Wall clock time and date at job start Mon Mar 30 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46958 * 2 1 4 4 C 1.50703 * 109.47100 * 239.99875 * 2 1 3 5 5 H 1.07994 * 120.00143 * 241.72019 * 4 2 1 6 6 C 1.37879 * 119.99737 * 61.71288 * 4 2 1 7 7 N 1.31514 * 120.00328 * 8.82242 * 6 4 2 8 8 Si 1.86799 * 119.99900 * 188.81524 * 6 4 2 9 9 H 1.48492 * 109.47109 * 60.00397 * 8 6 4 10 10 H 1.48502 * 109.47087 * 300.00386 * 8 6 4 11 11 H 1.48504 * 109.47270 * 180.02562 * 8 6 4 12 12 C 1.50695 * 109.47208 * 120.00066 * 2 1 3 13 13 O 1.21284 * 120.00177 * 76.99442 * 12 2 1 14 14 N 1.34776 * 120.00352 * 257.00012 * 12 2 1 15 15 C 1.43433 * 120.62909 * 4.20305 * 14 12 2 16 16 C 1.54783 * 116.57525 * 269.49134 * 15 14 12 17 17 C 1.55192 * 108.80115 * 319.49641 * 16 15 14 18 18 O 1.39646 * 110.56906 * 322.07253 * 17 16 15 19 19 C 1.42376 * 108.63604 * 101.17421 * 18 17 16 20 20 C 1.46928 * 113.78537 * 267.45653 * 19 18 17 21 21 H 1.08993 * 109.99066 * 297.48704 * 20 19 18 22 22 C 1.52998 * 109.98535 * 176.11916 * 20 19 18 23 23 H 1.09008 * 109.47215 * 183.41490 * 1 2 3 24 24 H 1.09003 * 109.47338 * 303.41547 * 1 2 3 25 25 H 1.08996 * 109.47511 * 63.41369 * 1 2 3 26 26 H 0.97009 * 119.99528 * 5.44258 * 7 6 4 27 27 H 1.08997 * 108.12803 * 31.11476 * 15 14 12 28 28 H 1.08997 * 108.12432 * 147.59881 * 15 14 12 29 29 H 1.09004 * 109.66515 * 199.66831 * 16 15 14 30 30 H 1.08997 * 109.65156 * 79.31463 * 16 15 14 31 31 H 1.09007 * 109.25633 * 201.79233 * 17 16 15 32 32 H 1.08994 * 109.26060 * 82.35232 * 17 16 15 33 33 H 1.08991 * 108.62042 * 146.34544 * 19 18 17 34 34 H 1.09005 * 108.50886 * 28.48653 * 19 18 17 35 35 H 1.08996 * 109.47356 * 308.20056 * 22 20 19 36 36 H 1.08998 * 109.47417 * 68.20850 * 22 20 19 37 37 H 1.09009 * 109.46636 * 188.20205 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6301 -1.6044 -1.1316 6 6 1.7286 -0.2191 -2.4824 7 7 1.1525 0.9567 -2.6055 8 14 2.1356 -1.2235 -4.0039 9 1 1.4197 -2.5231 -3.9453 10 1 3.5995 -1.4669 -4.0594 11 1 1.7118 -0.4787 -5.2168 12 6 2.0323 -0.7104 1.2304 13 8 2.0116 -1.9220 1.2821 14 7 2.5045 0.0005 2.2735 15 6 2.4527 1.4339 2.2643 16 6 3.6826 2.1675 1.6770 17 6 4.9704 1.4414 2.1487 18 8 4.8317 1.0035 3.4675 19 6 4.5381 -0.3896 3.4558 20 6 3.1003 -0.6923 3.4645 21 1 2.6458 -0.3156 4.3807 22 6 2.8832 -2.2027 3.3536 23 1 -0.3634 -1.0259 0.0612 24 1 -0.3634 0.5659 0.8578 25 1 -0.3634 0.4599 -0.9189 26 1 1.0128 1.5126 -1.8228 27 1 1.5771 1.7379 1.6907 28 1 2.3141 1.7748 3.2903 29 1 3.6961 3.1995 2.0277 30 1 3.6330 2.1525 0.5883 31 1 5.8144 2.1284 2.0849 32 1 5.1565 0.5834 1.5028 33 1 4.9957 -0.8491 4.3318 34 1 4.9809 -0.8291 2.5620 35 1 3.4427 -2.5887 2.5016 36 1 3.2302 -2.6876 4.2661 37 1 1.8217 -2.4079 3.2143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597418187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:16 Heat of formation + Delta-G solvation = -89.478364 kcal Electronic energy + Delta-G solvation = -18996.123733 eV Core-core repulsion = 16159.303740 eV Total energy + Delta-G solvation = -2836.819993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81404 -39.70744 -36.53172 -36.37200 -34.75892 -32.23551 -30.92661 -27.92489 -27.19994 -26.39114 -25.00939 -22.65721 -22.52423 -20.17662 -18.74477 -17.94793 -17.85203 -17.40787 -16.59971 -15.93605 -15.77836 -15.64195 -15.21352 -14.83790 -14.50674 -14.06265 -13.81521 -13.43627 -13.21994 -13.08223 -13.02731 -12.83629 -12.69228 -12.57531 -12.43264 -12.17204 -11.94678 -11.90362 -11.67030 -10.75218 -10.71339 -10.47951 -9.87229 -9.58830 -8.62872 -6.33909 1.51325 1.57488 1.76826 1.81226 2.02430 2.55294 2.89386 3.13967 3.74817 3.80081 3.96480 3.99965 4.09086 4.19449 4.28112 4.36499 4.43830 4.52582 4.56677 4.67745 4.71482 4.76125 4.78734 4.87662 4.92196 5.02290 5.03919 5.18029 5.34553 5.45201 5.68368 5.91738 6.06935 6.16849 6.46486 6.68558 7.32469 7.43828 8.75033 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.008327 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.213935 B = 3361.839753 C = 3608.760788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.010 3.990 3 H 0.040 0.960 4 C -0.598 4.598 5 H 0.031 0.969 6 C -0.015 4.015 7 N -0.922 5.922 8 Si 1.104 2.896 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.529 3.471 13 O -0.570 6.570 14 N -0.615 5.615 15 C 0.110 3.890 16 C -0.162 4.162 17 C 0.055 3.945 18 O -0.356 6.356 19 C 0.041 3.959 20 C 0.113 3.887 21 H 0.105 0.895 22 C -0.122 4.122 23 H 0.030 0.970 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.264 0.736 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.119 0.881 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 2.229 12.434 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 H 0.058 0.942 4 C -0.636 4.636 5 H 0.049 0.951 6 C -0.214 4.214 7 N -0.559 5.559 8 Si 0.927 3.073 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.450 6.450 14 N -0.350 5.350 15 C -0.014 4.014 16 C -0.201 4.201 17 C -0.023 4.023 18 O -0.273 6.273 19 C -0.037 4.037 20 C 0.012 3.988 21 H 0.123 0.877 22 C -0.180 4.180 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.627 1.688 11.015 12.484 hybrid contribution -0.088 -0.080 1.078 1.085 sum 5.540 1.608 12.093 13.398 Atomic orbital electron populations 1.21601 0.96305 0.99783 1.00566 1.19019 0.94247 0.96619 0.91271 0.94226 1.21898 1.36910 1.12338 0.92451 0.95055 1.26932 0.93461 0.97458 1.03582 1.70905 1.41308 1.09897 1.33765 0.83086 0.76963 0.74393 0.72835 1.20627 1.20009 1.20091 1.21249 0.75428 0.87519 0.83769 1.90561 1.56995 1.15702 1.81710 1.48344 1.61631 1.07003 1.17973 1.21007 0.98197 0.79408 1.02788 1.23288 0.95168 1.01073 1.00551 1.22622 0.97567 0.98855 0.83213 1.87624 1.90413 1.23521 1.25788 1.22045 0.95188 0.82735 1.03700 1.21553 0.94406 0.94501 0.88354 0.87699 1.21865 1.02480 0.92485 1.01127 0.95072 0.93283 0.92834 0.92521 0.91926 0.88992 0.87647 0.92745 0.88353 0.94598 0.86311 0.93927 0.93740 0.90164 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.85 71.98 0.64 -5.30 16 2 C 0.01 0.49 1.54 -12.29 -0.02 0.47 16 3 H 0.04 1.97 4.84 -2.39 -0.01 1.96 16 4 C -0.60 -34.48 8.30 25.60 0.21 -34.27 16 5 H 0.03 1.92 7.44 -2.91 -0.02 1.90 16 6 C -0.01 -0.82 5.17 84.66 0.44 -0.38 16 7 N -0.92 -53.47 12.70 21.45 0.27 -53.19 16 8 Si 1.10 50.99 29.91 68.60 2.05 53.04 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.53 24.38 6.50 87.66 0.57 24.94 16 13 O -0.57 -29.12 12.00 -3.04 -0.04 -29.15 16 14 N -0.62 -22.05 2.59 -803.19 -2.08 -24.14 16 15 C 0.11 3.38 4.51 87.55 0.39 3.78 16 16 C -0.16 -4.57 6.63 31.95 0.21 -4.35 16 17 C 0.06 1.49 6.38 72.73 0.46 1.96 16 18 O -0.36 -9.39 10.24 -137.25 -1.41 -10.80 16 19 C 0.04 1.05 5.28 70.10 0.37 1.42 16 20 C 0.11 3.25 3.42 42.40 0.14 3.40 16 21 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 22 C -0.12 -3.80 7.63 71.98 0.55 -3.25 16 23 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 2.72 6.10 -2.39 -0.01 2.70 16 26 H 0.26 15.11 6.23 -92.70 -0.58 14.53 16 27 H 0.06 2.06 6.46 -2.39 -0.02 2.04 16 28 H 0.09 2.34 7.99 -2.39 -0.02 2.32 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.05 1.83 7.41 -2.39 -0.02 1.81 16 31 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.04 1.14 6.66 -2.39 -0.02 1.12 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.04 1.27 6.67 -2.38 -0.02 1.25 16 35 H 0.04 1.65 6.74 -2.39 -0.02 1.63 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.81 6.84 -2.38 -0.02 1.80 16 Total: -1.00 -67.07 283.32 4.02 -63.06 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.24 Total: 12.77 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 3.97 Total: -11.59 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -1.81 Total: -77.33 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.44 Total: -39.95 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -67.07 4.02 -63.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597418187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.421 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds