Wall clock time and date at job start Mon Mar 30 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99713 * 2 1 4 4 O 1.20829 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00252 * 180.28028 * 3 2 1 6 6 H 1.09005 * 110.64904 * 59.01931 * 5 3 2 7 7 C 1.54596 * 110.72000 * 295.86888 * 5 3 2 8 8 C 1.53993 * 105.13978 * 219.68319 * 7 5 3 9 9 N 1.47894 * 107.05896 * 358.77526 * 8 7 5 10 10 C 1.46898 * 111.00159 * 145.84573 * 9 8 7 11 11 H 1.09001 * 109.47624 * 176.80659 * 10 9 8 12 12 C 1.53002 * 109.46921 * 296.80514 * 10 9 8 13 13 C 1.53003 * 109.47356 * 56.80189 * 10 9 8 14 14 C 1.50705 * 109.46876 * 63.07714 * 13 10 9 15 15 H 1.07993 * 119.99700 * 1.31754 * 14 13 10 16 16 C 1.37878 * 119.99569 * 181.31942 * 14 13 10 17 17 N 1.31513 * 120.00195 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99592 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47080 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47004 * 119.99900 * 18 16 14 21 21 H 1.48503 * 109.47335 * 239.99956 * 18 16 14 22 22 C 1.48731 * 105.94307 * 25.20454 * 9 8 7 23 23 H 1.09006 * 109.47042 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47256 * 299.99834 * 1 2 3 25 25 H 1.08999 * 109.47812 * 60.00083 * 1 2 3 26 26 H 1.08999 * 110.30963 * 338.60050 * 7 5 3 27 27 H 1.09003 * 110.30880 * 100.77186 * 7 5 3 28 28 H 1.09001 * 109.91735 * 118.13146 * 8 7 5 29 29 H 1.09004 * 109.91877 * 239.22368 * 8 7 5 30 30 H 1.09001 * 109.46976 * 292.54941 * 12 10 9 31 31 H 1.08993 * 109.47409 * 52.55036 * 12 10 9 32 32 H 1.09004 * 109.47419 * 172.55118 * 12 10 9 33 33 H 1.09004 * 109.47146 * 183.07482 * 13 10 9 34 34 H 1.08998 * 109.46735 * 303.07995 * 13 10 9 35 35 H 0.97002 * 119.99708 * 180.02562 * 17 16 14 36 36 H 1.09003 * 110.83596 * 202.57943 * 22 9 8 37 37 H 1.08996 * 110.58458 * 79.38232 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0064 6 1 3.9738 0.7728 -0.8838 7 6 4.1511 0.6708 1.2908 8 6 5.3180 1.5988 1.6762 9 7 5.4014 2.6462 0.6354 10 6 5.8266 3.9286 1.2119 11 1 5.9344 4.6665 0.4169 12 6 4.7765 4.4099 2.2153 13 6 7.1681 3.7475 1.9250 14 6 8.2196 3.3464 0.9228 15 1 7.9621 3.2529 -0.1218 16 6 9.5104 3.0989 1.3396 17 7 9.8238 3.2123 2.6118 18 14 10.8136 2.6011 0.0973 19 1 10.2096 2.5446 -1.2581 20 1 11.9137 3.5986 0.1073 21 1 11.3539 1.2649 0.4552 22 6 4.0381 2.7497 0.0499 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 3.3975 0.6636 2.0782 27 1 4.5164 -0.3395 1.1064 28 1 5.1247 2.0548 2.6472 29 1 6.2479 1.0312 1.7114 30 1 3.8585 4.6653 1.6860 31 1 4.5723 3.6178 2.9355 32 1 5.1507 5.2896 2.7390 33 1 7.4571 4.6855 2.3992 34 1 7.0742 2.9706 2.6837 35 1 10.7320 3.0385 2.9049 36 1 4.0776 3.1793 -0.9511 37 1 3.3869 3.3376 0.6966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411177887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:36 Heat of formation + Delta-G solvation = -103.244479 kcal Electronic energy + Delta-G solvation = -17946.276674 eV Core-core repulsion = 15108.859737 eV Total energy + Delta-G solvation = -2837.416937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79059 -40.08582 -37.55046 -35.88625 -34.21067 -30.70783 -30.27825 -29.00791 -28.38959 -25.39580 -23.86373 -23.23012 -21.13966 -20.24774 -18.67792 -18.34922 -17.96298 -17.39812 -16.48875 -16.42927 -16.33569 -15.06602 -14.90598 -14.62819 -14.35181 -14.21809 -13.65023 -13.41974 -13.34002 -13.02803 -12.84269 -12.67288 -12.57521 -12.40433 -12.29792 -12.28992 -11.87493 -11.80997 -11.57962 -11.35426 -11.10819 -10.99434 -10.46797 -9.06314 -8.08360 -6.13526 1.09664 1.43773 1.45163 1.58375 1.67743 2.49765 3.16510 3.27730 3.46212 3.64084 3.90221 4.15318 4.18361 4.32036 4.33477 4.36335 4.38938 4.48507 4.54017 4.69578 4.71779 4.81636 4.88958 5.00326 5.07782 5.16336 5.25569 5.28688 5.33206 5.47292 5.72386 5.91030 6.17590 6.26902 6.47593 6.67650 7.00777 7.52941 9.03812 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038289 B = 0.005461 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.108767 B = 5126.006948 C = 5438.145729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.479 3.521 4 O -0.535 6.535 5 C -0.082 4.082 6 H 0.136 0.864 7 C -0.104 4.104 8 C 0.039 3.961 9 N -0.505 5.505 10 C 0.085 3.915 11 H 0.067 0.933 12 C -0.178 4.178 13 C 0.035 3.965 14 C -0.501 4.501 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.940 5.940 18 Si 0.957 3.043 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.044 3.956 23 H 0.133 0.867 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H -0.009 1.009 34 H 0.001 0.999 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.018 -7.267 -4.525 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.323 3.677 4 O -0.424 6.424 5 C -0.101 4.101 6 H 0.154 0.846 7 C -0.142 4.142 8 C -0.089 4.089 9 N -0.229 5.229 10 C -0.024 4.024 11 H 0.085 0.915 12 C -0.236 4.236 13 C -0.003 4.003 14 C -0.539 4.539 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.582 5.582 18 Si 0.783 3.217 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.084 4.084 23 H 0.151 0.849 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.010 0.990 34 H 0.019 0.981 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.719 -7.130 -4.815 18.803 hybrid contribution 0.263 0.354 0.424 0.612 sum -16.456 -6.776 -4.391 18.330 Atomic orbital electron populations 1.23574 0.74769 1.05778 1.02521 1.86520 1.24991 1.32411 1.83522 1.23679 0.91806 0.81272 0.70980 1.90650 1.67707 1.37358 1.46713 1.21946 0.86219 0.98896 1.03072 0.84624 1.22338 0.96610 1.00443 0.94805 1.22772 0.98476 0.93441 0.94200 1.64900 1.22310 1.06145 1.29549 1.21742 0.94818 0.90386 0.95452 0.91527 1.22430 0.99598 1.01566 1.00036 1.19079 0.91420 0.94914 0.94842 1.21521 0.93959 1.43585 0.94851 0.92216 1.25835 1.00980 0.96294 0.96790 1.70101 1.19749 1.52098 1.16248 0.85516 0.78900 0.77577 0.79726 1.18881 1.21032 1.20801 1.23252 0.89738 0.94196 1.01209 0.84908 0.92110 0.91837 0.90582 0.87941 0.93981 0.91752 0.91660 0.92715 0.92281 0.99033 0.98066 0.93275 0.89487 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.58 10.57 -51.38 -0.54 -8.13 16 3 C 0.48 12.13 7.14 71.23 0.51 12.64 16 4 O -0.53 -16.29 15.50 21.95 0.34 -15.95 16 5 C -0.08 -2.07 3.55 -10.34 -0.04 -2.11 16 6 H 0.14 3.02 8.14 -2.38 -0.02 3.00 16 7 C -0.10 -2.64 6.50 31.47 0.20 -2.44 16 8 C 0.04 1.36 5.07 86.45 0.44 1.80 16 9 N -0.51 -18.94 5.01 -857.32 -4.29 -23.23 16 10 C 0.08 3.50 2.48 44.92 0.11 3.61 16 11 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 12 C -0.18 -6.19 8.36 71.98 0.60 -5.59 16 13 C 0.03 1.80 4.23 29.85 0.13 1.92 16 14 C -0.50 -28.23 8.79 25.60 0.23 -28.00 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 17 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 18 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 C 0.04 1.34 5.43 86.61 0.47 1.81 16 23 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 25 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 26 H 0.08 1.77 7.84 -2.39 -0.02 1.75 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.04 1.51 5.28 -2.39 -0.01 1.50 16 29 H 0.06 2.56 8.13 -2.38 -0.02 2.54 16 30 H 0.06 2.03 6.39 -2.39 -0.02 2.01 16 31 H 0.05 1.87 5.95 -2.39 -0.01 1.86 16 32 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 34 H 0.00 0.06 6.76 -2.39 -0.02 0.04 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.06 1.80 4.95 -2.39 -0.01 1.79 16 Total: -1.00 -67.02 297.40 3.17 -63.85 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.04 Total: 7.77 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.31 Total: -14.49 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -4.01 Total: -80.19 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.20 Total: -24.08 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.02 3.17 -63.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411177887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.392 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds