Wall clock time and date at job start Mon Mar 30 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 5 5 H 1.08000 * 119.99624 * 239.99899 * 4 2 1 6 6 C 1.37872 * 119.99634 * 59.99606 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47041 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47126 * 120.00332 * 8 6 4 11 11 H 1.48496 * 109.47151 * 240.00056 * 8 6 4 12 12 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 13 13 O 1.21283 * 119.99488 * 120.00024 * 12 2 1 14 14 N 1.34777 * 120.00290 * 300.00464 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 H 1.08997 * 109.54464 * 34.54231 * 15 14 12 17 17 C 1.53179 * 109.54184 * 274.27645 * 15 14 12 18 18 C 1.53090 * 109.16312 * 183.15430 * 17 15 14 19 19 O 1.42902 * 109.41606 * 57.61058 * 18 17 15 20 20 C 1.42912 * 114.09641 * 298.84120 * 19 18 17 21 21 C 1.53089 * 109.41169 * 61.15680 * 20 19 18 22 22 H 1.08997 * 109.52236 * 62.30058 * 21 20 19 23 23 C 1.53003 * 109.57094 * 182.45577 * 21 20 19 24 24 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 26 26 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 27 27 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 29 29 H 1.09004 * 109.52198 * 303.05734 * 17 15 14 30 30 H 1.09001 * 109.52123 * 63.24589 * 17 15 14 31 31 H 1.09000 * 109.48237 * 297.62344 * 18 17 15 32 32 H 1.08999 * 109.48403 * 177.59303 * 18 17 15 33 33 H 1.08998 * 109.47799 * 301.17818 * 20 19 18 34 34 H 1.08998 * 109.48544 * 181.14687 * 20 19 18 35 35 H 1.08997 * 109.47212 * 179.72041 * 23 21 20 36 36 H 1.09001 * 109.46754 * 299.71984 * 23 21 20 37 37 H 1.08996 * 109.47396 * 59.71878 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.2001 -0.9368 3.6508 16 1 3.1975 -1.3323 3.4589 17 6 1.2520 -2.0851 4.0099 18 6 1.7317 -2.7468 5.3044 19 8 1.7908 -1.7685 6.3444 20 6 2.6974 -0.6948 6.0847 21 6 2.2564 0.0493 4.8215 22 1 1.2691 0.4830 4.9803 23 6 3.2586 1.1614 4.5056 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5137 -0.8900 27 1 0.7089 1.1612 -3.4844 28 1 1.1493 0.5390 2.5436 29 1 0.2444 -1.6944 4.1523 30 1 1.2484 -2.8198 3.2048 31 1 2.7230 -3.1726 5.1492 32 1 1.0368 -3.5372 5.5879 33 1 3.7013 -1.0938 5.9397 34 1 2.6982 -0.0070 6.9302 35 1 2.9458 1.6868 3.6033 36 1 3.2980 1.8625 5.3392 37 1 4.2460 0.7270 4.3492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597570536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:04 Heat of formation + Delta-G solvation = -126.008032 kcal Electronic energy + Delta-G solvation = -18075.814560 eV Core-core repulsion = 15237.410521 eV Total energy + Delta-G solvation = -2838.404039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21831 -39.77816 -36.48054 -35.76099 -33.85242 -32.89408 -31.70086 -27.74299 -27.22220 -25.98554 -23.95207 -23.32489 -21.43001 -20.86506 -18.43768 -17.90124 -17.34974 -17.08497 -16.61418 -16.09982 -15.94874 -15.55715 -15.05731 -14.84837 -14.47175 -14.34992 -13.82727 -13.45008 -13.01430 -12.99339 -12.96239 -12.71325 -12.60451 -12.38287 -12.21979 -12.05492 -12.03369 -11.76569 -11.34356 -11.03774 -10.77919 -10.55498 -10.21242 -9.92795 -8.16239 -6.26524 1.38277 1.40327 1.53701 1.93437 2.32703 2.50746 2.93301 3.13295 3.57258 3.78425 3.86881 4.06692 4.22218 4.25605 4.45391 4.49195 4.62250 4.66709 4.73375 4.76740 4.85535 4.92570 4.93749 4.99490 5.06095 5.08853 5.21863 5.35010 5.48840 5.63728 5.74661 5.93520 6.19672 6.21024 6.74082 6.86364 7.39446 7.55610 8.89750 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042402 B = 0.005512 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.187162 B = 5079.031550 C = 5248.786428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.588 6.588 14 N -0.718 5.718 15 C 0.144 3.856 16 H 0.060 0.940 17 C -0.163 4.163 18 C 0.069 3.931 19 O -0.392 6.392 20 C 0.068 3.932 21 C -0.124 4.124 22 H 0.093 0.907 23 C -0.144 4.144 24 H 0.021 0.979 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.408 0.592 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 0.556 16.916 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.313 3.687 13 O -0.467 6.467 14 N -0.370 5.370 15 C 0.039 3.961 16 H 0.078 0.922 17 C -0.202 4.202 18 C -0.008 4.008 19 O -0.311 6.311 20 C -0.009 4.009 21 C -0.143 4.143 22 H 0.111 0.889 23 C -0.201 4.201 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.490 -0.038 16.868 16.875 hybrid contribution 0.221 -0.121 -1.531 1.552 sum 0.711 -0.159 15.336 15.353 Atomic orbital electron populations 1.21544 0.95106 0.99318 1.01663 1.18813 0.95289 0.95905 0.89775 0.94188 1.21313 1.31470 1.12648 0.91177 0.93463 1.25598 0.95214 0.95758 1.01433 1.69955 1.37277 1.23592 1.24237 0.85547 0.78355 0.78575 0.79428 1.20533 1.19906 1.19912 1.21502 0.78004 0.83632 0.85587 1.90499 1.40041 1.28672 1.87509 1.46046 1.54036 1.32377 1.04565 1.21037 0.97208 0.93030 0.84780 0.92179 1.22568 1.00543 0.98515 0.98572 1.22571 1.01512 0.90887 0.85863 1.87903 1.64644 1.35612 1.42934 1.22786 0.92272 0.88731 0.97140 1.22037 1.02018 0.96089 0.94142 0.88875 1.21733 0.98114 0.97782 1.02471 0.95970 0.93036 0.91124 0.92607 0.75594 0.90385 0.92779 0.92906 0.87011 0.92678 0.85983 0.92982 0.89738 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.87 71.98 0.64 -4.77 16 2 C 0.02 1.18 2.64 -12.28 -0.03 1.15 16 3 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.53 -30.83 8.37 25.60 0.21 -30.62 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -51.33 11.32 21.45 0.24 -51.08 16 8 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 9 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.52 24.02 7.12 87.66 0.62 24.64 16 13 O -0.59 -31.45 15.12 -3.04 -0.05 -31.50 16 14 N -0.72 -24.23 4.37 -441.97 -1.93 -26.16 16 15 C 0.14 4.17 1.96 45.11 0.09 4.25 16 16 H 0.06 2.05 7.57 -2.39 -0.02 2.03 16 17 C -0.16 -4.45 5.72 30.68 0.18 -4.27 16 18 C 0.07 1.53 6.84 72.01 0.49 2.02 16 19 O -0.39 -8.69 10.77 -148.98 -1.60 -10.29 16 20 C 0.07 1.23 6.13 72.01 0.44 1.67 16 21 C -0.12 -2.55 2.48 -10.70 -0.03 -2.58 16 22 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 23 C -0.14 -2.78 9.08 71.98 0.65 -2.13 16 24 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 26 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 27 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.41 11.67 7.99 -92.71 -0.74 10.93 16 29 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.15 7.68 -2.39 -0.02 1.13 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -67.66 298.44 2.72 -64.94 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.31 Total: 15.97 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 3.72 Total: -9.11 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -1.69 Total: -77.24 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.65 Total: -41.79 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.66 2.72 -64.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597570536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.066 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds