Wall clock time and date at job start Mon Mar 30 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.98862 * 2 1 4 4 C 1.54100 * 109.87548 * 238.91804 * 2 1 3 5 5 C 1.54810 * 104.18609 * 238.54591 * 4 2 1 6 6 H 1.08994 * 110.91127 * 97.35733 * 5 4 2 7 7 N 1.46505 * 110.90478 * 220.92094 * 5 4 2 8 8 C 1.34777 * 120.00115 * 204.99827 * 7 5 4 9 9 O 1.21282 * 119.99620 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 C 1.54989 * 102.09325 * 339.11648 * 5 4 2 22 22 O 1.43740 * 109.88241 * 121.08847 * 2 1 3 23 23 H 1.09003 * 109.47110 * 181.08647 * 1 2 3 24 24 H 1.09000 * 109.47270 * 301.08227 * 1 2 3 25 25 H 1.08992 * 109.47619 * 61.08346 * 1 2 3 26 26 H 1.09000 * 110.48971 * 119.86470 * 4 2 1 27 27 H 1.09006 * 110.48760 * 357.21924 * 4 2 1 28 28 H 0.97003 * 120.00244 * 24.99857 * 7 5 4 29 29 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 30 30 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 31 31 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 32 32 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 33 33 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 34 34 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 35 35 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.62182 * 155.52679 * 21 5 4 37 37 H 1.09007 * 110.62231 * 278.52860 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0539 -0.7482 -1.2411 5 6 2.9194 -1.8914 -0.6577 6 1 2.3541 -2.8221 -0.6106 7 7 4.1474 -2.0675 -1.4371 8 6 4.7753 -3.2600 -1.4453 9 8 4.3240 -4.1872 -0.8069 10 6 6.0387 -3.4410 -2.2465 11 6 6.5437 -4.8762 -2.0854 12 6 7.8267 -5.0596 -2.8985 13 6 8.3238 -6.4735 -2.7403 14 1 7.7792 -7.1712 -2.1214 15 6 9.4737 -6.8762 -3.3857 16 7 9.9077 -8.1099 -3.2472 17 14 10.4152 -5.6696 -4.4567 18 1 11.4242 -4.9582 -3.6315 19 1 11.0997 -6.4068 -5.5490 20 1 9.4699 -4.6845 -5.0410 21 6 3.2379 -1.3642 0.7645 22 8 2.0188 -0.6980 1.1576 23 1 -0.3633 -1.0275 0.0195 24 1 -0.3634 0.5305 0.8801 25 1 -0.3634 0.4969 -0.8994 26 1 2.6618 -0.0859 -1.8575 27 1 1.2244 -1.1548 -1.8198 28 1 4.5085 -1.3257 -1.9474 29 1 6.7983 -2.7458 -1.8891 30 1 5.8328 -3.2445 -3.2987 31 1 5.7839 -5.5710 -2.4432 32 1 6.7494 -5.0729 -1.0333 33 1 7.6214 -4.8627 -3.9507 34 1 8.5863 -4.3649 -2.5403 35 1 10.7165 -8.3934 -3.7015 36 1 3.4585 -2.1908 1.4400 37 1 4.0685 -0.6588 0.7354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594065753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:14 Heat of formation + Delta-G solvation = -104.820568 kcal Electronic energy + Delta-G solvation = -16954.884413 eV Core-core repulsion = 14117.399132 eV Total energy + Delta-G solvation = -2837.485281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35297 -38.97861 -34.84787 -34.26690 -32.49104 -32.11442 -30.33816 -28.16158 -26.23379 -24.00230 -22.13481 -21.28730 -20.63351 -19.86802 -17.22525 -17.01154 -16.54823 -15.78525 -15.66801 -15.37547 -14.92270 -14.20541 -14.04021 -13.56907 -13.36337 -12.89884 -12.71710 -12.61206 -12.36729 -11.97717 -11.85578 -11.63061 -11.39446 -11.12425 -10.99179 -10.79387 -10.08108 -10.03487 -9.86321 -9.71228 -9.46679 -9.14491 -9.12993 -8.51359 -6.00902 -3.98769 2.76252 2.99735 3.31125 3.38237 3.40886 3.68846 4.13356 4.37275 4.46704 4.58472 4.75390 4.85317 4.99574 5.03816 5.22196 5.29807 5.32320 5.38805 5.51997 5.56040 5.62330 5.63249 5.70291 5.81530 6.08016 6.27794 6.54719 6.61791 6.67843 6.91182 7.36209 7.44545 7.45275 7.82337 8.31283 8.59032 9.05933 9.61041 11.12848 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.065283 B = 0.003580 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.798964 B = 7818.862228 C = 8003.800010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 H 0.069 0.931 4 C -0.160 4.160 5 C 0.113 3.887 6 H 0.106 0.894 7 N -0.731 5.731 8 C 0.513 3.487 9 O -0.531 6.531 10 C -0.141 4.141 11 C -0.088 4.088 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.064 3.936 16 N -0.904 5.904 17 Si 0.882 3.118 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.036 3.964 22 O -0.371 6.371 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.400 0.600 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.015 0.985 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.100 0.900 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 20.217 2.822 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.015 3.985 3 H 0.087 0.913 4 C -0.198 4.198 5 C 0.007 3.993 6 H 0.124 0.876 7 N -0.385 5.385 8 C 0.301 3.699 9 O -0.406 6.406 10 C -0.181 4.181 11 C -0.126 4.126 12 C -0.052 4.052 13 C -0.557 4.557 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.042 4.042 22 O -0.290 6.290 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.235 0.765 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.030 19.394 3.443 25.395 hybrid contribution 0.918 0.969 -1.062 1.706 sum -15.112 20.363 2.381 25.469 Atomic orbital electron populations 1.21945 0.93530 1.03077 1.02399 1.22688 0.95375 0.95738 0.84726 0.91260 1.23289 1.00649 0.97429 0.98470 1.22450 0.86327 0.99798 0.90740 0.87575 1.46075 1.26729 1.14200 1.51535 1.21266 0.85887 0.81469 0.81249 1.90707 1.66466 1.40333 1.43099 1.21878 0.93692 1.02530 0.99998 1.21274 0.98607 0.91176 1.01538 1.19606 0.92756 0.97714 0.95094 1.21168 1.09325 0.95381 1.29854 0.90926 1.25059 0.97184 0.95082 0.96345 1.69924 1.23512 1.16924 1.44002 0.86754 0.80209 0.81558 0.80571 1.20348 1.21452 1.19060 1.23987 0.87463 0.96731 0.95983 1.88929 1.39756 1.67560 1.32746 0.91672 0.91824 0.91225 0.89990 0.89446 0.76493 0.89264 0.89284 0.92047 0.92059 0.96671 0.97092 0.92782 0.88219 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.36 37.16 0.35 -0.67 16 2 C 0.07 0.58 4.06 -26.16 -0.11 0.47 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.16 -1.16 6.39 -25.20 -0.16 -1.32 16 5 C 0.11 1.15 3.50 -65.92 -0.23 0.92 16 6 H 0.11 1.32 7.54 -51.93 -0.39 0.93 16 7 N -0.73 -7.64 5.19 -51.87 -0.27 -7.90 16 8 C 0.51 7.59 7.83 -10.99 -0.09 7.50 16 9 O -0.53 -10.15 15.62 5.56 0.09 -10.07 16 10 C -0.14 -2.10 5.70 -27.89 -0.16 -2.26 16 11 C -0.09 -1.80 4.44 -26.73 -0.12 -1.92 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 14 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -28.40 13.96 55.43 0.77 -27.62 16 17 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 21 C 0.04 0.38 7.41 38.21 0.28 0.67 16 22 O -0.37 -4.11 11.19 -35.23 -0.39 -4.50 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.46 7.77 -51.93 -0.40 0.05 16 27 H 0.09 0.59 7.70 -51.93 -0.40 0.19 16 28 H 0.40 2.93 8.41 -40.82 -0.34 2.59 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 34 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -34.16 305.85 -6.75 -40.91 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.11 Total: -1.69 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.77 Total: -10.75 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.50 Total: -35.53 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.31 Total: -14.57 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.16 -6.75 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594065753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.913 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds