.91 22.98 29.54 -169.99 -5.02 17.96 16 16 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 C 0.51 9.17 7.12 -11.87 -0.08 9.08 16 20 O -0.52 -12.03 15.08 -9.72 -0.15 -12.18 16 21 C -0.13 -1.69 5.36 -28.11 -0.15 -1.84 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 29 H 0.09 1.61 7.20 -51.93 -0.37 1.24 16 30 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 34 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -36.57 304.45 -7.33 -43.90 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -6.23 Total: -6.14 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.32 Total: -0.79 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.25 Total: -37.10 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.59 Total: -22.42 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.57 -7.33 -43.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385234539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.753 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds