Wall clock time and date at job start Mon Mar 30 2020 04:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00437 * 2 1 4 4 O 1.20832 * 119.99526 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00892 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.90078 * 62.41175 * 5 3 2 7 7 C 1.55140 * 110.99144 * 298.55132 * 5 3 2 8 8 C 1.54316 * 103.02147 * 206.25113 * 7 5 3 9 9 N 1.47441 * 107.23198 * 22.27800 * 8 7 5 10 10 C 1.46907 * 110.99905 * 123.25887 * 9 8 7 11 11 H 1.08993 * 109.46971 * 303.24361 * 10 9 8 12 12 C 1.53002 * 109.47060 * 183.24971 * 10 9 8 13 13 C 1.53000 * 109.47026 * 63.24682 * 10 9 8 14 14 C 1.50691 * 109.47021 * 185.64184 * 13 10 9 15 15 H 1.08001 * 120.00475 * 355.59088 * 14 13 10 16 16 C 1.37881 * 119.99873 * 175.86118 * 14 13 10 17 17 N 1.31511 * 120.00162 * 359.72578 * 16 14 13 18 18 Si 1.86806 * 119.99959 * 179.72793 * 16 14 13 19 19 H 1.48490 * 109.47240 * 90.00002 * 18 16 14 20 20 H 1.48500 * 109.46858 * 210.00084 * 18 16 14 21 21 H 1.48501 * 109.47138 * 329.99782 * 18 16 14 22 22 C 1.47843 * 108.56698 * 0.99192 * 9 8 7 23 23 H 1.08992 * 109.47148 * 60.00293 * 1 2 3 24 24 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46890 * 299.99785 * 1 2 3 26 26 H 1.08998 * 110.70903 * 87.86193 * 7 5 3 27 27 H 1.09005 * 110.85502 * 324.70367 * 7 5 3 28 28 H 1.09003 * 109.88858 * 262.87477 * 8 7 5 29 29 H 1.08998 * 110.02594 * 141.75678 * 8 7 5 30 30 H 1.08995 * 109.47569 * 59.99803 * 12 10 9 31 31 H 1.09003 * 109.47157 * 180.02562 * 12 10 9 32 32 H 1.09007 * 109.46940 * 299.99558 * 12 10 9 33 33 H 1.09007 * 109.46755 * 65.64228 * 13 10 9 34 34 H 1.09001 * 109.46987 * 305.64672 * 13 10 9 35 35 H 0.97001 * 120.00171 * 179.97438 * 17 16 14 36 36 H 1.09007 * 110.37296 * 94.73564 * 22 9 8 37 37 H 1.09006 * 110.37662 * 217.06934 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9797 0.8241 -0.9017 7 6 4.1571 0.6129 1.2732 8 6 5.5040 1.3444 1.4523 9 7 5.3988 2.6331 0.7437 10 6 5.6699 3.7564 1.6509 11 1 4.9848 3.7131 2.4975 12 6 5.4724 5.0759 0.9020 13 6 7.1113 3.6674 2.1562 14 6 7.3476 4.7367 3.1913 15 1 6.5731 5.4568 3.4105 16 6 8.5547 4.7992 3.8547 17 7 9.4979 3.9224 3.5880 18 14 8.8505 6.1294 5.1325 19 1 8.4252 5.6370 6.4672 20 1 10.2956 6.4694 5.1677 21 1 8.0659 7.3394 4.7781 22 6 4.0452 2.7395 0.1586 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.3158 -0.4537 1.1146 27 1 3.5099 0.7809 2.1341 28 1 6.3093 0.7492 1.0218 29 1 5.6966 1.5181 2.5110 30 1 4.4456 5.1393 0.5421 31 1 5.6740 5.9093 1.5750 32 1 6.1576 5.1192 0.0553 33 1 7.7982 3.8110 1.3220 34 1 7.2804 2.6869 2.6013 35 1 10.3472 3.9666 4.0544 36 1 3.3829 3.2848 0.8310 37 1 4.0894 3.2313 -0.8132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411177884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:31 Heat of formation + Delta-G solvation = -111.217245 kcal Electronic energy + Delta-G solvation = -17695.074936 eV Core-core repulsion = 14857.312274 eV Total energy + Delta-G solvation = -2837.762662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.78921 -39.98596 -37.57073 -36.09659 -34.22234 -31.09684 -30.47637 -28.52262 -28.35700 -25.70856 -23.83466 -22.79308 -21.20257 -20.72042 -18.73814 -18.55202 -17.82919 -17.52530 -16.73923 -16.51415 -15.82729 -15.24937 -14.75247 -14.68949 -14.42696 -14.12118 -13.94365 -13.38651 -13.29638 -13.14998 -12.88803 -12.76905 -12.69328 -12.42516 -12.27061 -12.13306 -11.86075 -11.78002 -11.70712 -11.46424 -11.18247 -11.08415 -10.52076 -9.21353 -8.17244 -6.26663 1.06954 1.40806 1.41655 1.52631 1.64603 2.41813 3.07026 3.16746 3.41849 3.54232 3.82471 4.14743 4.28505 4.29725 4.31323 4.31965 4.35928 4.44019 4.65763 4.69480 4.71331 4.82260 4.93264 4.95560 5.06282 5.17618 5.23872 5.30015 5.38742 5.50046 5.71037 5.79507 6.09922 6.18216 6.37183 6.64845 6.88965 7.41406 8.94821 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046871 B = 0.004713 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.238944 B = 5939.599583 C = 6103.232319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.478 3.522 4 O -0.537 6.537 5 C -0.087 4.087 6 H 0.147 0.853 7 C -0.113 4.113 8 C 0.040 3.960 9 N -0.533 5.533 10 C 0.091 3.909 11 H 0.018 0.982 12 C -0.126 4.126 13 C 0.044 3.956 14 C -0.535 4.535 15 H 0.059 0.941 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.061 3.939 23 H 0.064 0.936 24 H 0.134 0.866 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.052 0.948 33 H -0.008 1.008 34 H -0.001 1.001 35 H 0.263 0.737 36 H 0.041 0.959 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 -8.976 -7.248 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.322 3.678 4 O -0.426 6.426 5 C -0.106 4.106 6 H 0.165 0.835 7 C -0.152 4.152 8 C -0.088 4.088 9 N -0.257 5.257 10 C -0.017 4.017 11 H 0.036 0.964 12 C -0.183 4.183 13 C 0.006 3.994 14 C -0.574 4.574 15 H 0.077 0.923 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.785 3.215 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.066 4.066 23 H 0.082 0.918 24 H 0.152 0.848 25 H 0.077 0.923 26 H 0.134 0.866 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.010 0.990 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.182 -8.704 -7.592 19.076 hybrid contribution -0.229 0.791 1.434 1.654 sum -15.412 -7.913 -6.158 18.386 Atomic orbital electron populations 1.23575 0.74763 1.05830 1.02474 1.86507 1.24971 1.32281 1.83492 1.23642 0.91821 0.81302 0.71025 1.90667 1.67781 1.37480 1.46695 1.22211 0.86424 0.98508 1.03504 0.83523 1.22715 0.95303 1.02011 0.95133 1.22846 0.97953 0.90309 0.97695 1.63706 1.26119 1.02362 1.33559 1.21744 0.97297 0.90817 0.91849 0.96362 1.21687 1.00551 0.96139 0.99946 1.18954 0.90751 0.95545 0.94110 1.21599 0.99833 1.14405 1.21552 0.92317 1.25883 0.95935 0.98328 0.99294 1.70097 1.05887 1.37482 1.43611 0.85523 0.77358 0.79491 0.79142 1.19934 1.20779 1.18880 1.22896 0.88565 0.94374 1.00785 0.91758 0.84771 0.92334 0.86630 0.91645 0.89834 0.93878 0.92313 0.92795 0.92890 0.99003 0.98300 0.92851 0.94020 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.27 10.55 -51.35 -0.54 -7.81 16 3 C 0.48 11.86 7.27 71.23 0.52 12.38 16 4 O -0.54 -16.51 15.55 21.94 0.34 -16.17 16 5 C -0.09 -2.05 3.54 -10.16 -0.04 -2.09 16 6 H 0.15 2.76 8.14 -2.38 -0.02 2.74 16 7 C -0.11 -2.69 6.39 31.77 0.20 -2.49 16 8 C 0.04 1.28 6.08 86.65 0.53 1.81 16 9 N -0.53 -19.26 5.03 -860.37 -4.33 -23.59 16 10 C 0.09 3.91 1.64 44.91 0.07 3.99 16 11 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 12 C -0.13 -4.93 8.83 71.98 0.64 -4.30 16 13 C 0.04 2.33 4.44 29.85 0.13 2.47 16 14 C -0.54 -30.47 8.49 25.60 0.22 -30.25 16 15 H 0.06 3.23 6.94 -2.91 -0.02 3.21 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 18 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 22 C 0.06 1.85 4.41 86.77 0.38 2.23 16 23 H 0.06 0.91 8.13 -2.39 -0.02 0.90 16 24 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 26 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 1.61 8.04 -2.38 -0.02 1.59 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.04 1.62 6.59 -2.39 -0.02 1.60 16 30 H 0.06 1.98 6.84 -2.39 -0.02 1.97 16 31 H 0.05 2.22 6.90 -2.39 -0.02 2.20 16 32 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 33 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 34 H 0.00 -0.08 6.57 -2.39 -0.02 -0.09 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.04 1.39 6.80 -2.38 -0.02 1.37 16 37 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -68.10 300.77 3.13 -64.97 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.04 Total: 6.45 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.31 Total: -14.00 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -4.04 Total: -79.96 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.20 Total: -23.98 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.10 3.13 -64.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411177884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.251 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds