Wall clock time and date at job start Mon Mar 30 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46863 * 2 1 4 4 C 1.50697 * 109.47349 * 239.99800 * 2 1 3 5 5 H 1.07997 * 120.00280 * 239.99923 * 4 2 1 6 6 C 1.37883 * 119.99627 * 59.99673 * 4 2 1 7 7 N 1.31509 * 120.00368 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99686 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46829 * 120.00328 * 8 6 4 11 11 H 1.48502 * 109.47485 * 240.00300 * 8 6 4 12 12 C 1.50699 * 109.46868 * 119.99934 * 2 1 3 13 13 O 1.21282 * 119.99999 * 120.00539 * 12 2 1 14 14 N 1.34772 * 120.00104 * 299.99640 * 12 2 1 15 15 C 1.47424 * 125.65193 * 359.96585 * 14 12 2 16 16 C 1.54901 * 104.83653 * 204.16298 * 15 14 12 17 17 C 1.55165 * 101.58123 * 322.98894 * 16 15 14 18 18 H 1.09006 * 110.86676 * 277.06773 * 17 16 15 19 19 C 1.52997 * 110.72224 * 153.86707 * 17 16 15 20 20 C 1.47025 * 125.64949 * 180.02562 * 14 12 2 21 21 H 1.08995 * 109.88500 * 298.32844 * 20 14 12 22 22 C 1.53003 * 109.87991 * 59.49190 * 20 14 12 23 23 O 1.42898 * 109.47104 * 292.80660 * 22 20 14 24 24 H 1.08997 * 109.46974 * 59.99837 * 1 2 3 25 25 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47173 * 299.99998 * 1 2 3 27 27 H 0.97000 * 120.00699 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.36225 * 322.99999 * 15 14 12 29 29 H 1.08996 * 110.37067 * 85.20648 * 15 14 12 30 30 H 1.09001 * 111.00929 * 204.91831 * 16 15 14 31 31 H 1.09004 * 111.01041 * 81.05836 * 16 15 14 32 32 H 1.09002 * 109.47153 * 306.47558 * 19 17 16 33 33 H 1.09001 * 109.46832 * 186.47749 * 19 17 16 34 34 H 1.09004 * 109.47261 * 66.47730 * 19 17 16 35 35 H 1.08994 * 109.47281 * 52.81162 * 22 20 14 36 36 H 1.09006 * 109.46754 * 172.80896 * 22 20 14 37 37 H 0.96704 * 113.99849 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1476 -2.2863 -3.6037 10 1 1.1678 -1.5867 -4.8164 11 1 3.1473 -0.1858 -4.8161 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 0.8717 0.9325 2.7337 16 6 1.2966 1.3927 4.1504 17 6 1.5405 0.0341 4.8592 18 1 0.6041 -0.3854 5.2273 19 6 2.5465 0.1920 6.0010 20 6 2.1266 -0.8428 3.7327 21 1 1.7402 -1.8587 3.8149 22 6 3.6539 -0.8550 3.8239 23 8 4.1818 -1.7600 2.8521 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7094 1.1617 -3.4844 28 1 1.0702 1.7178 2.0043 29 1 -0.1843 0.6627 2.7215 30 1 0.4957 1.9490 4.6373 31 1 2.2123 1.9828 4.1114 32 1 3.4537 0.6636 5.6233 33 1 2.7897 -0.7890 6.4092 34 1 2.1127 0.8140 6.7841 35 1 4.0373 0.1473 3.6331 36 1 3.9558 -1.1759 4.8209 37 1 5.1471 -1.8184 2.8525 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597544267.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:32 Heat of formation + Delta-G solvation = -83.446050 kcal Electronic energy + Delta-G solvation = -18580.295322 eV Core-core repulsion = 15743.736909 eV Total energy + Delta-G solvation = -2836.558412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79606 -37.10193 -35.74977 -33.62908 -32.63015 -30.28042 -29.89770 -26.86767 -25.10258 -24.32630 -23.07618 -21.44022 -19.41384 -18.34913 -17.11746 -16.19272 -15.66122 -15.43173 -15.13706 -14.43439 -13.94749 -13.52756 -13.28880 -13.15819 -12.89783 -12.56890 -12.32765 -12.00705 -11.76469 -11.40358 -11.22203 -10.92281 -10.81656 -10.69200 -10.58097 -10.36600 -10.33229 -10.10762 -9.85807 -9.45600 -8.83590 -8.40164 -8.09009 -7.81163 -5.94633 -3.96544 3.37402 3.44418 3.53573 3.80197 4.00288 4.40215 4.54720 4.66458 4.78296 4.98093 5.33834 5.38568 5.40825 5.46721 5.50044 5.59712 5.63714 5.76176 5.84331 5.99807 6.02079 6.10519 6.20530 6.35110 6.37926 6.75355 6.93911 7.05238 7.18202 7.61140 7.86426 8.11442 8.15541 8.30552 8.62674 9.13537 9.54071 9.69526 11.13200 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036753 B = 0.007095 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.665623 B = 3945.423046 C = 4514.519204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.035 3.965 3 H 0.046 0.954 4 C -0.494 4.494 5 H 0.074 0.926 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.525 3.475 13 O -0.502 6.502 14 N -0.628 5.628 15 C 0.105 3.895 16 C -0.131 4.131 17 C -0.098 4.098 18 H 0.085 0.915 19 C -0.144 4.144 20 C 0.140 3.860 21 H 0.069 0.931 22 C 0.066 3.934 23 O -0.529 6.529 24 H 0.090 0.910 25 H 0.028 0.972 26 H 0.019 0.981 27 H 0.258 0.742 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 2.543 16.068 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.064 0.936 4 C -0.533 4.533 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.315 3.685 13 O -0.373 6.373 14 N -0.367 5.367 15 C -0.019 4.019 16 C -0.169 4.169 17 C -0.117 4.117 18 H 0.104 0.896 19 C -0.202 4.202 20 C 0.036 3.964 21 H 0.087 0.913 22 C -0.013 4.013 23 O -0.331 6.331 24 H 0.109 0.891 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.585 1.959 15.594 15.728 hybrid contribution 0.771 -0.175 -0.622 1.006 sum 1.357 1.784 14.973 15.139 Atomic orbital electron populations 1.21855 0.96881 0.99720 1.01104 1.18806 0.93998 0.96496 0.89299 0.93608 1.21236 1.30417 1.12612 0.89031 0.90765 1.24951 0.95260 0.95132 0.99052 1.69887 1.37516 1.23268 1.23221 0.86423 0.78590 0.79806 0.82587 1.19570 1.21129 1.21146 1.21717 0.79062 0.84893 0.82804 1.90615 1.35854 1.25852 1.85027 1.48901 1.53265 1.29691 1.04809 1.22274 0.94966 0.88875 0.95775 1.22920 1.02006 0.96323 0.95648 1.22179 0.99271 0.95903 0.94342 0.89644 1.21866 0.99012 1.01781 0.97517 1.21373 0.92820 0.97441 0.84775 0.91250 1.22656 0.94655 0.92896 0.91128 1.87097 1.23788 1.64323 1.57911 0.89122 0.95321 0.96228 0.93178 0.90343 0.91782 0.90251 0.90818 0.92162 0.92318 0.92343 0.94357 0.93816 0.79690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.78 37.16 0.33 -3.01 16 2 C 0.04 0.92 1.99 -92.92 -0.18 0.74 16 3 H 0.05 1.25 7.85 -51.93 -0.41 0.85 16 4 C -0.49 -14.63 8.37 -34.44 -0.29 -14.92 16 5 H 0.07 2.33 6.75 -52.49 -0.35 1.98 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.98 11.32 55.43 0.63 -25.36 16 8 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 C 0.52 12.92 6.96 -10.99 -0.08 12.84 16 13 O -0.50 -13.91 12.58 -18.80 -0.24 -14.15 16 14 N -0.63 -12.13 3.08 -163.03 -0.50 -12.63 16 15 C 0.10 1.61 5.14 -2.53 -0.01 1.60 16 16 C -0.13 -1.49 6.53 -24.58 -0.16 -1.65 16 17 C -0.10 -1.11 3.48 -88.78 -0.31 -1.42 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.14 -1.29 7.93 37.16 0.29 -0.99 16 20 C 0.14 2.26 3.26 -66.95 -0.22 2.04 16 21 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 22 C 0.07 1.01 5.36 37.16 0.20 1.21 16 23 O -0.53 -10.01 10.22 -59.59 -0.61 -10.62 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.39 4.99 -51.93 -0.26 0.13 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.08 1.28 7.36 -51.93 -0.38 0.90 16 29 H 0.06 0.95 7.07 -51.93 -0.37 0.58 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 32 H 0.06 0.55 6.72 -51.93 -0.35 0.20 16 33 H 0.06 0.50 7.56 -51.93 -0.39 0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.58 7.83 -51.93 -0.41 0.17 16 36 H 0.04 0.53 6.31 -51.93 -0.33 0.21 16 37 H 0.36 5.10 9.12 45.56 0.42 5.52 16 LS Contribution 285.82 15.07 4.31 4.31 Total: -1.00 -34.23 285.82 -6.77 -41.00 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.81 Total: 2.04 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.52 Total: -2.05 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.13 Total: -37.99 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.85 Total: -24.77 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.23 -6.77 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597544267.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.447 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds