Wall clock time and date at job start Mon Mar 30 2020 04:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.43564 * 2 1 4 4 C 1.54625 * 110.48807 * 237.45728 * 2 1 3 5 5 C 1.54482 * 101.76594 * 266.11928 * 4 2 1 6 6 H 1.09004 * 110.24568 * 93.66371 * 5 4 2 7 7 C 1.52997 * 110.24937 * 215.58188 * 5 4 2 8 8 N 1.46772 * 105.47169 * 334.58417 * 5 4 2 9 9 C 1.46503 * 124.34675 * 197.03412 * 8 5 4 10 10 C 1.52999 * 109.46852 * 90.00024 * 9 8 5 11 11 O 1.42908 * 109.47364 * 64.99414 * 10 9 8 12 12 C 1.42901 * 114.00122 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99842 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00225 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99590 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00156 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47088 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47010 * 119.99843 * 17 15 13 20 20 H 1.48504 * 109.47076 * 239.99758 * 17 15 13 21 21 C 1.34415 * 111.30087 * 17.01346 * 8 5 4 22 22 O 1.21284 * 124.94360 * 179.59475 * 21 8 5 23 23 H 1.09000 * 109.47256 * 182.54395 * 1 2 3 24 24 H 1.09004 * 109.47218 * 302.54602 * 1 2 3 25 25 H 1.09001 * 109.47338 * 62.54003 * 1 2 3 26 26 H 1.09003 * 110.97561 * 148.00182 * 4 2 1 27 27 H 1.09000 * 110.97012 * 24.23367 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99784 * 7 5 4 29 29 H 1.09001 * 109.46832 * 299.99975 * 7 5 4 30 30 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.46877 * 209.99308 * 9 8 5 32 32 H 1.08993 * 109.47167 * 329.99919 * 9 8 5 33 33 H 1.08991 * 109.47148 * 184.99939 * 10 9 8 34 34 H 1.09006 * 109.47298 * 304.99766 * 10 9 8 35 35 H 1.09000 * 109.47326 * 300.00553 * 12 11 10 36 36 H 1.08997 * 109.46624 * 60.00452 * 12 11 10 37 37 H 0.96998 * 119.99715 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0712 -0.7792 -1.2210 5 6 2.2773 -2.1906 -0.6279 6 1 1.3953 -2.8064 -0.8043 7 6 3.5135 -2.8486 -1.2441 8 7 2.4757 -1.9852 0.8118 9 6 3.0535 -2.9817 1.7170 10 6 4.5714 -2.7985 1.7751 11 8 4.8763 -1.5319 2.3626 12 6 6.2755 -1.2603 2.4648 13 6 6.4797 0.0930 3.0955 14 1 5.6263 0.6866 3.3885 15 6 7.7560 0.5740 3.2974 16 7 8.7952 -0.1487 2.9401 17 14 8.0092 2.2518 4.0785 18 1 6.6892 2.8588 4.3861 19 1 8.7897 2.1012 5.3328 20 1 8.7498 3.1294 3.1369 21 6 2.0595 -0.7652 1.1928 22 8 2.1022 -0.3398 2.3278 23 1 -0.3634 -1.0266 0.0456 24 1 -0.3634 0.5529 0.8663 25 1 -0.3634 0.4739 -0.9119 26 1 3.0163 -0.3586 -1.5646 27 1 1.3383 -0.7983 -2.0276 28 1 4.3928 -2.2407 -1.0313 29 1 3.3813 -2.9312 -2.3229 30 1 3.6472 -3.8425 -0.8169 31 1 2.6336 -2.8529 2.7146 32 1 2.8220 -3.9820 1.3516 33 1 5.0105 -3.5936 2.3774 34 1 4.9811 -2.8388 0.7657 35 1 6.7497 -2.0236 3.0818 36 1 6.7208 -1.2689 1.4700 37 1 9.6931 0.1895 3.0826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399531478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:55 Heat of formation + Delta-G solvation = -90.836373 kcal Electronic energy + Delta-G solvation = -18107.444844 eV Core-core repulsion = 15270.565963 eV Total energy + Delta-G solvation = -2836.878881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40514 -36.74776 -36.28677 -33.85561 -32.57086 -31.09650 -29.26724 -27.08893 -26.32535 -23.90043 -22.45639 -22.06510 -20.77047 -19.06113 -16.46068 -16.24405 -16.06841 -15.58263 -14.98731 -14.55573 -14.34744 -13.93475 -13.61053 -13.44953 -13.18574 -12.74072 -12.49242 -12.18194 -12.04078 -11.97839 -11.93609 -11.67494 -11.09154 -10.87464 -10.76511 -10.72189 -10.63354 -10.50167 -10.00571 -9.22426 -9.00326 -8.74714 -8.34902 -8.09038 -6.04866 -4.04971 3.06250 3.31576 3.33800 3.39906 3.49279 4.39171 4.43310 4.47796 4.75662 4.88507 5.02074 5.20116 5.24180 5.31697 5.37967 5.52018 5.57363 5.58488 5.67711 5.70681 5.83173 5.90222 5.94205 6.00638 6.06079 6.13112 6.24097 6.34505 6.91902 7.14163 7.47623 7.53931 7.89097 8.23175 8.66077 8.68580 9.11207 9.59810 11.06952 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026672 B = 0.006423 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.546259 B = 4358.104995 C = 4803.157556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 H 0.104 0.896 4 C -0.125 4.125 5 C 0.131 3.869 6 H 0.074 0.926 7 C -0.163 4.163 8 N -0.612 5.612 9 C 0.132 3.868 10 C 0.039 3.961 11 O -0.380 6.380 12 C 0.196 3.804 13 C -0.507 4.507 14 H 0.068 0.932 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.525 3.475 22 O -0.507 6.507 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.003 0.997 36 H 0.001 0.999 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 -5.915 -11.168 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.151 4.151 3 H 0.122 0.878 4 C -0.163 4.163 5 C 0.027 3.973 6 H 0.092 0.908 7 C -0.221 4.221 8 N -0.347 5.347 9 C 0.010 3.990 10 C -0.040 4.040 11 O -0.299 6.299 12 C 0.121 3.879 13 C -0.546 4.546 14 H 0.086 0.914 15 C -0.146 4.146 16 N -0.542 5.542 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.311 3.689 22 O -0.381 6.381 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.478 -5.600 -10.420 18.697 hybrid contribution 0.761 0.493 0.203 0.929 sum -13.718 -5.107 -10.217 17.850 Atomic orbital electron populations 1.21605 0.92575 1.02170 1.02532 1.21961 0.97522 1.01195 0.94380 0.87809 1.22766 1.02474 0.94078 0.96967 1.21601 0.98121 0.96896 0.80650 0.90787 1.22213 0.98116 1.01163 1.00580 1.48187 1.62473 1.15831 1.08238 1.21380 0.92888 0.90358 0.94339 1.22811 0.94553 0.89295 0.97304 1.88015 1.27909 1.32589 1.81401 1.20166 0.75983 0.96423 0.95304 1.21135 0.92541 1.01575 1.39311 0.91419 1.24942 0.95494 0.98247 0.95910 1.69981 0.98282 1.37745 1.48173 0.86305 0.78342 0.83251 0.78807 1.19383 1.20843 1.20900 1.20583 0.77025 0.81748 0.89541 1.90752 1.54564 1.70812 1.21939 0.92547 0.91822 0.91677 0.89757 0.89562 0.91215 0.91465 0.92165 0.89632 0.90042 0.93933 0.94072 0.97960 0.98140 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.17 37.16 0.34 -1.00 16 2 C -0.13 -1.68 3.53 -90.63 -0.32 -2.00 16 3 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.13 -1.28 6.22 -25.10 -0.16 -1.44 16 5 C 0.13 1.45 3.91 -67.01 -0.26 1.19 16 6 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.16 -1.69 7.85 37.16 0.29 -1.40 16 8 N -0.61 -9.43 2.76 -164.88 -0.46 -9.89 16 9 C 0.13 2.06 5.65 -4.04 -0.02 2.04 16 10 C 0.04 0.75 6.17 37.16 0.23 0.98 16 11 O -0.38 -9.82 9.89 -35.23 -0.35 -10.17 16 12 C 0.20 5.65 5.69 36.00 0.20 5.86 16 13 C -0.51 -15.85 9.43 -34.44 -0.32 -16.18 16 14 H 0.07 2.17 7.81 -52.48 -0.41 1.76 16 15 C 0.05 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.88 13.29 55.43 0.74 -27.14 16 17 Si 0.91 22.94 29.54 -169.99 -5.02 17.92 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.52 9.48 7.05 -10.86 -0.08 9.41 16 22 O -0.51 -11.84 17.49 5.55 0.10 -11.74 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 27 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 28 H 0.07 0.92 7.12 -51.93 -0.37 0.55 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 7.62 -51.93 -0.40 0.19 16 31 H 0.09 1.47 7.92 -51.93 -0.41 1.06 16 32 H 0.08 0.93 7.94 -51.93 -0.41 0.51 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.74 5.84 -51.93 -0.30 0.44 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 36 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -36.45 306.09 -6.63 -43.08 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -6.06 Total: -5.66 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.19 Total: -1.01 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.28 Total: -37.03 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.25 Total: -21.91 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.45 -6.63 -43.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399531478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.755 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds