Wall clock time and date at job start Mon Mar 30 2020 04:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46863 * 2 1 4 4 C 1.50697 * 109.47349 * 239.99800 * 2 1 3 5 5 H 1.07997 * 120.00280 * 239.99923 * 4 2 1 6 6 C 1.37883 * 119.99627 * 59.99673 * 4 2 1 7 7 N 1.31509 * 120.00368 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99686 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46829 * 120.00328 * 8 6 4 11 11 H 1.48502 * 109.47485 * 240.00300 * 8 6 4 12 12 C 1.50699 * 109.46868 * 119.99934 * 2 1 3 13 13 O 1.21282 * 119.99999 * 120.00539 * 12 2 1 14 14 N 1.34772 * 120.00104 * 299.99640 * 12 2 1 15 15 C 1.47424 * 125.65193 * 359.96585 * 14 12 2 16 16 C 1.54901 * 104.83653 * 204.16298 * 15 14 12 17 17 C 1.55165 * 101.58123 * 322.98894 * 16 15 14 18 18 H 1.09006 * 110.86676 * 277.06773 * 17 16 15 19 19 C 1.52997 * 110.72224 * 153.86707 * 17 16 15 20 20 C 1.47025 * 125.64949 * 180.02562 * 14 12 2 21 21 H 1.08995 * 109.88500 * 298.32844 * 20 14 12 22 22 C 1.53003 * 109.87991 * 59.49190 * 20 14 12 23 23 O 1.42898 * 109.47104 * 292.80660 * 22 20 14 24 24 H 1.08997 * 109.46974 * 59.99837 * 1 2 3 25 25 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47173 * 299.99998 * 1 2 3 27 27 H 0.97000 * 120.00699 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.36225 * 322.99999 * 15 14 12 29 29 H 1.08996 * 110.37067 * 85.20648 * 15 14 12 30 30 H 1.09001 * 111.00929 * 204.91831 * 16 15 14 31 31 H 1.09004 * 111.01041 * 81.05836 * 16 15 14 32 32 H 1.09002 * 109.47153 * 306.47558 * 19 17 16 33 33 H 1.09001 * 109.46832 * 186.47749 * 19 17 16 34 34 H 1.09004 * 109.47261 * 66.47730 * 19 17 16 35 35 H 1.08994 * 109.47281 * 52.81162 * 22 20 14 36 36 H 1.09006 * 109.46754 * 172.80896 * 22 20 14 37 37 H 0.96704 * 113.99849 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1476 -2.2863 -3.6037 10 1 1.1678 -1.5867 -4.8164 11 1 3.1473 -0.1858 -4.8161 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 0.8717 0.9325 2.7337 16 6 1.2966 1.3927 4.1504 17 6 1.5405 0.0341 4.8592 18 1 0.6041 -0.3854 5.2273 19 6 2.5465 0.1920 6.0010 20 6 2.1266 -0.8428 3.7327 21 1 1.7402 -1.8587 3.8149 22 6 3.6539 -0.8550 3.8239 23 8 4.1818 -1.7600 2.8521 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7094 1.1617 -3.4844 28 1 1.0702 1.7178 2.0043 29 1 -0.1843 0.6627 2.7215 30 1 0.4957 1.9490 4.6373 31 1 2.2123 1.9828 4.1114 32 1 3.4537 0.6636 5.6233 33 1 2.7897 -0.7890 6.4092 34 1 2.1127 0.8140 6.7841 35 1 4.0373 0.1473 3.6331 36 1 3.9558 -1.1759 4.8209 37 1 5.1471 -1.8184 2.8525 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597544267.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:31 Heat of formation + Delta-G solvation = -107.766178 kcal Electronic energy + Delta-G solvation = -18581.349922 eV Core-core repulsion = 15743.736909 eV Total energy + Delta-G solvation = -2837.613012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22441 -38.75945 -37.09726 -35.73224 -34.04079 -32.21064 -31.15391 -28.06623 -27.23382 -25.51001 -24.68824 -22.98150 -20.71959 -19.77743 -18.45878 -18.30174 -17.32740 -16.91406 -16.81342 -16.20412 -15.30122 -15.04933 -14.75297 -14.53470 -14.24194 -13.97380 -13.65897 -13.47516 -13.15250 -12.96378 -12.81050 -12.64799 -12.57073 -12.30458 -12.17345 -12.00259 -11.79763 -11.55685 -11.36646 -11.00003 -10.73475 -10.56328 -10.06245 -9.37547 -8.15531 -6.25677 1.37568 1.38651 1.53396 2.12073 2.26622 2.47869 3.13186 3.31997 3.63824 3.75873 3.99473 4.24549 4.34549 4.36284 4.43007 4.49178 4.60543 4.70040 4.76417 4.82694 4.90159 4.97837 5.00073 5.02393 5.14382 5.19038 5.32048 5.45658 5.48431 5.68657 5.73328 5.97989 6.23842 6.76232 6.90336 7.02115 7.41269 7.72153 8.90811 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036753 B = 0.007095 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.665623 B = 3945.423046 C = 4514.519204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.033 3.967 3 H 0.030 0.970 4 C -0.526 4.526 5 H 0.045 0.955 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.957 3.043 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.272 1.272 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.626 5.626 15 C 0.091 3.909 16 C -0.116 4.116 17 C -0.085 4.085 18 H 0.101 0.899 19 C -0.141 4.141 20 C 0.127 3.873 21 H 0.047 0.953 22 C 0.064 3.936 23 O -0.569 6.569 24 H 0.069 0.931 25 H 0.015 0.985 26 H 0.056 0.944 27 H 0.265 0.735 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 3.617 17.992 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 H 0.047 0.953 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.783 3.217 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.421 6.421 14 N -0.363 5.363 15 C -0.032 4.032 16 C -0.154 4.154 17 C -0.104 4.104 18 H 0.119 0.881 19 C -0.198 4.198 20 C 0.023 3.977 21 H 0.065 0.935 22 C -0.014 4.014 23 O -0.374 6.374 24 H 0.088 0.912 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.061 3.079 17.566 17.834 hybrid contribution 0.913 -0.478 -1.170 1.559 sum 0.974 2.601 16.397 16.630 Atomic orbital electron populations 1.21659 0.95455 0.98998 1.01883 1.18697 0.95108 0.95276 0.89739 0.95252 1.21330 1.31322 1.12562 0.91243 0.93679 1.25625 0.95228 0.95806 1.01439 1.69959 1.37399 1.23651 1.24208 0.85519 0.78389 0.78547 0.79267 1.20636 1.19752 1.19712 1.21284 0.79014 0.84446 0.84236 1.90585 1.37834 1.27580 1.86120 1.48747 1.52593 1.30422 1.04506 1.22584 0.94968 0.87155 0.98464 1.22918 1.03406 0.96542 0.92552 1.22210 1.00380 0.94524 0.93250 0.88082 1.21861 0.98306 1.02728 0.96939 1.21787 0.93800 0.97359 0.84710 0.93461 1.22826 0.93946 0.92463 0.92177 1.87055 1.25418 1.65341 1.59588 0.91176 0.96587 0.92495 0.92598 0.91587 0.90779 0.86616 0.90419 0.92279 0.91725 0.89843 0.94313 0.90083 0.77989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.78 71.98 0.63 -5.37 16 2 C 0.03 1.79 1.99 -12.29 -0.02 1.77 16 3 H 0.03 1.67 7.85 -2.39 -0.02 1.66 16 4 C -0.53 -32.37 8.37 25.60 0.21 -32.16 16 5 H 0.04 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.04 5.30 84.66 0.45 1.48 16 7 N -0.91 -53.17 11.32 21.45 0.24 -52.93 16 8 Si 0.96 46.78 29.54 68.60 2.03 48.80 16 9 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.52 26.48 6.96 87.66 0.61 27.09 16 13 O -0.55 -31.68 12.58 20.26 0.25 -31.43 16 14 N -0.63 -24.14 3.08 -788.08 -2.42 -26.56 16 15 C 0.09 2.64 5.14 86.85 0.45 3.09 16 16 C -0.12 -2.21 6.53 31.99 0.21 -2.00 16 17 C -0.08 -1.62 3.48 -9.60 -0.03 -1.66 16 18 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 19 C -0.14 -1.90 7.93 71.98 0.57 -1.33 16 20 C 0.13 3.95 3.26 45.34 0.15 4.10 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 C 0.06 1.89 5.36 71.98 0.39 2.28 16 23 O -0.57 -22.00 10.22 -125.69 -1.28 -23.29 16 24 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 25 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 2.29 4.99 -2.39 -0.01 2.28 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.07 2.09 7.36 -2.39 -0.02 2.08 16 29 H 0.07 2.02 7.07 -2.39 -0.02 2.00 16 30 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.46 8.02 -2.38 -0.02 1.44 16 32 H 0.06 0.84 6.72 -2.39 -0.02 0.82 16 33 H 0.06 0.83 7.56 -2.39 -0.02 0.81 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.04 1.13 7.83 -2.39 -0.02 1.11 16 36 H 0.08 1.77 6.31 -2.38 -0.02 1.75 16 37 H 0.37 10.92 9.12 -74.05 -0.68 10.25 16 Total: -1.00 -77.39 285.82 2.81 -74.57 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.39 Total: 13.53 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 3.61 Total: -2.71 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -2.18 Total: -79.49 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -1.03 Total: -54.71 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -77.39 2.81 -74.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597544267.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.193 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds