Wall clock time and date at job start Mon Mar 30 2020 04:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.50699 * 109.47081 * 239.99936 * 2 1 3 5 5 H 1.07995 * 120.00632 * 239.99929 * 4 2 1 6 6 C 1.37877 * 119.99856 * 60.00481 * 4 2 1 7 7 N 1.31519 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47108 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47674 * 119.99115 * 8 6 4 11 11 H 1.48498 * 109.47485 * 239.99777 * 8 6 4 12 12 C 1.50703 * 109.47380 * 120.00396 * 2 1 3 13 13 O 1.21286 * 119.99789 * 34.73098 * 12 2 1 14 14 N 1.34774 * 120.00015 * 214.74069 * 12 2 1 15 15 C 1.47153 * 120.98313 * 354.62917 * 14 12 2 16 16 C 1.53297 * 108.38700 * 230.51976 * 15 14 12 17 17 H 1.08994 * 109.51093 * 67.62054 * 16 15 14 18 18 C 1.52995 * 109.51106 * 187.77432 * 16 15 14 19 19 O 1.42968 * 109.22143 * 307.69675 * 16 15 14 20 20 C 1.42962 * 114.16263 * 62.57981 * 19 16 15 21 21 C 1.47153 * 120.98307 * 174.61644 * 14 12 2 22 22 H 1.09001 * 109.68374 * 9.71802 * 21 14 12 23 23 C 1.52999 * 109.67968 * 249.20332 * 21 14 12 24 24 H 1.09003 * 109.47027 * 304.90219 * 1 2 3 25 25 H 1.09002 * 109.47321 * 64.90554 * 1 2 3 26 26 H 1.09000 * 109.47205 * 184.90484 * 1 2 3 27 27 H 0.97000 * 119.99968 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.67940 * 110.79408 * 15 14 12 29 29 H 1.09003 * 109.68072 * 350.24117 * 15 14 12 30 30 H 1.08999 * 109.47201 * 60.00113 * 18 16 15 31 31 H 1.09005 * 109.46781 * 179.97438 * 18 16 15 32 32 H 1.09004 * 109.47118 * 299.99822 * 18 16 15 33 33 H 1.08999 * 109.51103 * 177.49230 * 20 19 16 34 34 H 1.09004 * 109.51475 * 57.34565 * 20 19 16 35 35 H 1.09000 * 109.47183 * 59.99929 * 23 21 14 36 36 H 1.08996 * 109.47042 * 179.97438 * 23 21 14 37 37 H 1.08998 * 109.47396 * 300.00219 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 6 2.0324 -0.7105 1.2304 13 8 1.4207 -1.6585 1.6755 14 7 3.1613 -0.2923 1.8363 15 6 3.9831 0.7787 1.2508 16 6 5.4369 0.2959 1.1929 17 1 5.5223 -0.5164 0.4712 18 6 6.3435 1.4536 0.7705 19 8 5.8297 -0.1710 2.4859 20 6 5.0803 -1.2944 2.9550 21 6 3.6083 -0.8930 3.1031 22 1 3.0070 -1.7751 3.3234 23 6 3.4633 0.1253 4.2357 24 1 -0.3633 0.5880 0.8428 25 1 -0.3634 0.4358 -0.9307 26 1 -0.3633 -1.0239 0.0879 27 1 0.7082 1.1610 -3.4844 28 1 3.9176 1.6725 1.8712 29 1 3.6306 1.0033 0.2441 30 1 6.2588 2.2642 1.4943 31 1 7.3770 1.1096 0.7300 32 1 6.0406 1.8120 -0.2134 33 1 5.4696 -1.6137 3.9217 34 1 5.1643 -2.1126 2.2396 35 1 2.4185 0.4227 4.3255 36 1 3.7948 -0.3232 5.1721 37 1 4.0729 1.0019 4.0164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596753844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:27 Heat of formation + Delta-G solvation = -89.781152 kcal Electronic energy + Delta-G solvation = -18684.822631 eV Core-core repulsion = 15847.989508 eV Total energy + Delta-G solvation = -2836.833123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.96481 -37.84737 -34.41982 -34.00153 -33.05363 -30.61938 -29.68993 -26.17315 -25.89791 -25.26120 -23.31300 -21.64040 -19.98540 -18.16326 -16.68650 -16.52942 -16.23211 -15.34326 -15.10285 -14.59757 -14.45497 -13.97264 -13.37290 -12.93959 -12.85478 -12.32769 -12.15460 -12.09436 -11.86271 -11.63603 -11.41243 -11.26622 -11.01792 -10.90540 -10.83032 -10.48362 -10.28575 -10.24002 -10.07882 -9.70918 -9.06982 -8.66032 -8.37276 -7.95413 -6.14808 -4.23377 3.22193 3.30757 3.34651 3.55049 3.67926 3.92958 4.35509 4.92797 5.07586 5.16135 5.22308 5.30954 5.37414 5.55069 5.68393 5.73651 5.78123 5.88095 5.92761 5.96323 6.08942 6.17473 6.23562 6.36462 6.42532 6.75899 6.96493 7.04520 7.16643 7.35941 7.51658 7.70946 7.91197 8.10825 8.25804 8.77483 9.15769 9.42543 10.90681 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.008798 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.905712 B = 3181.689987 C = 3794.670112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.031 3.969 3 H 0.046 0.954 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.532 3.468 13 O -0.562 6.562 14 N -0.621 5.621 15 C 0.083 3.917 16 C 0.072 3.928 17 H 0.065 0.935 18 C -0.141 4.141 19 O -0.382 6.382 20 C 0.057 3.943 21 C 0.098 3.902 22 H 0.101 0.899 23 C -0.152 4.152 24 H 0.009 0.991 25 H 0.091 0.909 26 H 0.038 0.962 27 H 0.263 0.737 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 1.770 7.810 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.325 3.675 13 O -0.440 6.440 14 N -0.356 5.356 15 C -0.041 4.041 16 C 0.014 3.986 17 H 0.083 0.917 18 C -0.198 4.198 19 O -0.301 6.301 20 C -0.020 4.020 21 C -0.006 4.006 22 H 0.119 0.881 23 C -0.210 4.210 24 H 0.028 0.972 25 H 0.109 0.891 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.360 1.460 7.999 11.662 hybrid contribution 0.094 -0.561 -0.943 1.101 sum 8.454 0.899 7.056 11.049 Atomic orbital electron populations 1.21654 0.96106 0.99793 1.01010 1.18933 0.94680 0.96260 0.89113 0.93647 1.20786 1.31966 1.12623 0.89226 0.92460 1.24909 0.94786 0.94915 0.98963 1.69888 1.35985 1.22657 1.23710 0.86438 0.78771 0.79702 0.82587 1.19710 1.20768 1.20809 1.22029 0.77864 0.83105 0.84537 1.90515 1.57813 1.28947 1.66695 1.48371 1.25550 1.38751 1.22929 1.22431 0.90178 0.89811 1.01649 1.22510 0.93862 0.97218 0.84988 0.91673 1.21708 0.99253 0.97025 1.01833 1.87870 1.59203 1.48521 1.34468 1.22906 0.90769 0.88526 0.99848 1.21711 0.95653 0.97994 0.85262 0.88129 1.21987 1.02001 0.99809 0.97201 0.97232 0.89085 0.94241 0.92680 0.91865 0.86613 0.91918 0.91953 0.90430 0.88426 0.92929 0.92578 0.92095 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.78 37.16 0.33 -2.90 16 2 C 0.03 0.78 1.84 -92.93 -0.17 0.61 16 3 H 0.05 1.13 6.28 -51.93 -0.33 0.81 16 4 C -0.51 -13.62 8.40 -34.44 -0.29 -13.91 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 7 N -0.88 -23.98 11.29 55.43 0.63 -23.36 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.53 12.58 6.64 -10.99 -0.07 12.51 16 13 O -0.56 -14.70 15.64 5.55 0.09 -14.61 16 14 N -0.62 -12.06 2.71 -164.75 -0.45 -12.51 16 15 C 0.08 1.41 5.20 -3.53 -0.02 1.39 16 16 C 0.07 1.10 3.40 -26.58 -0.09 1.01 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.14 -1.71 9.57 37.16 0.36 -1.36 16 19 O -0.38 -5.79 10.01 -35.23 -0.35 -6.14 16 20 C 0.06 0.82 6.36 37.31 0.24 1.06 16 21 C 0.10 1.61 3.25 -67.42 -0.22 1.39 16 22 H 0.10 1.79 7.06 -51.93 -0.37 1.42 16 23 C -0.15 -2.11 9.24 37.16 0.34 -1.77 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 26 H 0.04 1.02 7.68 -51.93 -0.40 0.62 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.06 0.98 7.67 -51.93 -0.40 0.59 16 29 H 0.12 2.19 5.68 -51.93 -0.29 1.90 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.86 7.23 -51.93 -0.38 0.48 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -29.84 295.34 -6.16 -36.00 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.81 Total: 0.82 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.31 Total: -0.30 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.18 Total: -35.86 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.27 Total: -20.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.84 -6.16 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596753844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.779 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds