Wall clock time and date at job start Mon Mar 30 2020 04:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.50534 * 2 1 4 4 C 1.53125 * 109.49973 * 239.88256 * 2 1 3 5 5 C 1.53114 * 109.16115 * 297.71502 * 4 2 1 6 6 H 1.08999 * 109.54051 * 62.30083 * 5 4 2 7 7 C 1.50696 * 109.50552 * 182.40819 * 5 4 2 8 8 O 1.20833 * 119.99655 * 359.79574 * 7 5 4 9 9 O 1.34222 * 120.00432 * 180.02562 * 7 5 4 10 10 C 1.53043 * 109.27920 * 302.34625 * 5 4 2 11 11 N 1.46849 * 109.52404 * 59.17512 * 10 5 4 12 12 C 1.46901 * 110.99817 * 174.16154 * 11 10 5 13 13 C 1.52996 * 109.47118 * 66.05229 * 12 11 10 14 14 C 1.50699 * 109.47357 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99565 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00503 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99403 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00391 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47041 * 60.00302 * 18 16 14 20 20 H 1.48501 * 109.47251 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47316 * 300.00515 * 18 16 14 22 22 C 1.46843 * 111.20233 * 298.26383 * 11 10 5 23 23 H 1.09009 * 109.46587 * 299.91692 * 1 2 3 24 24 H 1.08996 * 109.47081 * 59.91594 * 1 2 3 25 25 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.52025 * 177.80858 * 4 2 1 27 27 H 1.08998 * 109.51965 * 57.61751 * 4 2 1 28 28 H 0.96701 * 117.00458 * 179.72178 * 9 7 5 29 29 H 1.08996 * 109.46754 * 179.19851 * 10 5 4 30 30 H 1.08999 * 109.46085 * 299.17347 * 10 5 4 31 31 H 1.09001 * 109.46480 * 186.05217 * 12 11 10 32 32 H 1.09003 * 109.47310 * 306.04883 * 12 11 10 33 33 H 1.09001 * 109.46967 * 299.99653 * 13 12 11 34 34 H 1.09003 * 109.47312 * 59.99656 * 13 12 11 35 35 H 0.97000 * 119.99526 * 179.97438 * 17 16 14 36 36 H 1.08991 * 109.46346 * 181.75333 * 22 11 10 37 37 H 1.09001 * 109.46113 * 301.73621 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7243 -1.2486 5 6 1.5748 -2.1822 -1.2101 6 1 0.4856 -2.2172 -1.2293 7 6 2.1231 -2.9175 -2.4057 8 8 2.8128 -2.3352 -3.2090 9 8 1.8416 -4.2181 -2.5809 10 6 2.0845 -2.8420 0.0733 11 7 1.5676 -2.1130 1.2386 12 6 1.9224 -2.7988 2.4883 13 6 3.4400 -2.7596 2.6784 14 6 3.8039 -3.4626 3.9608 15 1 3.0302 -3.8945 4.5782 16 6 5.1247 -3.5553 4.3453 17 7 6.0669 -3.0298 3.5932 18 14 5.5759 -4.4272 5.9345 19 1 5.1210 -5.8394 5.8707 20 1 7.0489 -4.3891 6.1191 21 1 4.9165 -3.7460 7.0774 22 6 2.0410 -0.7230 1.2483 23 1 -0.3633 0.5126 0.8908 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1304 -0.6906 -1.2688 27 1 1.6441 -0.2382 -2.1397 28 1 2.2124 -4.6460 -3.3648 29 1 1.7422 -3.8762 0.1107 30 1 3.1742 -2.8195 0.0852 31 1 1.4380 -2.2988 3.3271 32 1 1.5887 -3.8354 2.4414 33 1 3.9242 -3.2596 1.8396 34 1 3.7737 -1.7230 2.7254 35 1 6.9961 -3.0947 3.8639 36 1 1.6670 -0.2183 2.1389 37 1 3.1309 -0.7106 1.2543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398761395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:17 Heat of formation + Delta-G solvation = -131.375276 kcal Electronic energy + Delta-G solvation = -18080.762769 eV Core-core repulsion = 15242.125990 eV Total energy + Delta-G solvation = -2838.636780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70246 -40.02341 -37.20123 -36.23514 -34.57564 -33.11478 -30.88508 -27.69486 -26.95420 -25.81064 -24.55722 -22.54155 -21.71620 -19.60648 -19.03216 -18.58964 -17.82225 -17.01702 -16.61357 -16.15140 -15.72801 -15.40168 -15.02776 -14.92392 -14.37989 -14.20953 -14.11907 -13.70552 -13.23453 -13.00423 -12.79092 -12.64339 -12.56490 -12.43923 -12.13359 -11.93266 -11.83250 -11.61120 -11.55740 -11.35631 -11.31739 -11.10817 -10.55533 -9.14383 -8.21915 -6.34209 1.12561 1.38815 1.41678 1.49556 2.09025 2.38985 3.08568 3.10913 3.58436 3.77090 3.92316 4.08626 4.27354 4.42633 4.43964 4.50842 4.61854 4.65588 4.80179 4.87146 4.90279 4.96250 5.01899 5.04005 5.17941 5.28940 5.34202 5.47404 5.55027 5.58208 5.66152 5.73626 5.99668 6.19637 6.31899 6.84025 6.96974 7.35568 8.88844 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.006080 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.015989 B = 4603.888968 C = 5126.218687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.088 0.912 4 C -0.097 4.097 5 C -0.070 4.070 6 H 0.142 0.858 7 C 0.491 3.509 8 O -0.548 6.548 9 O -0.508 6.508 10 C 0.067 3.933 11 N -0.518 5.518 12 C 0.071 3.929 13 C 0.000 4.000 14 C -0.541 4.541 15 H 0.065 0.935 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.052 3.948 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.427 0.573 29 H 0.088 0.912 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.069 0.931 33 H -0.015 1.015 34 H -0.007 1.007 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 2.388 -9.829 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 H 0.106 0.894 4 C -0.135 4.135 5 C -0.089 4.089 6 H 0.159 0.841 7 C 0.334 3.666 8 O -0.439 6.439 9 O -0.322 6.322 10 C -0.062 4.062 11 N -0.241 5.241 12 C -0.056 4.056 13 C -0.038 4.038 14 C -0.580 4.580 15 H 0.083 0.917 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.076 4.076 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.288 0.712 29 H 0.106 0.894 30 H 0.028 0.972 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.004 0.996 34 H 0.011 0.989 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -12.462 2.755 -9.749 16.061 hybrid contribution 2.254 -0.756 0.307 2.397 sum -10.209 2.000 -9.442 14.049 Atomic orbital electron populations 1.21726 0.92672 1.02753 1.01883 1.21187 0.98122 0.98719 0.91934 0.89365 1.21505 1.00177 0.92452 0.99346 1.21127 1.04206 0.94652 0.88931 0.84071 1.23598 0.76161 0.80446 0.86364 1.90692 1.37552 1.69086 1.46524 1.84526 1.71811 1.24526 1.51295 1.21894 0.96366 0.98467 0.89428 1.62349 1.57768 1.02082 1.01852 1.22110 0.94410 0.98480 0.90646 1.19534 0.93866 0.95098 0.95311 1.21619 0.92788 1.36039 1.07539 0.91697 1.25999 0.96650 0.96367 1.00841 1.70111 1.00683 1.46712 1.40041 0.85496 0.76876 0.79315 0.79356 1.19052 1.21168 1.18956 1.22194 0.96551 0.89370 0.99476 0.92473 0.91599 0.91710 0.93718 0.89441 0.71180 0.89370 0.97185 0.90970 0.91234 0.99631 0.98883 0.92926 0.90459 0.97259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.75 71.98 0.63 -2.03 16 2 C -0.08 -2.01 3.21 -10.74 -0.03 -2.04 16 3 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.10 -2.55 4.09 30.67 0.13 -2.42 16 5 C -0.07 -1.83 2.44 -11.49 -0.03 -1.86 16 6 H 0.14 3.01 6.58 -2.39 -0.02 2.99 16 7 C 0.49 13.19 7.63 71.23 0.54 13.73 16 8 O -0.55 -17.75 16.74 21.94 0.37 -17.38 16 9 O -0.51 -10.75 13.35 -51.34 -0.69 -11.44 16 10 C 0.07 2.20 4.26 86.33 0.37 2.57 16 11 N -0.52 -17.45 4.14 -896.37 -3.71 -21.17 16 12 C 0.07 2.87 5.30 86.30 0.46 3.32 16 13 C 0.00 0.01 4.27 29.85 0.13 0.14 16 14 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 15 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 17 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 18 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 C 0.05 1.72 4.27 86.33 0.37 2.08 16 23 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.36 6.01 -2.39 -0.01 1.35 16 26 H 0.04 1.40 8.05 -2.39 -0.02 1.38 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.43 5.16 9.10 -74.06 -0.67 4.48 16 29 H 0.09 2.78 8.06 -2.39 -0.02 2.76 16 30 H 0.01 0.40 6.75 -2.39 -0.02 0.38 16 31 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.07 2.72 8.06 -2.39 -0.02 2.70 16 33 H -0.01 -0.84 6.68 -2.39 -0.02 -0.86 16 34 H -0.01 -0.41 6.51 -2.39 -0.02 -0.42 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 37 H 0.01 0.37 6.61 -2.39 -0.02 0.35 16 Total: -1.00 -69.05 294.45 1.92 -67.13 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.39 Total: 10.32 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 3.25 Total: -16.41 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -3.43 Total: -78.50 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.32 Total: -28.82 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.05 1.92 -67.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398761395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.242 kcal (2) G-P(sol) polarization free energy of solvation -69.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds