Wall clock time and date at job start Mon Mar 30 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.69751 * 2 1 4 4 C 1.53345 * 109.67318 * 239.48654 * 2 1 3 5 5 C 1.52918 * 108.67495 * 172.73450 * 4 2 1 6 6 N 1.45756 * 110.48790 * 50.75142 * 5 4 2 7 7 C 1.46496 * 117.94811 * 160.64344 * 6 5 4 8 8 C 1.52999 * 109.47415 * 89.99684 * 7 6 5 9 9 O 1.42909 * 109.46741 * 65.00133 * 8 7 6 10 10 C 1.42905 * 113.99563 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46945 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99552 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00131 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00087 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99881 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47238 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46963 * 120.00611 * 15 13 11 18 18 H 1.48507 * 109.47309 * 240.00091 * 15 13 11 19 19 C 1.33356 * 124.10419 * 340.92068 * 6 5 4 20 20 O 1.21285 * 118.24163 * 182.22709 * 19 6 5 21 21 C 1.50171 * 123.50899 * 2.23315 * 19 6 5 22 22 H 1.09003 * 109.46864 * 180.51240 * 1 2 3 23 23 H 1.08998 * 109.46995 * 300.51556 * 1 2 3 24 24 H 1.08999 * 109.46910 * 60.51880 * 1 2 3 25 25 H 1.09002 * 109.60934 * 52.97639 * 4 2 1 26 26 H 1.08997 * 109.73899 * 292.56995 * 4 2 1 27 27 H 1.08999 * 109.30303 * 290.44286 * 5 4 2 28 28 H 1.09001 * 109.13649 * 170.95557 * 5 4 2 29 29 H 1.09003 * 109.47440 * 209.99936 * 7 6 5 30 30 H 1.08998 * 109.47038 * 330.00072 * 7 6 5 31 31 H 1.09000 * 109.47690 * 184.99538 * 8 7 6 32 32 H 1.09002 * 109.47281 * 305.00399 * 8 7 6 33 33 H 1.08994 * 109.46783 * 299.99566 * 10 9 8 34 34 H 1.09000 * 109.47435 * 60.00217 * 10 9 8 35 35 H 0.97001 * 119.99738 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.39994 * 222.28116 * 21 19 6 37 37 H 1.09003 * 109.40690 * 102.54156 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0463 -0.7331 -1.2440 5 6 3.5643 -0.5638 -1.3174 6 7 4.1795 -0.9197 -0.0449 7 6 5.6095 -1.2377 -0.0388 8 6 6.4152 0.0403 0.2029 9 8 6.1335 0.5405 1.5116 10 6 6.8387 1.7394 1.8397 11 6 6.4684 2.1742 3.2343 12 1 5.7647 1.5934 3.8121 13 6 7.0281 3.3135 3.7727 14 7 7.8847 4.0210 3.0689 15 14 6.5685 3.8528 5.5010 16 1 5.5921 2.8930 6.0760 17 1 7.7870 3.8868 6.3494 18 1 5.9616 5.2074 5.4521 19 6 3.5210 -0.9792 1.1132 20 8 4.1475 -1.2474 2.1165 21 6 2.0454 -0.7319 1.2416 22 1 -0.3633 -1.0277 0.0092 23 1 -0.3633 0.5218 0.8853 24 1 -0.3633 0.5058 -0.8946 25 1 1.5872 -0.3075 -2.1363 26 1 1.7994 -1.7926 -1.1758 27 1 3.8000 0.4738 -1.5537 28 1 3.9584 -1.2103 -2.1014 29 1 5.8189 -1.9548 0.7550 30 1 5.8902 -1.6677 -1.0002 31 1 7.4795 -0.1798 0.1195 32 1 6.1397 0.7894 -0.5394 33 1 7.9118 1.5548 1.7900 34 1 6.5716 2.5235 1.1313 35 1 8.2787 4.8223 3.4478 36 1 1.8559 -0.1229 2.1256 37 1 1.5258 -1.6849 1.3419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385234539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:46 Heat of formation + Delta-G solvation = -120.587673 kcal Electronic energy + Delta-G solvation = -17968.532099 eV Core-core repulsion = 15130.363105 eV Total energy + Delta-G solvation = -2838.168994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42577 -38.54366 -37.67499 -35.92593 -34.87344 -31.49795 -30.38646 -29.27983 -28.01574 -24.73512 -24.52963 -23.67663 -21.88448 -19.48208 -18.67133 -17.80748 -17.69541 -17.08274 -16.58634 -16.31174 -16.10100 -15.57639 -15.24934 -14.89368 -14.28105 -14.06288 -13.90323 -13.54890 -13.30413 -13.09495 -12.93961 -12.77001 -12.68915 -12.50873 -12.42145 -12.06386 -11.94909 -11.59831 -11.47455 -11.29290 -10.92088 -10.52998 -10.21186 -9.59252 -8.36973 -6.48771 1.33331 1.35574 1.51100 1.80696 2.17864 2.31622 2.95608 3.22755 3.70763 3.80338 3.82053 3.93038 4.20049 4.22187 4.44562 4.48758 4.54275 4.56595 4.62493 4.74261 4.76084 4.84743 4.86886 4.96379 5.01188 5.08520 5.12656 5.21839 5.36222 5.47845 5.50564 5.61880 5.93593 6.51648 6.62858 6.83393 7.23820 7.39501 8.75712 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.006229 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.742907 B = 4493.887269 C = 5031.662188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.059 0.941 4 C -0.120 4.120 5 C 0.104 3.896 6 N -0.602 5.602 7 C 0.118 3.882 8 C 0.033 3.967 9 O -0.395 6.395 10 C 0.211 3.789 11 C -0.546 4.546 12 H 0.048 0.952 13 C 0.009 3.991 14 N -0.929 5.929 15 Si 0.981 3.019 16 H -0.272 1.272 17 H -0.266 1.266 18 H -0.264 1.264 19 C 0.500 3.500 20 O -0.589 6.589 21 C -0.123 4.123 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.052 0.948 32 H 0.043 0.957 33 H -0.017 1.017 34 H -0.018 1.018 35 H 0.272 0.728 36 H 0.079 0.921 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 -9.779 -13.293 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.077 0.923 4 C -0.157 4.157 5 C -0.018 4.018 6 N -0.334 5.334 7 C -0.005 4.005 8 C -0.045 4.045 9 O -0.315 6.315 10 C 0.135 3.865 11 C -0.583 4.583 12 H 0.066 0.934 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.804 3.196 16 H -0.197 1.197 17 H -0.191 1.191 18 H -0.189 1.189 19 C 0.289 3.711 20 O -0.469 6.469 21 C -0.162 4.162 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.001 0.999 34 H 0.000 1.000 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.694 -9.848 -12.670 21.096 hybrid contribution 0.647 0.768 0.784 1.274 sum -13.047 -9.080 -11.886 19.848 Atomic orbital electron populations 1.21762 0.92297 1.02929 1.02560 1.21254 0.97813 0.98859 0.93478 0.92273 1.21948 0.92829 1.02146 0.98793 1.21731 0.94825 1.01193 0.84012 1.47351 1.09334 1.68016 1.08711 1.21609 0.80104 0.94896 1.03908 1.23050 0.98909 0.96818 0.85695 1.88053 1.68448 1.42844 1.32130 1.19764 0.89950 0.81742 0.94999 1.21334 1.26816 1.10006 1.00161 0.93410 1.25930 0.94326 0.95448 1.03271 1.70063 1.30068 1.17261 1.39408 0.85177 0.78604 0.78297 0.77564 1.19676 1.19094 1.18918 1.20816 0.91383 0.76247 0.82656 1.90755 1.69338 1.49914 1.36891 1.21720 0.89779 1.03777 1.00972 0.91180 0.93028 0.90792 0.87041 0.89771 0.92516 0.87558 0.91669 0.84676 0.93022 0.93882 0.99928 0.99992 0.91903 0.90273 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.20 71.98 0.66 -1.24 16 2 C -0.10 -1.85 2.80 -10.66 -0.03 -1.88 16 3 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 4 C -0.12 -1.68 5.32 30.68 0.16 -1.52 16 5 C 0.10 1.95 6.39 86.49 0.55 2.50 16 6 N -0.60 -17.99 2.80 -826.65 -2.32 -20.31 16 7 C 0.12 3.67 5.74 86.38 0.50 4.17 16 8 C 0.03 1.33 6.28 71.98 0.45 1.78 16 9 O -0.40 -21.73 8.78 -134.38 -1.18 -22.91 16 10 C 0.21 12.91 5.69 71.24 0.41 13.32 16 11 C -0.55 -35.63 9.43 25.60 0.24 -35.39 16 12 H 0.05 3.23 7.81 -2.91 -0.02 3.21 16 13 C 0.01 0.53 5.46 84.65 0.46 0.99 16 14 N -0.93 -58.26 13.29 21.44 0.28 -57.97 16 15 Si 0.98 47.46 29.54 68.60 2.03 49.49 16 16 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.50 18.27 7.12 87.71 0.62 18.90 16 20 O -0.59 -28.85 15.08 11.56 0.17 -28.67 16 21 C -0.12 -3.28 5.36 29.70 0.16 -3.12 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.11 1.29 7.92 -2.39 -0.02 1.27 16 29 H 0.06 2.39 7.20 -2.39 -0.02 2.37 16 30 H 0.14 2.67 7.86 -2.39 -0.02 2.65 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 34 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.12 2.48 8.10 -2.39 -0.02 2.46 16 Total: -1.00 -83.97 304.45 4.20 -79.77 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.02 Total: 2.10 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 4.19 Total: -1.49 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -2.03 Total: -78.28 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -1.01 Total: -51.58 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -83.97 4.20 -79.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385234539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.818 kcal (2) G-P(sol) polarization free energy of solvation -83.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds