Wall clock time and date at job start Mon Mar 30 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 5 5 H 1.08000 * 119.99624 * 239.99899 * 4 2 1 6 6 C 1.37872 * 119.99634 * 59.99606 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47041 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47126 * 120.00332 * 8 6 4 11 11 H 1.48496 * 109.47151 * 240.00056 * 8 6 4 12 12 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 13 13 O 1.21283 * 119.99488 * 120.00024 * 12 2 1 14 14 N 1.34777 * 120.00290 * 300.00464 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 H 1.08997 * 109.54464 * 34.54231 * 15 14 12 17 17 C 1.53179 * 109.54184 * 274.27645 * 15 14 12 18 18 C 1.53090 * 109.16312 * 183.15430 * 17 15 14 19 19 O 1.42902 * 109.41606 * 57.61058 * 18 17 15 20 20 C 1.42912 * 114.09641 * 298.84120 * 19 18 17 21 21 C 1.53089 * 109.41169 * 61.15680 * 20 19 18 22 22 H 1.08997 * 109.52236 * 62.30058 * 21 20 19 23 23 C 1.53003 * 109.57094 * 182.45577 * 21 20 19 24 24 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 26 26 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 27 27 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 29 29 H 1.09004 * 109.52198 * 303.05734 * 17 15 14 30 30 H 1.09001 * 109.52123 * 63.24589 * 17 15 14 31 31 H 1.09000 * 109.48237 * 297.62344 * 18 17 15 32 32 H 1.08999 * 109.48403 * 177.59303 * 18 17 15 33 33 H 1.08998 * 109.47799 * 301.17818 * 20 19 18 34 34 H 1.08998 * 109.48544 * 181.14687 * 20 19 18 35 35 H 1.08997 * 109.47212 * 179.72041 * 23 21 20 36 36 H 1.09001 * 109.46754 * 299.71984 * 23 21 20 37 37 H 1.08996 * 109.47396 * 59.71878 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.2001 -0.9368 3.6508 16 1 3.1975 -1.3323 3.4589 17 6 1.2520 -2.0851 4.0099 18 6 1.7317 -2.7468 5.3044 19 8 1.7908 -1.7685 6.3444 20 6 2.6974 -0.6948 6.0847 21 6 2.2564 0.0493 4.8215 22 1 1.2691 0.4830 4.9803 23 6 3.2586 1.1614 4.5056 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5137 -0.8900 27 1 0.7089 1.1612 -3.4844 28 1 1.1493 0.5390 2.5436 29 1 0.2444 -1.6944 4.1523 30 1 1.2484 -2.8198 3.2048 31 1 2.7230 -3.1726 5.1492 32 1 1.0368 -3.5372 5.5879 33 1 3.7013 -1.0938 5.9397 34 1 2.6982 -0.0070 6.9302 35 1 2.9458 1.6868 3.6033 36 1 3.2980 1.8625 5.3392 37 1 4.2460 0.7270 4.3492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597570536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:04 Heat of formation + Delta-G solvation = -104.971739 kcal Electronic energy + Delta-G solvation = -18074.902357 eV Core-core repulsion = 15237.410521 eV Total energy + Delta-G solvation = -2837.491836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93859 -38.29923 -35.20112 -33.71965 -32.65077 -31.35948 -30.00211 -26.81649 -25.14721 -24.71143 -22.37689 -22.15819 -20.23847 -19.23268 -16.73581 -16.21332 -16.12296 -15.70697 -15.09044 -14.73807 -14.54537 -14.19452 -13.63233 -13.48506 -12.87433 -12.81634 -12.42445 -12.11577 -12.00157 -11.55099 -11.33111 -11.09163 -11.01900 -10.76146 -10.69287 -10.65590 -10.33005 -10.22553 -9.95459 -9.69882 -8.95612 -8.57732 -8.42740 -8.30529 -6.02816 -4.05756 3.32262 3.39796 3.48000 3.72911 3.76558 3.92315 4.47854 4.60481 4.77840 4.85620 5.12465 5.19032 5.30577 5.37028 5.40429 5.50487 5.61897 5.65150 5.79934 5.88884 5.99228 6.06805 6.20403 6.24986 6.43497 6.62590 6.83507 6.93603 7.11107 7.12436 7.48424 7.76356 8.00084 8.16409 8.46925 9.03827 9.26252 9.60015 11.04856 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042402 B = 0.005512 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.187162 B = 5079.031550 C = 5248.786428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.521 3.479 13 O -0.547 6.547 14 N -0.740 5.740 15 C 0.149 3.851 16 H 0.083 0.917 17 C -0.167 4.167 18 C 0.064 3.936 19 O -0.385 6.385 20 C 0.070 3.930 21 C -0.134 4.134 22 H 0.082 0.918 23 C -0.145 4.145 24 H 0.030 0.970 25 H 0.011 0.989 26 H 0.093 0.907 27 H 0.260 0.740 28 H 0.395 0.605 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 -0.075 15.424 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.393 5.393 15 C 0.044 3.956 16 H 0.101 0.899 17 C -0.206 4.206 18 C -0.013 4.013 19 O -0.304 6.304 20 C -0.008 4.008 21 C -0.153 4.153 22 H 0.100 0.900 23 C -0.202 4.202 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.229 0.771 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.934 -0.708 15.336 15.381 hybrid contribution 0.085 0.038 -1.111 1.115 sum 1.019 -0.669 14.225 14.277 Atomic orbital electron populations 1.21734 0.96577 0.99756 1.00881 1.18878 0.94118 0.96807 0.89469 0.93109 1.21189 1.30797 1.12743 0.89011 0.90771 1.24955 0.95154 0.95082 0.99126 1.69883 1.37242 1.23153 1.23392 0.86410 0.78617 0.79789 0.82519 1.19588 1.21060 1.21057 1.21969 0.78243 0.84242 0.84500 1.90521 1.38082 1.26935 1.86770 1.46326 1.55151 1.32503 1.05307 1.20819 0.98294 0.91772 0.84761 0.89894 1.22627 1.00371 0.99416 0.98161 1.22578 1.00986 0.90696 0.87059 1.87901 1.64182 1.35237 1.43083 1.22608 0.92485 0.88788 0.96870 1.22076 1.01081 0.96767 0.95416 0.89965 1.21737 0.98870 0.97695 1.01942 0.95064 0.96962 0.88888 0.93050 0.77117 0.91033 0.90089 0.93032 0.88822 0.93008 0.88754 0.91625 0.92528 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.20 8.37 -34.44 -0.29 -14.48 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 12 C 0.52 11.74 7.12 -10.98 -0.08 11.66 16 13 O -0.55 -14.14 15.12 5.55 0.08 -14.05 16 14 N -0.74 -12.68 4.37 -53.63 -0.23 -12.92 16 15 C 0.15 2.21 1.96 -67.75 -0.13 2.08 16 16 H 0.08 1.40 7.57 -51.93 -0.39 1.00 16 17 C -0.17 -2.35 5.72 -26.59 -0.15 -2.50 16 18 C 0.06 0.76 6.84 37.20 0.25 1.02 16 19 O -0.39 -4.81 10.77 -35.23 -0.38 -5.19 16 20 C 0.07 0.74 6.13 37.20 0.23 0.97 16 21 C -0.13 -1.55 2.48 -90.48 -0.22 -1.77 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 23 C -0.15 -1.57 9.08 37.16 0.34 -1.23 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.39 5.97 7.99 -40.82 -0.33 5.65 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -31.00 298.44 -6.46 -37.46 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.97 Total: 2.95 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.07 Total: -4.99 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.39 Total: -37.53 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.30 Total: -19.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.00 -6.46 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597570536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.511 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds