Wall clock time and date at job start Mon Mar 30 2020 04:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46968 * 2 1 4 4 C 1.50695 * 109.47170 * 119.99763 * 2 1 3 5 5 H 1.08006 * 119.99445 * 120.00166 * 4 2 1 6 6 C 1.37879 * 120.00469 * 300.00344 * 4 2 1 7 7 N 1.31510 * 119.99668 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47220 * 59.99945 * 8 6 4 10 10 H 1.48505 * 109.47224 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47079 * 299.99752 * 8 6 4 12 12 C 1.50702 * 109.47191 * 240.00504 * 2 1 3 13 13 O 1.21281 * 119.99600 * 239.99715 * 12 2 1 14 14 N 1.34769 * 120.00232 * 59.99758 * 12 2 1 15 15 C 1.47514 * 118.75689 * 359.97438 * 14 12 2 16 16 C 1.53574 * 111.02781 * 138.39841 * 15 14 12 17 17 C 1.51538 * 109.58138 * 320.01824 * 16 15 14 18 18 O 1.42152 * 108.74978 * 91.40672 * 17 16 15 19 19 C 1.38023 * 119.43751 * 272.76145 * 18 17 16 20 20 C 1.45124 * 118.75690 * 179.97438 * 14 12 2 21 21 H 1.09001 * 109.45648 * 29.27808 * 20 14 12 22 22 C 1.52999 * 109.45938 * 149.23147 * 20 14 12 23 23 H 1.08998 * 109.47336 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47508 * 299.99645 * 1 2 3 25 25 H 1.09005 * 109.47389 * 60.00079 * 1 2 3 26 26 H 0.97003 * 120.00311 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.16815 * 258.79059 * 15 14 12 28 28 H 1.08994 * 109.16646 * 18.00013 * 15 14 12 29 29 H 1.08996 * 109.45511 * 80.05508 * 16 15 14 30 30 H 1.09004 * 109.44781 * 199.98896 * 16 15 14 31 31 H 1.09005 * 109.58995 * 211.18147 * 17 16 15 32 32 H 1.08989 * 109.59376 * 331.47730 * 17 16 15 33 33 H 1.08995 * 109.47004 * 303.43314 * 19 18 17 34 34 H 1.08996 * 109.47050 * 183.43739 * 19 18 17 35 35 H 1.09005 * 109.46753 * 80.19859 * 22 20 14 36 36 H 1.09001 * 109.47177 * 200.19841 * 22 20 14 37 37 H 1.08999 * 109.47336 * 320.20001 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9426 0.8296 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.8063 -1.1209 4.0081 10 1 1.8259 -0.4206 5.2205 11 1 1.8257 -2.5202 4.0076 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.8566 0.9513 -2.5580 16 6 1.3595 1.8886 -3.6657 17 6 2.8742 1.9320 -3.6454 18 8 3.3718 0.9303 -4.5227 19 6 3.5654 -0.3514 -4.0485 20 6 2.2057 -0.9544 -3.6211 21 1 2.3365 -2.0093 -3.3797 22 6 1.2031 -0.8148 -4.7683 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7079 1.1608 3.4844 27 1 -0.1658 0.6478 -2.7829 28 1 0.8703 1.4823 -1.6063 29 1 1.0198 1.5213 -4.6340 30 1 0.9654 2.8912 -3.4994 31 1 3.2162 2.9120 -3.9783 32 1 3.2317 1.7447 -2.6330 33 1 4.2364 -0.3236 -3.1900 34 1 4.0052 -0.9666 -4.8334 35 1 1.3305 0.1567 -5.2460 36 1 1.3754 -1.6046 -5.4995 37 1 0.1892 -0.8971 -4.3768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597418183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:11 Heat of formation + Delta-G solvation = -89.420718 kcal Electronic energy + Delta-G solvation = -18892.894635 eV Core-core repulsion = 16056.077141 eV Total energy + Delta-G solvation = -2836.817494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76651 -39.55544 -36.60587 -35.94523 -34.19165 -32.74062 -31.01257 -27.80141 -27.29038 -26.76083 -24.86880 -22.32202 -21.91036 -20.08726 -18.41822 -17.91680 -17.54493 -17.40541 -17.05378 -16.56664 -15.85687 -15.46159 -15.16130 -14.41934 -14.32441 -14.05453 -13.88706 -13.38423 -13.17518 -12.96029 -12.83537 -12.75701 -12.62791 -12.32329 -12.24633 -12.09049 -12.02903 -11.87811 -11.17432 -11.07244 -10.62957 -10.56521 -10.24010 -9.48406 -8.17760 -6.28096 1.38070 1.39482 1.48137 1.85986 2.13828 2.43273 2.80486 3.11339 3.78504 3.83774 3.92184 4.07360 4.20374 4.30331 4.34335 4.51673 4.63877 4.65378 4.70930 4.81465 4.84352 4.87014 4.93476 4.99072 5.03168 5.11375 5.15994 5.40513 5.48402 5.70223 5.80516 5.95197 6.17739 6.48316 6.61894 6.79539 7.36862 7.47341 8.87827 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036760 B = 0.007162 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.509397 B = 3908.391972 C = 4101.395794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.030 3.970 3 H 0.038 0.962 4 C -0.533 4.533 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.277 1.277 12 C 0.512 3.488 13 O -0.589 6.589 14 N -0.609 5.609 15 C 0.097 3.903 16 C -0.163 4.163 17 C 0.066 3.934 18 O -0.387 6.387 19 C 0.073 3.927 20 C 0.093 3.907 21 H 0.068 0.932 22 C -0.150 4.150 23 H 0.016 0.984 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.266 0.734 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.025 0.975 33 H 0.011 0.989 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 4.155 -14.947 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 H 0.056 0.944 4 C -0.571 4.571 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.203 1.203 12 C 0.303 3.697 13 O -0.469 6.469 14 N -0.343 5.343 15 C -0.024 4.024 16 C -0.201 4.201 17 C -0.010 4.010 18 O -0.305 6.305 19 C -0.006 4.006 20 C -0.011 4.011 21 H 0.087 0.913 22 C -0.207 4.207 23 H 0.035 0.965 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.386 3.812 -14.949 15.489 hybrid contribution 0.387 -0.791 1.673 1.890 sum -1.000 3.022 -13.276 13.652 Atomic orbital electron populations 1.21849 0.95020 0.99342 1.02484 1.18726 0.95401 0.95497 0.89478 0.94412 1.21257 1.31747 1.12774 0.91316 0.93726 1.25569 0.95163 0.95765 1.01294 1.69924 1.36963 1.23442 1.24415 0.85682 0.78630 0.78758 0.78982 1.20298 1.19605 1.20293 1.21766 0.78263 0.83739 0.85940 1.90482 1.40178 1.28910 1.87326 1.48213 1.51815 1.29426 1.04846 1.22329 0.93965 0.85086 1.01016 1.22695 0.96253 1.01232 0.99910 1.22376 0.93968 0.91626 0.93012 1.86203 1.85053 1.18310 1.40970 1.22431 0.94608 0.84422 0.99132 1.21994 0.96008 0.96700 0.86414 0.91337 1.22163 0.97478 1.04622 0.96423 0.96507 0.91033 0.91602 0.92499 0.90146 0.89958 0.88056 0.87024 0.86712 0.95633 0.97023 0.85722 0.89239 0.90178 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.48 71.98 0.61 -5.34 16 2 C 0.03 1.54 1.81 -12.29 -0.02 1.52 16 3 H 0.04 2.01 7.41 -2.39 -0.02 2.00 16 4 C -0.53 -31.58 8.37 25.60 0.21 -31.36 16 5 H 0.04 2.84 6.75 -2.91 -0.02 2.82 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -51.12 11.32 21.45 0.24 -50.87 16 8 Si 0.95 45.53 29.54 68.60 2.03 47.55 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 C 0.51 24.48 7.03 87.66 0.62 25.10 16 13 O -0.59 -32.60 14.89 -3.03 -0.05 -32.65 16 14 N -0.61 -21.84 2.12 -793.99 -1.68 -23.52 16 15 C 0.10 2.74 3.65 86.38 0.32 3.05 16 16 C -0.16 -3.36 5.55 30.31 0.17 -3.19 16 17 C 0.07 1.62 6.37 71.50 0.46 2.07 16 18 O -0.39 -10.25 8.92 -117.96 -1.05 -11.30 16 19 C 0.07 2.10 6.36 72.58 0.46 2.56 16 20 C 0.09 2.86 2.82 45.85 0.13 2.99 16 21 H 0.07 2.44 7.27 -2.39 -0.02 2.43 16 22 C -0.15 -3.30 8.22 71.98 0.59 -2.70 16 23 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 25 H 0.07 2.42 4.61 -2.38 -0.01 2.41 16 26 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.08 1.99 7.18 -2.39 -0.02 1.97 16 28 H 0.08 2.63 4.96 -2.39 -0.01 2.62 16 29 H 0.10 1.82 5.20 -2.39 -0.01 1.80 16 30 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.03 0.79 7.41 -2.39 -0.02 0.77 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.09 1.77 4.34 -2.38 -0.01 1.76 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.33 7.55 -2.39 -0.02 1.31 16 Total: -1.00 -69.26 277.98 4.55 -64.71 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.07 Total: 9.71 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 3.99 Total: -3.63 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -1.44 Total: -74.39 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.10 Total: -43.95 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -69.26 4.55 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597418183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.711 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds