Wall clock time and date at job start Mon Mar 30 2020 04:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.89637 * 2 1 4 4 C 1.54384 * 109.83055 * 239.06732 * 2 1 3 5 5 C 1.55306 * 102.25092 * 219.13239 * 4 2 1 6 6 H 1.09001 * 111.11873 * 276.17000 * 5 4 2 7 7 N 1.46499 * 111.12407 * 152.05385 * 5 4 2 8 8 C 1.34779 * 119.99872 * 154.99869 * 7 5 4 9 9 O 1.21286 * 120.00040 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 5 11 11 C 1.52992 * 109.47592 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.54945 * 100.94417 * 34.12927 * 5 4 2 22 22 O 1.43234 * 109.83076 * 120.93251 * 2 1 3 23 23 H 1.09007 * 109.47021 * 180.93540 * 1 2 3 24 24 H 1.08995 * 109.47395 * 300.93146 * 1 2 3 25 25 H 1.08998 * 109.47256 * 60.93259 * 1 2 3 26 26 H 1.08998 * 110.84875 * 100.93713 * 4 2 1 27 27 H 1.08998 * 110.84442 * 337.31980 * 4 2 1 28 28 H 0.96992 * 119.99793 * 334.99500 * 7 5 4 29 29 H 1.09002 * 109.47210 * 59.99599 * 10 8 7 30 30 H 1.09001 * 109.46665 * 299.99857 * 10 8 7 31 31 H 1.09002 * 109.47103 * 59.99616 * 11 10 8 32 32 H 1.08998 * 109.46862 * 300.00428 * 11 10 8 33 33 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 34 34 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.08999 * 110.30271 * 82.47450 * 21 5 4 37 37 H 1.08994 * 110.31151 * 204.63839 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0538 -0.7465 -1.2457 5 6 3.2730 -1.5222 -0.6767 6 1 4.1622 -0.8922 -0.6513 7 7 3.5206 -2.7489 -1.4384 8 6 4.7553 -3.2887 -1.4637 9 8 5.6615 -2.7587 -0.8564 10 6 5.0099 -4.5509 -2.2467 11 6 6.4813 -4.9474 -2.1109 12 6 6.7396 -6.2292 -2.9053 13 6 8.1891 -6.6193 -2.7720 14 1 8.8590 -6.0138 -2.1796 15 6 8.6598 -7.7498 -3.4056 16 7 7.8440 -8.4874 -4.1266 17 14 10.4564 -8.2337 -3.2398 18 1 10.7766 -8.4652 -1.8082 19 1 10.7071 -9.4778 -4.0109 20 1 11.3138 -7.1428 -3.7687 21 6 2.7747 -1.8444 0.7546 22 8 2.0159 -0.6926 1.1558 23 1 -0.3633 -1.0276 0.0168 24 1 -0.3634 0.5282 0.8815 25 1 -0.3634 0.4993 -0.8982 26 1 2.3672 -0.0425 -2.0166 27 1 1.3012 -1.4349 -1.6303 28 1 2.7959 -3.1726 -1.9243 29 1 4.7754 -4.3802 -3.2975 30 1 4.3801 -5.3519 -1.8594 31 1 6.7161 -5.1179 -1.0603 32 1 7.1106 -4.1462 -2.4984 33 1 6.5046 -6.0590 -3.9560 34 1 6.1102 -7.0301 -2.5174 35 1 8.1752 -9.2825 -4.5726 36 1 2.1401 -2.7306 0.7436 37 1 3.6209 -1.9925 1.4254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594065756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:21 Heat of formation + Delta-G solvation = -132.796278 kcal Electronic energy + Delta-G solvation = -16910.247314 eV Core-core repulsion = 14071.548915 eV Total energy + Delta-G solvation = -2838.698399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27923 -40.01483 -36.21031 -35.70509 -34.03482 -33.07197 -31.32753 -29.38869 -27.04055 -25.87036 -23.09698 -22.34011 -21.80739 -21.18231 -18.69209 -18.18470 -17.53312 -17.37985 -16.70334 -16.47742 -16.15956 -15.34268 -15.02781 -14.71599 -14.51629 -14.22025 -13.93872 -13.62600 -13.48405 -13.13555 -12.83911 -12.66248 -12.53322 -12.50398 -12.41876 -12.15294 -11.78455 -11.54673 -11.46373 -11.27839 -10.80727 -10.61062 -10.53840 -10.13601 -8.20231 -6.30083 1.39713 1.42403 1.50520 1.59781 2.03039 2.41847 2.90879 3.12816 3.37566 3.78685 3.86169 3.88432 4.06785 4.17530 4.23645 4.28349 4.42145 4.65244 4.69053 4.77898 4.79609 4.89641 4.92547 4.98286 5.11609 5.14115 5.20187 5.31991 5.41568 5.54799 5.76373 5.87526 6.00322 6.27870 6.51310 6.85441 7.23600 7.38560 8.91085 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.074076 B = 0.003382 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.897889 B = 8276.606625 C = 8454.811523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.067 3.933 3 H 0.088 0.912 4 C -0.145 4.145 5 C 0.108 3.892 6 H 0.085 0.915 7 N -0.706 5.706 8 C 0.518 3.482 9 O -0.582 6.582 10 C -0.129 4.129 11 C -0.084 4.084 12 C 0.026 3.974 13 C -0.550 4.550 14 H 0.051 0.949 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.269 1.269 21 C 0.042 3.958 22 O -0.397 6.397 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.420 0.580 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.356 15.254 4.279 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.010 3.990 3 H 0.106 0.894 4 C -0.183 4.183 5 C 0.002 3.998 6 H 0.103 0.897 7 N -0.360 5.360 8 C 0.306 3.694 9 O -0.461 6.461 10 C -0.169 4.169 11 C -0.122 4.122 12 C -0.011 4.011 13 C -0.588 4.588 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.785 3.215 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.036 4.036 22 O -0.316 6.316 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.259 0.741 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.782 15.552 4.812 23.380 hybrid contribution 0.838 -0.744 -0.276 1.154 sum -15.943 14.808 4.536 22.227 Atomic orbital electron populations 1.22127 0.93250 1.02904 1.03257 1.22916 0.95665 0.96534 0.83863 0.89412 1.23440 0.96147 1.00284 0.98441 1.22576 0.99422 0.86708 0.91082 0.89704 1.45700 1.11111 1.26884 1.52279 1.21154 0.82103 0.86009 0.80090 1.90682 1.45204 1.63954 1.46293 1.21682 0.98738 0.94629 1.01858 1.21171 0.94229 0.97416 0.99393 1.19014 0.95081 0.92444 0.94545 1.21686 0.96768 1.09649 1.30672 0.93108 1.25893 1.02469 0.96308 0.94757 1.70053 1.37059 1.16605 1.33199 0.85573 0.79668 0.77734 0.78521 1.19478 1.20334 1.19444 1.23712 0.94999 0.89321 0.95596 1.88450 1.70928 1.40745 1.31521 0.92170 0.92272 0.89364 0.87792 0.87675 0.74138 0.87045 0.87138 0.94190 0.94117 0.97971 0.98017 0.92637 0.90798 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.44 71.98 0.68 -1.03 16 2 C 0.07 0.98 4.16 31.07 0.13 1.11 16 3 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.15 -1.76 6.20 31.86 0.20 -1.56 16 5 C 0.11 2.13 3.48 46.45 0.16 2.29 16 6 H 0.08 2.11 7.54 -2.39 -0.02 2.09 16 7 N -0.71 -14.13 5.21 -435.65 -2.27 -16.40 16 8 C 0.52 15.51 7.83 87.66 0.69 16.19 16 9 O -0.58 -23.01 15.62 -3.05 -0.05 -23.06 16 10 C -0.13 -3.98 5.70 29.84 0.17 -3.81 16 11 C -0.08 -3.64 4.44 30.59 0.14 -3.50 16 12 C 0.03 1.38 4.97 29.85 0.15 1.53 16 13 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 14 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 17 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.04 0.89 7.48 72.65 0.54 1.43 16 22 O -0.40 -8.63 11.02 -148.98 -1.64 -10.27 16 23 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 0.87 7.70 -2.39 -0.02 0.85 16 28 H 0.42 5.37 8.57 -92.71 -0.79 4.58 16 29 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 32 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -72.92 309.88 2.15 -70.77 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.24 Total: 6.50 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.55 Total: -18.75 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.98 Total: -72.37 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.69 Total: -33.33 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.92 2.15 -70.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594065756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.023 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds