Wall clock time and date at job start Mon Mar 30 2020 04:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.89637 * 2 1 4 4 C 1.54384 * 109.83055 * 239.06732 * 2 1 3 5 5 C 1.55306 * 102.25092 * 219.13239 * 4 2 1 6 6 H 1.09001 * 111.11873 * 276.17000 * 5 4 2 7 7 N 1.46499 * 111.12407 * 152.05385 * 5 4 2 8 8 C 1.34779 * 119.99872 * 154.99869 * 7 5 4 9 9 O 1.21286 * 120.00040 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 5 11 11 C 1.52992 * 109.47592 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.54945 * 100.94417 * 34.12927 * 5 4 2 22 22 O 1.43234 * 109.83076 * 120.93251 * 2 1 3 23 23 H 1.09007 * 109.47021 * 180.93540 * 1 2 3 24 24 H 1.08995 * 109.47395 * 300.93146 * 1 2 3 25 25 H 1.08998 * 109.47256 * 60.93259 * 1 2 3 26 26 H 1.08998 * 110.84875 * 100.93713 * 4 2 1 27 27 H 1.08998 * 110.84442 * 337.31980 * 4 2 1 28 28 H 0.96992 * 119.99793 * 334.99500 * 7 5 4 29 29 H 1.09002 * 109.47210 * 59.99599 * 10 8 7 30 30 H 1.09001 * 109.46665 * 299.99857 * 10 8 7 31 31 H 1.09002 * 109.47103 * 59.99616 * 11 10 8 32 32 H 1.08998 * 109.46862 * 300.00428 * 11 10 8 33 33 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 34 34 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.08999 * 110.30271 * 82.47450 * 21 5 4 37 37 H 1.08994 * 110.31151 * 204.63839 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0538 -0.7465 -1.2457 5 6 3.2730 -1.5222 -0.6767 6 1 4.1622 -0.8922 -0.6513 7 7 3.5206 -2.7489 -1.4384 8 6 4.7553 -3.2887 -1.4637 9 8 5.6615 -2.7587 -0.8564 10 6 5.0099 -4.5509 -2.2467 11 6 6.4813 -4.9474 -2.1109 12 6 6.7396 -6.2292 -2.9053 13 6 8.1891 -6.6193 -2.7720 14 1 8.8590 -6.0138 -2.1796 15 6 8.6598 -7.7498 -3.4056 16 7 7.8440 -8.4874 -4.1266 17 14 10.4564 -8.2337 -3.2398 18 1 10.7766 -8.4652 -1.8082 19 1 10.7071 -9.4778 -4.0109 20 1 11.3138 -7.1428 -3.7687 21 6 2.7747 -1.8444 0.7546 22 8 2.0159 -0.6926 1.1558 23 1 -0.3633 -1.0276 0.0168 24 1 -0.3634 0.5282 0.8815 25 1 -0.3634 0.4993 -0.8982 26 1 2.3672 -0.0425 -2.0166 27 1 1.3012 -1.4349 -1.6303 28 1 2.7959 -3.1726 -1.9243 29 1 4.7754 -4.3802 -3.2975 30 1 4.3801 -5.3519 -1.8594 31 1 6.7161 -5.1179 -1.0603 32 1 7.1106 -4.1462 -2.4984 33 1 6.5046 -6.0590 -3.9560 34 1 6.1102 -7.0301 -2.5174 35 1 8.1752 -9.2825 -4.5726 36 1 2.1401 -2.7306 0.7436 37 1 3.6209 -1.9925 1.4254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594065756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:21 Heat of formation + Delta-G solvation = -109.545025 kcal Electronic energy + Delta-G solvation = -16909.239064 eV Core-core repulsion = 14071.548915 eV Total energy + Delta-G solvation = -2837.690149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31637 -38.94410 -34.79320 -34.16199 -32.41243 -32.07188 -30.26733 -27.69737 -26.34441 -24.02147 -21.85746 -21.58811 -20.49353 -19.80251 -17.42164 -16.79152 -16.45330 -16.02548 -15.41731 -15.23385 -14.44999 -14.28116 -14.01061 -13.62239 -13.23370 -13.07022 -12.87708 -12.27650 -12.18279 -11.83520 -11.80384 -11.50400 -11.32725 -11.11554 -10.78691 -10.63098 -10.55401 -9.83925 -9.75839 -9.68588 -9.28772 -9.12013 -9.03692 -8.31971 -5.97861 -3.99357 2.81601 3.02447 3.36688 3.40054 3.43950 3.68202 4.11724 4.45534 4.49319 4.58443 4.77122 4.88857 4.98058 5.13265 5.27631 5.33977 5.38188 5.38701 5.58806 5.65091 5.68683 5.70781 5.77197 5.85287 6.23114 6.34875 6.71075 6.74908 6.91602 7.15053 7.49729 7.70204 7.82934 8.02669 8.36571 8.46650 9.07547 9.64615 11.13646 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.074076 B = 0.003382 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.897889 B = 8276.606625 C = 8454.811523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.076 3.924 3 H 0.083 0.917 4 C -0.160 4.160 5 C 0.112 3.888 6 H 0.107 0.893 7 N -0.730 5.730 8 C 0.514 3.486 9 O -0.534 6.534 10 C -0.138 4.138 11 C -0.095 4.095 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.040 3.960 22 O -0.376 6.376 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.402 0.598 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.224 14.817 4.830 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.101 0.899 4 C -0.198 4.198 5 C 0.006 3.994 6 H 0.125 0.875 7 N -0.384 5.384 8 C 0.302 3.698 9 O -0.409 6.409 10 C -0.178 4.178 11 C -0.134 4.134 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.038 4.038 22 O -0.295 6.295 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.236 0.764 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.590 15.104 5.376 22.362 hybrid contribution 0.543 -0.639 -0.458 0.955 sum -15.047 14.464 4.918 21.443 Atomic orbital electron populations 1.22146 0.94719 1.02695 1.02398 1.22667 0.94496 0.96467 0.84511 0.89939 1.23458 0.97495 1.00220 0.98595 1.22563 0.98866 0.87184 0.90829 0.87479 1.45996 1.12093 1.27119 1.53170 1.21373 0.81329 0.86391 0.80689 1.90689 1.43384 1.62704 1.44162 1.21855 1.02349 0.93499 1.00084 1.21454 0.90418 1.00042 1.01444 1.19125 0.96709 0.90910 0.94887 1.21240 0.95100 1.09087 1.30324 0.92617 1.25018 0.97705 0.96457 0.95309 1.69951 1.34987 1.16187 1.32651 0.86647 0.85366 0.77750 0.78188 1.20212 1.21326 1.20225 1.23802 0.95351 0.88763 0.95905 1.88467 1.70797 1.40521 1.29742 0.92127 0.91823 0.91442 0.89265 0.89758 0.76376 0.89250 0.89231 0.92667 0.92680 0.96615 0.96600 0.93001 0.91851 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.44 37.16 0.35 -0.73 16 2 C 0.08 0.63 4.16 -26.00 -0.11 0.52 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.16 -1.19 6.20 -24.78 -0.15 -1.35 16 5 C 0.11 1.17 3.48 -65.68 -0.23 0.95 16 6 H 0.11 1.33 7.54 -51.93 -0.39 0.94 16 7 N -0.73 -8.04 5.21 -51.63 -0.27 -8.31 16 8 C 0.51 7.93 7.83 -10.99 -0.09 7.84 16 9 O -0.53 -10.42 15.62 5.55 0.09 -10.34 16 10 C -0.14 -2.21 5.70 -27.89 -0.16 -2.37 16 11 C -0.10 -2.04 4.44 -26.74 -0.12 -2.16 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C 0.04 0.44 7.48 38.18 0.29 0.72 16 22 O -0.38 -4.26 11.02 -35.23 -0.39 -4.65 16 23 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.52 7.70 -51.93 -0.40 0.12 16 28 H 0.40 3.24 8.57 -40.82 -0.35 2.89 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -33.32 309.88 -7.13 -40.45 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.17 Total: -2.48 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.77 Total: -10.00 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.47 Total: -34.67 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.30 Total: -14.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.32 -7.13 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594065756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.098 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds