Wall clock time and date at job start Mon Mar 30 2020 04:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.50534 * 2 1 4 4 C 1.53125 * 109.49973 * 239.88256 * 2 1 3 5 5 C 1.53114 * 109.16115 * 297.71502 * 4 2 1 6 6 H 1.08999 * 109.54051 * 62.30083 * 5 4 2 7 7 C 1.50696 * 109.50552 * 182.40819 * 5 4 2 8 8 O 1.20833 * 119.99655 * 359.79574 * 7 5 4 9 9 O 1.34222 * 120.00432 * 180.02562 * 7 5 4 10 10 C 1.53043 * 109.27920 * 302.34625 * 5 4 2 11 11 N 1.46849 * 109.52404 * 59.17512 * 10 5 4 12 12 C 1.46901 * 110.99817 * 174.16154 * 11 10 5 13 13 C 1.52996 * 109.47118 * 66.05229 * 12 11 10 14 14 C 1.50699 * 109.47357 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99565 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00503 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99403 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00391 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47041 * 60.00302 * 18 16 14 20 20 H 1.48501 * 109.47251 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47316 * 300.00515 * 18 16 14 22 22 C 1.46843 * 111.20233 * 298.26383 * 11 10 5 23 23 H 1.09009 * 109.46587 * 299.91692 * 1 2 3 24 24 H 1.08996 * 109.47081 * 59.91594 * 1 2 3 25 25 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.52025 * 177.80858 * 4 2 1 27 27 H 1.08998 * 109.51965 * 57.61751 * 4 2 1 28 28 H 0.96701 * 117.00458 * 179.72178 * 9 7 5 29 29 H 1.08996 * 109.46754 * 179.19851 * 10 5 4 30 30 H 1.08999 * 109.46085 * 299.17347 * 10 5 4 31 31 H 1.09001 * 109.46480 * 186.05217 * 12 11 10 32 32 H 1.09003 * 109.47310 * 306.04883 * 12 11 10 33 33 H 1.09001 * 109.46967 * 299.99653 * 13 12 11 34 34 H 1.09003 * 109.47312 * 59.99656 * 13 12 11 35 35 H 0.97000 * 119.99526 * 179.97438 * 17 16 14 36 36 H 1.08991 * 109.46346 * 181.75333 * 22 11 10 37 37 H 1.09001 * 109.46113 * 301.73621 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7243 -1.2486 5 6 1.5748 -2.1822 -1.2101 6 1 0.4856 -2.2172 -1.2293 7 6 2.1231 -2.9175 -2.4057 8 8 2.8128 -2.3352 -3.2090 9 8 1.8416 -4.2181 -2.5809 10 6 2.0845 -2.8420 0.0733 11 7 1.5676 -2.1130 1.2386 12 6 1.9224 -2.7988 2.4883 13 6 3.4400 -2.7596 2.6784 14 6 3.8039 -3.4626 3.9608 15 1 3.0302 -3.8945 4.5782 16 6 5.1247 -3.5553 4.3453 17 7 6.0669 -3.0298 3.5932 18 14 5.5759 -4.4272 5.9345 19 1 5.1210 -5.8394 5.8707 20 1 7.0489 -4.3891 6.1191 21 1 4.9165 -3.7460 7.0774 22 6 2.0410 -0.7230 1.2483 23 1 -0.3633 0.5126 0.8908 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1304 -0.6906 -1.2688 27 1 1.6441 -0.2382 -2.1397 28 1 2.2124 -4.6460 -3.3648 29 1 1.7422 -3.8762 0.1107 30 1 3.1742 -2.8195 0.0852 31 1 1.4380 -2.2988 3.3271 32 1 1.5887 -3.8354 2.4414 33 1 3.9242 -3.2596 1.8396 34 1 3.7737 -1.7230 2.7254 35 1 6.9961 -3.0947 3.8639 36 1 1.6670 -0.2183 2.1389 37 1 3.1309 -0.7106 1.2543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398761395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:17 Heat of formation + Delta-G solvation = -109.813042 kcal Electronic energy + Delta-G solvation = -18079.827761 eV Core-core repulsion = 15242.125990 eV Total energy + Delta-G solvation = -2837.701771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54904 -38.74862 -36.11777 -34.67973 -32.63508 -31.90795 -29.01420 -26.63125 -25.23205 -24.52020 -22.82194 -21.32419 -20.22063 -18.34526 -17.93783 -16.85696 -16.32329 -15.79217 -14.92143 -14.55631 -14.35578 -14.02238 -13.87605 -13.47451 -12.98497 -12.94048 -12.38286 -12.17332 -11.90414 -11.51292 -11.30017 -11.26636 -10.98569 -10.92002 -10.76834 -10.62275 -10.49591 -10.19542 -10.04010 -9.86489 -9.73643 -9.17631 -8.37810 -7.56443 -6.03997 -4.07250 2.24953 3.09476 3.30857 3.35524 3.37775 4.39726 4.50580 4.73080 4.94760 5.05282 5.25979 5.31312 5.46559 5.50297 5.55807 5.83104 5.87670 5.91379 6.03717 6.10451 6.19608 6.22003 6.33447 6.40092 6.42878 6.52461 6.60699 6.65200 6.87002 7.45431 7.48473 7.64620 7.79679 7.93831 7.96239 8.38303 8.99659 9.57218 11.07005 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.006080 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.015989 B = 4603.888968 C = 5126.218687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.099 4.099 5 C -0.077 4.077 6 H 0.116 0.884 7 C 0.486 3.514 8 O -0.520 6.520 9 O -0.514 6.514 10 C 0.064 3.936 11 N -0.535 5.535 12 C 0.058 3.942 13 C -0.010 4.010 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.053 3.947 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.406 0.594 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 2.682 -9.953 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.137 4.137 5 C -0.097 4.097 6 H 0.133 0.867 7 C 0.328 3.672 8 O -0.408 6.408 9 O -0.325 6.325 10 C -0.065 4.065 11 N -0.259 5.259 12 C -0.069 4.069 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.075 4.075 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.264 0.736 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.526 3.068 -9.859 14.745 hybrid contribution 1.636 -0.824 0.388 1.872 sum -8.890 2.244 -9.471 13.182 Atomic orbital electron populations 1.21774 0.94750 1.02622 1.00522 1.21209 0.96582 0.98719 0.94227 0.90704 1.21519 1.01691 0.92140 0.98308 1.21174 1.02878 0.94959 0.90641 0.86664 1.23652 0.76872 0.79869 0.86799 1.90696 1.36345 1.68285 1.45441 1.84578 1.72103 1.25771 1.50055 1.21934 0.98579 0.97732 0.88222 1.62293 1.58752 1.01919 1.02888 1.22334 0.98245 0.97541 0.88760 1.19672 0.90440 0.97489 0.97203 1.21116 0.92240 1.36039 1.06581 0.92603 1.25025 0.96651 0.95613 0.97079 1.69957 1.00318 1.45199 1.37928 0.86646 0.77228 0.80218 0.83847 1.20211 1.21317 1.20195 1.22136 0.98707 0.89411 0.97247 0.92925 0.93809 0.91283 0.91090 0.91355 0.73576 0.89881 0.93441 0.91637 0.91853 0.96633 0.96242 0.92933 0.90762 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.75 37.16 0.33 -1.28 16 2 C -0.09 -1.16 3.21 -90.53 -0.29 -1.45 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.10 -1.34 4.09 -26.61 -0.11 -1.45 16 5 C -0.08 -1.05 2.44 -91.69 -0.22 -1.28 16 6 H 0.12 1.40 6.58 -51.93 -0.34 1.06 16 7 C 0.49 6.79 7.63 36.00 0.27 7.06 16 8 O -0.52 -8.56 16.74 -18.76 -0.31 -8.87 16 9 O -0.51 -5.89 13.35 -39.24 -0.52 -6.41 16 10 C 0.06 1.04 4.26 -3.83 -0.02 1.03 16 11 N -0.54 -9.07 4.14 -234.67 -0.97 -10.04 16 12 C 0.06 1.16 5.30 -3.83 -0.02 1.14 16 13 C -0.01 -0.25 4.27 -27.89 -0.12 -0.37 16 14 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.05 0.86 4.27 -3.84 -0.02 0.85 16 23 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.84 6.01 -51.93 -0.31 0.53 16 26 H 0.07 1.08 8.05 -51.93 -0.42 0.67 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.41 2.84 9.10 45.56 0.41 3.25 16 29 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 30 H 0.05 0.90 6.75 -51.93 -0.35 0.55 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 33 H 0.02 0.42 6.68 -51.93 -0.35 0.07 16 34 H 0.02 0.52 6.51 -51.93 -0.34 0.18 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 37 H 0.05 0.88 6.61 -51.93 -0.34 0.54 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -31.49 294.45 -7.21 -38.70 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.95 Total: 0.75 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.61 Total: -9.02 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.24 Total: -36.11 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.84 Total: -15.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.49 -7.21 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398761395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.112 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds