Wall clock time and date at job start Mon Mar 30 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00437 * 2 1 4 4 O 1.20832 * 119.99526 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00892 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.90078 * 62.41175 * 5 3 2 7 7 C 1.55140 * 110.99144 * 298.55132 * 5 3 2 8 8 C 1.54316 * 103.02147 * 206.25113 * 7 5 3 9 9 N 1.47441 * 107.23198 * 22.27800 * 8 7 5 10 10 C 1.46907 * 110.99905 * 123.25887 * 9 8 7 11 11 H 1.08993 * 109.46971 * 303.24361 * 10 9 8 12 12 C 1.53002 * 109.47060 * 183.24971 * 10 9 8 13 13 C 1.53000 * 109.47026 * 63.24682 * 10 9 8 14 14 C 1.50691 * 109.47021 * 185.64184 * 13 10 9 15 15 H 1.08001 * 120.00475 * 355.59088 * 14 13 10 16 16 C 1.37881 * 119.99873 * 175.86118 * 14 13 10 17 17 N 1.31511 * 120.00162 * 359.72578 * 16 14 13 18 18 Si 1.86806 * 119.99959 * 179.72793 * 16 14 13 19 19 H 1.48490 * 109.47240 * 90.00002 * 18 16 14 20 20 H 1.48500 * 109.46858 * 210.00084 * 18 16 14 21 21 H 1.48501 * 109.47138 * 329.99782 * 18 16 14 22 22 C 1.47843 * 108.56698 * 0.99192 * 9 8 7 23 23 H 1.08992 * 109.47148 * 60.00293 * 1 2 3 24 24 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46890 * 299.99785 * 1 2 3 26 26 H 1.08998 * 110.70903 * 87.86193 * 7 5 3 27 27 H 1.09005 * 110.85502 * 324.70367 * 7 5 3 28 28 H 1.09003 * 109.88858 * 262.87477 * 8 7 5 29 29 H 1.08998 * 110.02594 * 141.75678 * 8 7 5 30 30 H 1.08995 * 109.47569 * 59.99803 * 12 10 9 31 31 H 1.09003 * 109.47157 * 180.02562 * 12 10 9 32 32 H 1.09007 * 109.46940 * 299.99558 * 12 10 9 33 33 H 1.09007 * 109.46755 * 65.64228 * 13 10 9 34 34 H 1.09001 * 109.46987 * 305.64672 * 13 10 9 35 35 H 0.97001 * 120.00171 * 179.97438 * 17 16 14 36 36 H 1.09007 * 110.37296 * 94.73564 * 22 9 8 37 37 H 1.09006 * 110.37662 * 217.06934 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9797 0.8241 -0.9017 7 6 4.1571 0.6129 1.2732 8 6 5.5040 1.3444 1.4523 9 7 5.3988 2.6331 0.7437 10 6 5.6699 3.7564 1.6509 11 1 4.9848 3.7131 2.4975 12 6 5.4724 5.0759 0.9020 13 6 7.1113 3.6674 2.1562 14 6 7.3476 4.7367 3.1913 15 1 6.5731 5.4568 3.4105 16 6 8.5547 4.7992 3.8547 17 7 9.4979 3.9224 3.5880 18 14 8.8505 6.1294 5.1325 19 1 8.4252 5.6370 6.4672 20 1 10.2956 6.4694 5.1677 21 1 8.0659 7.3394 4.7781 22 6 4.0452 2.7395 0.1586 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.3158 -0.4537 1.1146 27 1 3.5099 0.7809 2.1341 28 1 6.3093 0.7492 1.0218 29 1 5.6966 1.5181 2.5110 30 1 4.4456 5.1393 0.5421 31 1 5.6740 5.9093 1.5750 32 1 6.1576 5.1192 0.0553 33 1 7.7982 3.8110 1.3220 34 1 7.2804 2.6869 2.6013 35 1 10.3472 3.9666 4.0544 36 1 3.3829 3.2848 0.8310 37 1 4.0894 3.2313 -0.8132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411177884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:32 Heat of formation + Delta-G solvation = -90.876354 kcal Electronic energy + Delta-G solvation = -17694.192889 eV Core-core repulsion = 14857.312274 eV Total energy + Delta-G solvation = -2836.880615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73613 -38.66729 -36.54461 -34.39790 -32.28227 -29.75188 -28.97890 -27.68061 -26.58382 -24.00485 -22.40613 -21.42102 -20.12509 -19.11398 -17.59775 -16.85351 -16.66987 -16.27629 -15.46748 -14.61035 -14.47757 -13.72818 -13.53034 -13.28121 -13.22433 -12.93787 -12.35737 -12.03794 -11.91051 -11.61098 -11.45812 -11.20199 -10.97143 -10.93720 -10.86863 -10.75770 -10.51659 -10.39373 -10.32819 -9.91828 -9.19339 -9.07877 -8.32874 -7.72836 -5.98211 -3.99800 2.10082 2.56660 3.32809 3.39373 3.42592 4.30444 4.46233 4.61567 4.74638 4.85538 4.89969 4.97236 5.14473 5.32041 5.37763 5.48029 5.53387 5.82265 5.95068 6.01710 6.09370 6.10898 6.22487 6.28394 6.34562 6.44172 6.69571 6.93138 7.11926 7.51104 7.51639 7.64240 7.78868 7.88981 8.09773 8.45677 9.06636 9.63474 11.13158 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046871 B = 0.004713 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.238944 B = 5939.599583 C = 6103.232319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.506 6.506 5 C -0.096 4.096 6 H 0.121 0.879 7 C -0.127 4.127 8 C 0.044 3.956 9 N -0.524 5.524 10 C 0.080 3.920 11 H 0.029 0.971 12 C -0.133 4.133 13 C 0.033 3.967 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.062 3.938 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.260 0.740 36 H 0.056 0.944 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -8.461 -6.956 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.314 3.686 4 O -0.393 6.393 5 C -0.115 4.115 6 H 0.139 0.861 7 C -0.165 4.165 8 C -0.084 4.084 9 N -0.249 5.249 10 C -0.027 4.027 11 H 0.047 0.953 12 C -0.191 4.191 13 C -0.004 4.004 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.066 4.066 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.820 -8.168 -7.292 17.632 hybrid contribution -0.610 0.708 1.374 1.662 sum -14.431 -7.460 -5.918 17.289 Atomic orbital electron populations 1.23251 0.76638 1.03551 1.02513 1.86526 1.23193 1.33626 1.84134 1.23705 0.91845 0.81188 0.71816 1.90671 1.67149 1.36374 1.45089 1.22284 0.86282 1.00529 1.02454 0.86078 1.22800 0.97786 1.00731 0.95206 1.22825 0.95516 0.90578 0.99507 1.63791 1.24167 1.02672 1.34283 1.22069 1.00656 0.88652 0.91335 0.95252 1.21783 0.99088 0.97604 1.00620 1.19148 0.88350 0.97241 0.95662 1.21216 0.99532 1.13878 1.21041 0.92663 1.24983 0.96212 0.95997 0.97094 1.69968 1.05358 1.35649 1.42310 0.86630 0.77341 0.82323 0.81922 1.20777 1.21241 1.19892 1.22911 0.90330 0.92206 1.01164 0.91964 0.88172 0.91963 0.89730 0.91341 0.90250 0.91195 0.94826 0.91524 0.92618 0.95999 0.96040 0.93046 0.92563 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.15 10.55 -39.24 -0.41 -4.56 16 3 C 0.47 6.35 7.27 36.00 0.26 6.61 16 4 O -0.51 -8.12 15.55 -18.76 -0.29 -8.41 16 5 C -0.10 -1.24 3.54 -89.64 -0.32 -1.56 16 6 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 7 C -0.13 -1.63 6.39 -24.91 -0.16 -1.79 16 8 C 0.04 0.71 6.08 -2.84 -0.02 0.69 16 9 N -0.52 -9.50 5.03 -223.29 -1.12 -10.63 16 10 C 0.08 1.69 1.64 -67.71 -0.11 1.58 16 11 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 12 C -0.13 -2.62 8.83 37.16 0.33 -2.29 16 13 C 0.03 0.86 4.44 -27.89 -0.12 0.73 16 14 C -0.52 -14.44 8.49 -34.44 -0.29 -14.73 16 15 H 0.06 1.50 6.94 -52.49 -0.36 1.14 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 C 0.06 0.97 4.41 -2.30 -0.01 0.96 16 23 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.27 6.59 -51.93 -0.34 0.93 16 30 H 0.03 0.58 6.84 -51.93 -0.36 0.22 16 31 H 0.07 1.37 6.90 -51.93 -0.36 1.01 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.02 0.58 6.57 -51.93 -0.34 0.24 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 0.96 6.80 -51.93 -0.35 0.61 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -31.24 300.77 -6.95 -38.19 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.89 Total: -2.90 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 0.53 Total: -6.88 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.39 Total: -36.55 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.71 Total: -12.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.24 -6.95 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411177884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.686 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds