Wall clock time and date at job start Mon Mar 30 2020 04:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.50699 * 109.47081 * 239.99936 * 2 1 3 5 5 H 1.07995 * 120.00632 * 239.99929 * 4 2 1 6 6 C 1.37877 * 119.99856 * 60.00481 * 4 2 1 7 7 N 1.31519 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47108 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47674 * 119.99115 * 8 6 4 11 11 H 1.48498 * 109.47485 * 239.99777 * 8 6 4 12 12 C 1.50703 * 109.47380 * 120.00396 * 2 1 3 13 13 O 1.21286 * 119.99789 * 34.73098 * 12 2 1 14 14 N 1.34774 * 120.00015 * 214.74069 * 12 2 1 15 15 C 1.47153 * 120.98313 * 354.62917 * 14 12 2 16 16 C 1.53297 * 108.38700 * 230.51976 * 15 14 12 17 17 H 1.08994 * 109.51093 * 67.62054 * 16 15 14 18 18 C 1.52995 * 109.51106 * 187.77432 * 16 15 14 19 19 O 1.42968 * 109.22143 * 307.69675 * 16 15 14 20 20 C 1.42962 * 114.16263 * 62.57981 * 19 16 15 21 21 C 1.47153 * 120.98307 * 174.61644 * 14 12 2 22 22 H 1.09001 * 109.68374 * 9.71802 * 21 14 12 23 23 C 1.52999 * 109.67968 * 249.20332 * 21 14 12 24 24 H 1.09003 * 109.47027 * 304.90219 * 1 2 3 25 25 H 1.09002 * 109.47321 * 64.90554 * 1 2 3 26 26 H 1.09000 * 109.47205 * 184.90484 * 1 2 3 27 27 H 0.97000 * 119.99968 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.67940 * 110.79408 * 15 14 12 29 29 H 1.09003 * 109.68072 * 350.24117 * 15 14 12 30 30 H 1.08999 * 109.47201 * 60.00113 * 18 16 15 31 31 H 1.09005 * 109.46781 * 179.97438 * 18 16 15 32 32 H 1.09004 * 109.47118 * 299.99822 * 18 16 15 33 33 H 1.08999 * 109.51103 * 177.49230 * 20 19 16 34 34 H 1.09004 * 109.51475 * 57.34565 * 20 19 16 35 35 H 1.09000 * 109.47183 * 59.99929 * 23 21 14 36 36 H 1.08996 * 109.47042 * 179.97438 * 23 21 14 37 37 H 1.08998 * 109.47396 * 300.00219 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 6 2.0324 -0.7105 1.2304 13 8 1.4207 -1.6585 1.6755 14 7 3.1613 -0.2923 1.8363 15 6 3.9831 0.7787 1.2508 16 6 5.4369 0.2959 1.1929 17 1 5.5223 -0.5164 0.4712 18 6 6.3435 1.4536 0.7705 19 8 5.8297 -0.1710 2.4859 20 6 5.0803 -1.2944 2.9550 21 6 3.6083 -0.8930 3.1031 22 1 3.0070 -1.7751 3.3234 23 6 3.4633 0.1253 4.2357 24 1 -0.3633 0.5880 0.8428 25 1 -0.3634 0.4358 -0.9307 26 1 -0.3633 -1.0239 0.0879 27 1 0.7082 1.1610 -3.4844 28 1 3.9176 1.6725 1.8712 29 1 3.6306 1.0033 0.2441 30 1 6.2588 2.2642 1.4943 31 1 7.3770 1.1096 0.7300 32 1 6.0406 1.8120 -0.2134 33 1 5.4696 -1.6137 3.9217 34 1 5.1643 -2.1126 2.2396 35 1 2.4185 0.4227 4.3255 36 1 3.7948 -0.3232 5.1721 37 1 4.0729 1.0019 4.0164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596753844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:27 Heat of formation + Delta-G solvation = -108.504795 kcal Electronic energy + Delta-G solvation = -18685.634549 eV Core-core repulsion = 15847.989508 eV Total energy + Delta-G solvation = -2837.645041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47026 -39.44858 -35.98151 -35.85928 -34.40983 -32.46693 -31.13112 -27.35097 -27.31133 -27.25935 -25.03556 -23.00575 -21.52467 -19.74932 -18.49128 -18.37343 -17.62296 -16.94149 -16.51490 -16.19790 -15.88349 -15.52328 -14.97821 -14.62634 -14.38482 -13.80594 -13.63061 -13.20859 -13.17321 -13.11010 -12.99005 -12.83718 -12.70912 -12.54260 -12.38689 -12.22825 -12.10114 -12.04438 -11.48491 -11.14120 -11.03786 -10.63655 -10.30546 -9.47290 -8.19277 -6.35093 1.39110 1.42199 1.52479 1.82123 2.04302 2.42037 2.75512 3.09021 3.66980 3.82147 3.93961 4.05530 4.14016 4.30018 4.35637 4.51358 4.60785 4.64652 4.71531 4.75542 4.79298 4.91366 4.93856 4.98695 5.04695 5.08986 5.24983 5.32822 5.40126 5.57115 5.72239 5.83000 6.11449 6.14385 6.47340 6.67647 7.29177 7.38852 8.85920 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.008798 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.905712 B = 3181.689987 C = 3794.670112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.030 3.970 3 H 0.044 0.956 4 C -0.525 4.525 5 H 0.040 0.960 6 C 0.029 3.971 7 N -0.904 5.904 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.268 1.268 12 C 0.528 3.472 13 O -0.597 6.597 14 N -0.617 5.617 15 C 0.081 3.919 16 C 0.076 3.924 17 H 0.047 0.953 18 C -0.134 4.134 19 O -0.378 6.378 20 C 0.061 3.939 21 C 0.089 3.911 22 H 0.084 0.916 23 C -0.142 4.142 24 H 0.024 0.976 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.268 0.732 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.092 0.908 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.450 2.330 8.371 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.009 3.991 3 H 0.062 0.938 4 C -0.563 4.563 5 H 0.059 0.941 6 C -0.172 4.172 7 N -0.542 5.542 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.193 1.193 12 C 0.320 3.680 13 O -0.478 6.478 14 N -0.350 5.350 15 C -0.042 4.042 16 C 0.017 3.983 17 H 0.065 0.935 18 C -0.192 4.192 19 O -0.296 6.296 20 C -0.017 4.017 21 C -0.014 4.014 22 H 0.102 0.898 23 C -0.200 4.200 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.198 2.052 8.577 13.482 hybrid contribution -0.463 -0.719 -1.076 1.375 sum 9.735 1.333 7.500 12.361 Atomic orbital electron populations 1.21525 0.96660 0.98747 1.00811 1.18854 0.94352 0.96223 0.89716 0.93767 1.20845 1.32465 1.12478 0.90504 0.94128 1.25572 0.94759 0.95493 1.01345 1.69961 1.36253 1.23360 1.24621 0.85517 0.78302 0.78694 0.79240 1.20038 1.20557 1.19285 1.21701 0.79085 0.82803 0.84422 1.90485 1.59352 1.30357 1.67651 1.48376 1.24306 1.38673 1.23682 1.22568 0.90958 0.89960 1.00713 1.22504 0.93106 0.97788 0.84877 0.93475 1.21698 0.99144 0.96044 1.02290 1.87889 1.59008 1.48605 1.34133 1.23006 0.89307 0.87900 1.01464 1.22020 0.96728 0.98130 0.84501 0.89828 1.21925 1.01397 0.99281 0.97398 0.95714 0.90518 0.95907 0.92238 0.89820 0.88842 0.90632 0.90605 0.90068 0.84608 0.94104 0.93928 0.88894 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.19 8.78 71.98 0.63 -5.55 16 2 C 0.03 1.52 1.84 -12.29 -0.02 1.49 16 3 H 0.04 2.26 6.28 -2.39 -0.01 2.24 16 4 C -0.52 -28.76 8.40 25.60 0.22 -28.54 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.28 16 6 C 0.03 1.55 5.29 84.65 0.45 1.99 16 7 N -0.90 -49.16 11.29 21.45 0.24 -48.92 16 8 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 C 0.53 25.52 6.64 87.66 0.58 26.10 16 13 O -0.60 -32.13 15.64 -3.05 -0.05 -32.18 16 14 N -0.62 -23.91 2.71 -793.52 -2.15 -26.07 16 15 C 0.08 2.69 5.20 86.35 0.45 3.14 16 16 C 0.08 2.19 3.40 30.69 0.10 2.29 16 17 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 18 C -0.13 -2.94 9.57 71.98 0.69 -2.25 16 19 O -0.38 -10.44 10.01 -148.98 -1.49 -11.93 16 20 C 0.06 1.61 6.36 72.08 0.46 2.06 16 21 C 0.09 2.83 3.25 44.96 0.15 2.97 16 22 H 0.08 2.96 7.06 -2.39 -0.02 2.94 16 23 C -0.14 -3.61 9.24 71.98 0.67 -2.95 16 24 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 4.17 5.95 -2.39 -0.01 4.16 16 26 H 0.02 1.20 7.68 -2.39 -0.02 1.18 16 27 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.08 2.46 7.67 -2.39 -0.02 2.44 16 29 H 0.09 3.57 5.68 -2.39 -0.01 3.56 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.04 1.18 8.14 -2.38 -0.02 1.17 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.64 7.23 -2.39 -0.02 1.63 16 Total: -1.00 -64.23 295.34 3.98 -60.24 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.04 Total: 13.74 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 4.37 Total: 0.76 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.91 Total: -74.98 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.54 Total: -44.12 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -64.23 3.98 -60.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596753844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.260 kcal (2) G-P(sol) polarization free energy of solvation -64.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds