Wall clock time and date at job start Mon Mar 30 2020 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 O 1.21282 * 119.99865 * 240.00203 * 4 2 1 6 6 N 1.34774 * 120.00164 * 59.99708 * 4 2 1 7 7 C 1.46496 * 120.00339 * 180.02562 * 6 4 2 8 8 C 1.50697 * 109.47353 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00039 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99815 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00246 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99867 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47320 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47432 * 120.00032 * 12 10 8 15 15 H 1.48500 * 109.47172 * 239.99750 * 12 10 8 16 16 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 17 17 C 1.53175 * 109.54647 * 299.55862 * 16 2 1 18 18 C 1.53093 * 109.16556 * 183.14951 * 17 16 2 19 19 O 1.42899 * 109.41266 * 57.61269 * 18 17 16 20 20 C 1.42910 * 114.09353 * 298.83472 * 19 18 17 21 21 C 1.53089 * 109.41296 * 61.16559 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97005 * 119.99795 * 359.97438 * 6 4 2 26 26 H 1.08996 * 109.46956 * 300.00500 * 7 6 4 27 27 H 1.09001 * 109.47062 * 59.99678 * 7 6 4 28 28 H 0.97001 * 120.00170 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.54357 * 59.82610 * 16 2 1 30 30 H 1.09007 * 109.52169 * 303.05774 * 17 16 2 31 31 H 1.09005 * 109.52314 * 63.24277 * 17 16 2 32 32 H 1.08997 * 109.48204 * 297.62115 * 18 17 16 33 33 H 1.09001 * 109.47668 * 177.58781 * 18 17 16 34 34 H 1.08993 * 109.48274 * 301.18077 * 20 19 18 35 35 H 1.09005 * 109.47689 * 181.14658 * 20 19 18 36 36 H 1.08999 * 109.51995 * 182.48279 * 21 20 19 37 37 H 1.09004 * 109.52639 * 62.29575 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 6 1.6918 -0.2305 -4.8812 9 1 1.0713 0.6479 -4.7821 10 6 2.0249 -0.7015 -6.1335 11 7 2.7810 -1.7708 -6.2543 12 14 1.4023 0.1792 -7.6587 13 1 0.5768 1.3456 -7.2545 14 1 2.5573 0.6459 -8.4670 15 1 0.5773 -0.7541 -8.4671 16 6 2.0400 -0.7212 1.2491 17 6 1.5395 0.0058 2.5010 18 6 2.1188 -0.6758 3.7434 19 8 3.5457 -0.6696 3.6668 20 6 4.0726 -1.3757 2.5415 21 6 3.5718 -0.7222 1.2508 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.1487 0.5386 -2.5436 26 1 3.2846 -0.9411 -3.6510 27 1 1.8310 -1.9682 -3.6507 28 1 3.0150 -2.1024 -7.1353 29 1 1.6748 -1.7483 1.2519 30 1 1.8634 1.0463 2.4719 31 1 0.4509 -0.0369 2.5363 32 1 1.7618 -1.7044 3.7935 33 1 1.8004 -0.1364 4.6355 34 1 3.7411 -2.4134 2.5758 35 1 5.1617 -1.3407 2.5679 36 1 3.9367 -1.2857 0.3920 37 1 3.9368 0.3035 1.1964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408371011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:26 Heat of formation + Delta-G solvation = -133.281474 kcal Electronic energy + Delta-G solvation = -17719.311535 eV Core-core repulsion = 14880.592096 eV Total energy + Delta-G solvation = -2838.719439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27641 -39.74556 -36.43859 -35.97574 -34.40461 -32.17646 -31.80358 -29.18823 -26.53822 -25.29285 -24.32611 -23.26535 -21.25799 -20.80369 -18.87498 -17.59949 -17.31617 -16.90380 -16.79687 -16.37837 -16.15613 -15.53080 -15.16148 -14.84933 -14.54441 -14.16462 -14.01364 -13.89892 -13.21235 -13.10204 -12.82806 -12.75887 -12.62378 -12.41616 -12.23719 -12.17552 -11.77953 -11.53583 -11.46123 -11.14042 -10.82056 -10.56752 -10.27726 -9.78482 -8.30594 -6.47217 1.42331 1.43296 1.56847 1.79904 2.31827 2.60332 3.00121 3.04483 3.61099 3.79017 3.82304 4.12978 4.15786 4.26653 4.36367 4.43851 4.46343 4.66076 4.75695 4.80597 4.90182 4.96767 4.98976 5.04464 5.12712 5.14061 5.23206 5.28759 5.38983 5.46473 5.52184 5.71447 5.84892 6.29219 6.64579 6.93137 7.22693 7.52202 8.81842 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051696 B = 0.004614 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.496641 B = 6067.117266 C = 6431.549031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.112 0.888 4 C 0.495 3.505 5 O -0.594 6.594 6 N -0.708 5.708 7 C 0.266 3.734 8 C -0.555 4.555 9 H 0.083 0.917 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.253 1.253 14 H -0.279 1.279 15 H -0.279 1.279 16 C -0.065 4.065 17 C -0.143 4.143 18 C 0.054 3.946 19 O -0.401 6.401 20 C 0.067 3.933 21 C -0.161 4.161 22 H 0.100 0.900 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.406 0.594 26 H -0.015 1.015 27 H -0.014 1.014 28 H 0.268 0.732 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.047 0.953 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 6.704 17.110 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.130 0.870 4 C 0.283 3.717 5 O -0.476 6.476 6 N -0.358 5.358 7 C 0.144 3.856 8 C -0.593 4.593 9 H 0.101 0.899 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.808 3.192 13 H -0.176 1.176 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.084 4.084 17 C -0.180 4.180 18 C -0.022 4.022 19 O -0.321 6.321 20 C -0.010 4.010 21 C -0.199 4.199 22 H 0.119 0.881 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.242 0.758 26 H 0.003 0.997 27 H 0.004 0.996 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.902 5.990 17.177 18.840 hybrid contribution -0.112 -0.097 -1.526 1.533 sum -5.013 5.893 15.652 17.459 Atomic orbital electron populations 1.21838 0.90968 1.02632 1.04347 1.21383 0.98936 1.00694 0.90600 0.86963 1.21561 0.79714 0.84536 0.85871 1.90565 1.40568 1.29092 1.87385 1.46244 1.52181 1.31567 1.05765 1.18512 0.92753 0.91646 0.82737 1.21653 1.33198 1.13639 0.90809 0.89885 1.26067 0.94719 0.95612 1.03183 1.70145 1.37271 1.24445 1.25174 0.85114 0.78125 0.78567 0.77427 1.17590 1.20467 1.20433 1.20931 0.94836 0.99140 0.93487 1.22287 1.02347 1.00343 0.93026 1.22791 0.80017 1.00542 0.98893 1.87872 1.22010 1.75930 1.46265 1.22529 0.99222 0.94508 0.84711 1.22399 0.96657 1.01747 0.99093 0.88116 0.93257 0.91518 0.75819 0.99671 0.99648 0.92266 0.92281 0.90307 0.88219 0.93068 0.86686 0.93448 0.88435 0.91333 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.75 71.98 0.63 -2.24 16 2 C -0.09 -2.50 2.32 -11.54 -0.03 -2.53 16 3 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.50 19.59 6.87 87.66 0.60 20.20 16 5 O -0.59 -28.77 13.67 -3.04 -0.04 -28.81 16 6 N -0.71 -29.98 5.44 -466.80 -2.54 -32.52 16 7 C 0.27 14.73 5.43 85.63 0.46 15.20 16 8 C -0.56 -30.30 9.28 25.60 0.24 -30.06 16 9 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 10 C 0.00 0.20 5.46 84.66 0.46 0.67 16 11 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 12 Si 0.98 42.30 29.54 68.60 2.03 44.33 16 13 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 16 C -0.06 -1.65 1.49 -10.68 -0.02 -1.66 16 17 C -0.14 -2.49 4.98 30.68 0.15 -2.34 16 18 C 0.05 0.97 6.84 72.01 0.49 1.46 16 19 O -0.40 -9.77 10.77 -148.98 -1.60 -11.37 16 20 C 0.07 1.69 6.84 72.01 0.49 2.18 16 21 C -0.16 -4.66 5.05 30.68 0.15 -4.50 16 22 H 0.10 1.37 6.52 -2.39 -0.02 1.35 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.33 7.56 -2.38 -0.02 1.31 16 25 H 0.41 14.29 7.74 -92.70 -0.72 13.57 16 26 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.10 1.28 6.63 -2.38 -0.02 1.26 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.07 2.52 5.61 -2.39 -0.01 2.51 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -70.98 296.83 2.11 -68.87 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.33 Total: 19.29 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 3.65 Total: -3.63 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -2.25 Total: -88.68 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.65 Total: -40.18 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -70.98 2.11 -68.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408371011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.412 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds