Wall clock time and date at job start Mon Mar 30 2020 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 O 1.21282 * 119.99865 * 240.00203 * 4 2 1 6 6 N 1.34774 * 120.00164 * 59.99708 * 4 2 1 7 7 C 1.46496 * 120.00339 * 180.02562 * 6 4 2 8 8 C 1.50697 * 109.47353 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00039 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99815 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00246 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99867 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47320 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47432 * 120.00032 * 12 10 8 15 15 H 1.48500 * 109.47172 * 239.99750 * 12 10 8 16 16 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 17 17 C 1.53175 * 109.54647 * 299.55862 * 16 2 1 18 18 C 1.53093 * 109.16556 * 183.14951 * 17 16 2 19 19 O 1.42899 * 109.41266 * 57.61269 * 18 17 16 20 20 C 1.42910 * 114.09353 * 298.83472 * 19 18 17 21 21 C 1.53089 * 109.41296 * 61.16559 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97005 * 119.99795 * 359.97438 * 6 4 2 26 26 H 1.08996 * 109.46956 * 300.00500 * 7 6 4 27 27 H 1.09001 * 109.47062 * 59.99678 * 7 6 4 28 28 H 0.97001 * 120.00170 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.54357 * 59.82610 * 16 2 1 30 30 H 1.09007 * 109.52169 * 303.05774 * 17 16 2 31 31 H 1.09005 * 109.52314 * 63.24277 * 17 16 2 32 32 H 1.08997 * 109.48204 * 297.62115 * 18 17 16 33 33 H 1.09001 * 109.47668 * 177.58781 * 18 17 16 34 34 H 1.08993 * 109.48274 * 301.18077 * 20 19 18 35 35 H 1.09005 * 109.47689 * 181.14658 * 20 19 18 36 36 H 1.08999 * 109.51995 * 182.48279 * 21 20 19 37 37 H 1.09004 * 109.52639 * 62.29575 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 6 1.6918 -0.2305 -4.8812 9 1 1.0713 0.6479 -4.7821 10 6 2.0249 -0.7015 -6.1335 11 7 2.7810 -1.7708 -6.2543 12 14 1.4023 0.1792 -7.6587 13 1 0.5768 1.3456 -7.2545 14 1 2.5573 0.6459 -8.4670 15 1 0.5773 -0.7541 -8.4671 16 6 2.0400 -0.7212 1.2491 17 6 1.5395 0.0058 2.5010 18 6 2.1188 -0.6758 3.7434 19 8 3.5457 -0.6696 3.6668 20 6 4.0726 -1.3757 2.5415 21 6 3.5718 -0.7222 1.2508 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.1487 0.5386 -2.5436 26 1 3.2846 -0.9411 -3.6510 27 1 1.8310 -1.9682 -3.6507 28 1 3.0150 -2.1024 -7.1353 29 1 1.6748 -1.7483 1.2519 30 1 1.8634 1.0463 2.4719 31 1 0.4509 -0.0369 2.5363 32 1 1.7618 -1.7044 3.7935 33 1 1.8004 -0.1364 4.6355 34 1 3.7411 -2.4134 2.5758 35 1 5.1617 -1.3407 2.5679 36 1 3.9367 -1.2857 0.3920 37 1 3.9368 0.3035 1.1964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408371011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:26 Heat of formation + Delta-G solvation = -111.096500 kcal Electronic energy + Delta-G solvation = -17718.349522 eV Core-core repulsion = 14880.592096 eV Total energy + Delta-G solvation = -2837.757426 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97912 -38.45903 -35.13022 -34.18936 -32.44298 -31.07298 -30.76921 -27.21414 -25.49229 -23.82502 -23.05936 -21.76354 -20.05809 -19.33593 -17.12342 -16.27327 -15.95579 -15.69995 -15.17009 -15.02875 -14.50314 -14.28425 -13.92576 -13.51742 -13.34478 -12.90982 -12.35269 -12.13561 -11.86852 -11.75242 -11.60142 -11.41062 -11.19302 -10.95609 -10.91321 -10.70764 -10.45595 -10.29873 -10.16325 -9.49639 -9.39022 -8.80335 -8.73315 -7.87074 -6.18362 -4.25191 3.22069 3.29297 3.32258 3.37274 3.90573 4.05672 4.34886 4.68055 4.86250 4.88748 5.06408 5.17907 5.22246 5.31684 5.34184 5.41824 5.53354 5.58020 5.70914 5.74569 5.86150 5.92492 5.96274 6.03662 6.10994 6.27917 6.49689 6.55618 7.22681 7.29994 7.45479 7.50475 7.65763 7.95847 8.63064 8.77215 9.11014 9.41842 10.91894 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051696 B = 0.004614 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.496641 B = 6067.117266 C = 6431.549031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.090 0.910 4 C 0.502 3.498 5 O -0.554 6.554 6 N -0.711 5.711 7 C 0.249 3.751 8 C -0.543 4.543 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.065 4.065 17 C -0.153 4.153 18 C 0.062 3.938 19 O -0.390 6.390 20 C 0.063 3.937 21 C -0.162 4.162 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.390 0.610 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 4.350 16.126 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.108 0.892 4 C 0.287 3.713 5 O -0.434 6.434 6 N -0.359 5.359 7 C 0.128 3.872 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.084 4.084 17 C -0.190 4.190 18 C -0.015 4.015 19 O -0.309 6.309 20 C -0.014 4.014 21 C -0.199 4.199 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.222 0.778 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.918 3.605 16.154 16.807 hybrid contribution -0.764 0.695 -1.286 1.650 sum -3.683 4.300 14.867 15.909 Atomic orbital electron populations 1.21803 0.93398 1.02644 1.02295 1.21361 0.97144 1.00621 0.93823 0.89153 1.20430 0.80968 0.85003 0.84883 1.90568 1.39024 1.27048 1.86733 1.46487 1.51625 1.31140 1.06658 1.19095 0.95257 0.92851 0.79980 1.21268 1.33100 1.13121 0.90615 0.91898 1.24953 0.94830 0.94978 0.99250 1.69984 1.35760 1.22490 1.24077 0.86369 0.78639 0.79504 0.82449 1.19635 1.20779 1.20792 1.20917 0.95765 0.99546 0.92155 1.22328 1.00918 1.00619 0.95170 1.22527 0.81399 0.99743 0.97795 1.87885 1.20279 1.75997 1.46694 1.22607 0.98686 0.94772 0.85311 1.22488 0.95486 1.02232 0.99720 0.91782 0.92181 0.91932 0.77772 0.95597 0.95612 0.92505 0.90567 0.91113 0.90755 0.93406 0.89297 0.93272 0.89142 0.87572 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.75 37.16 0.33 -1.36 16 2 C -0.11 -1.51 2.32 -91.77 -0.21 -1.72 16 3 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.50 9.74 6.87 -10.98 -0.08 9.66 16 5 O -0.55 -12.69 13.67 5.56 0.08 -12.61 16 6 N -0.71 -14.81 5.44 -61.48 -0.33 -15.15 16 7 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16 8 C -0.54 -14.69 9.28 -34.44 -0.32 -15.00 16 9 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 12 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.06 -0.86 1.49 -90.44 -0.14 -1.00 16 17 C -0.15 -1.60 4.98 -26.59 -0.13 -1.73 16 18 C 0.06 0.65 6.84 37.21 0.25 0.91 16 19 O -0.39 -5.09 10.77 -35.23 -0.38 -5.47 16 20 C 0.06 0.80 6.84 37.20 0.25 1.06 16 21 C -0.16 -2.32 5.05 -26.59 -0.13 -2.45 16 22 H 0.06 0.59 6.52 -51.93 -0.34 0.26 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 25 H 0.39 7.03 7.74 -40.82 -0.32 6.72 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.07 0.66 6.63 -51.93 -0.34 0.31 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.11 1.84 5.61 -51.93 -0.29 1.55 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -31.20 296.83 -6.61 -37.81 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.86 Total: 3.95 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.30 Total: -3.45 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.40 Total: -40.46 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.30 Total: -18.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.20 -6.61 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408371011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.284 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds