Wall clock time and date at job start Mon Mar 30 2020 04:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46949 * 60.00026 * 8 6 4 10 10 H 1.48499 * 109.47367 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47219 * 300.00259 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.27443 * 307.09740 * 16 15 14 18 18 C 1.54950 * 110.31223 * 184.99971 * 16 15 14 19 19 C 1.55302 * 100.93946 * 204.64027 * 18 16 15 20 20 C 1.54382 * 102.25563 * 34.13834 * 19 18 16 21 21 H 1.08996 * 109.83079 * 98.15302 * 20 19 18 22 22 C 1.53004 * 109.82761 * 219.03673 * 20 19 18 23 23 O 1.43233 * 107.58764 * 338.63814 * 20 19 18 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 26 26 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 27 27 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 29 29 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 30 30 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 31 31 H 1.08992 * 111.12522 * 322.56152 * 18 16 15 32 32 H 1.08999 * 111.11869 * 86.68397 * 18 16 15 33 33 H 1.09008 * 110.84254 * 152.32755 * 19 18 16 34 34 H 1.08996 * 110.85375 * 275.94350 * 19 18 16 35 35 H 1.08999 * 109.47096 * 59.99912 * 22 20 19 36 36 H 1.09004 * 109.46600 * 180.02562 * 22 20 19 37 37 H 1.09001 * 109.46682 * 299.99190 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0080 10 1 1.8260 -0.4207 5.2204 11 1 1.8259 -2.5202 4.0076 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 1 0.5893 -0.1096 -4.8487 18 6 2.0659 -1.0172 -6.1743 19 6 2.0572 0.1159 -7.2363 20 6 2.5476 1.3322 -6.4218 21 1 3.6136 1.4847 -6.5906 22 6 1.7720 2.5833 -6.8394 23 8 2.3101 1.0505 -5.0377 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7087 1.1612 3.4844 28 1 1.1446 0.5355 -2.5436 29 1 3.2755 -0.9477 -3.6550 30 1 1.8218 -1.9748 -3.6465 31 1 3.0594 -1.4541 -6.0742 32 1 1.3250 -1.7816 -6.4084 33 1 2.7467 -0.1097 -8.0499 34 1 1.0494 0.2841 -7.6159 35 1 0.7089 2.4305 -6.6536 36 1 2.1231 3.4381 -6.2613 37 1 1.9320 2.7725 -7.9008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597758712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:44 Heat of formation + Delta-G solvation = -102.145385 kcal Electronic energy + Delta-G solvation = -17513.358893 eV Core-core repulsion = 14675.989617 eV Total energy + Delta-G solvation = -2837.369276 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86929 -38.48813 -34.33985 -33.63721 -32.42656 -31.67760 -30.30747 -27.62584 -25.06241 -24.09652 -22.10177 -21.74538 -20.71812 -19.17099 -17.16933 -16.40423 -16.15627 -15.55602 -15.03610 -14.54323 -14.33231 -14.19348 -13.65770 -13.28111 -12.96030 -12.65660 -12.47943 -12.13900 -11.95790 -11.88937 -11.38459 -11.27011 -11.03179 -10.97113 -10.93370 -10.66175 -10.62245 -10.17253 -9.89441 -9.60026 -8.90734 -8.52943 -8.32637 -8.24298 -5.96153 -3.98986 3.40980 3.42883 3.48522 3.56407 3.85045 4.02651 4.28003 4.52752 4.55258 4.68128 4.97222 5.03173 5.15169 5.27005 5.36686 5.38464 5.42178 5.49083 5.60934 5.73646 5.84413 5.93076 6.03075 6.11158 6.39464 6.70009 6.91172 6.97717 7.01459 7.20131 7.56646 7.83342 8.06890 8.24237 8.55666 9.09665 9.34887 9.66162 11.11493 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048259 B = 0.004595 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.066433 B = 6092.116996 C = 6374.161284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.551 6.551 14 N -0.742 5.742 15 C 0.123 3.877 16 C 0.070 3.930 17 H 0.076 0.924 18 C -0.149 4.149 19 C -0.151 4.151 20 C 0.074 3.926 21 H 0.078 0.922 22 C -0.162 4.162 23 O -0.368 6.368 24 H 0.092 0.908 25 H 0.012 0.988 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.398 0.602 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 1.415 -19.706 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.427 6.427 14 N -0.397 5.397 15 C -0.001 4.001 16 C 0.012 3.988 17 H 0.094 0.906 18 C -0.187 4.187 19 C -0.188 4.188 20 C 0.016 3.984 21 H 0.096 0.904 22 C -0.220 4.220 23 O -0.288 6.288 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.232 0.768 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.497 0.935 -19.299 19.328 hybrid contribution -0.044 -0.122 0.494 0.511 sum -0.541 0.813 -18.805 18.830 Atomic orbital electron populations 1.21730 0.96604 0.99698 1.00889 1.18863 0.94111 0.96891 0.89383 0.92988 1.21118 1.30869 1.12745 0.89059 0.90880 1.24952 0.95180 0.95098 0.99071 1.69872 1.37178 1.23145 1.23524 0.86508 0.79270 0.79683 0.81667 1.20220 1.21419 1.20248 1.21957 0.78408 0.84229 0.84522 1.90517 1.38212 1.27104 1.86871 1.46202 1.55478 1.32624 1.05350 1.21325 0.99822 0.95526 0.83444 1.23248 0.97136 0.83574 0.94803 0.90633 1.23240 1.03339 0.98196 0.93931 1.23187 1.02490 0.94598 0.98557 1.22710 0.99374 0.94572 0.81743 0.90432 1.22143 1.00811 0.97995 1.01010 1.88537 1.80277 1.35976 1.23964 0.88895 0.96932 0.95082 0.92985 0.76779 0.91563 0.91022 0.89898 0.89653 0.90094 0.90409 0.92183 0.91805 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.86 37.16 0.33 -2.78 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -14.62 8.37 -34.44 -0.29 -14.91 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.52 12.45 7.15 -10.98 -0.08 12.38 16 13 O -0.55 -14.97 15.46 5.55 0.09 -14.88 16 14 N -0.74 -13.90 5.44 -60.29 -0.33 -14.23 16 15 C 0.12 1.93 5.38 -4.04 -0.02 1.90 16 16 C 0.07 0.85 3.47 -25.70 -0.09 0.76 16 17 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.15 -1.35 6.57 -24.48 -0.16 -1.51 16 19 C -0.15 -1.18 6.54 -24.79 -0.16 -1.34 16 20 C 0.07 0.73 4.15 -26.00 -0.11 0.62 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.16 -1.39 9.44 37.16 0.35 -1.04 16 23 O -0.37 -4.95 10.70 -35.23 -0.38 -5.33 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.01 0.24 7.55 -51.93 -0.39 -0.15 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.40 6.76 7.88 -40.82 -0.32 6.44 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.75 8.06 -51.93 -0.42 0.34 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.08 0.54 7.85 -51.93 -0.41 0.14 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -32.50 303.71 -7.00 -39.50 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.99 Total: 2.14 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.57 Total: -3.89 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.30 Total: -39.40 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.29 Total: -20.21 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.50 -7.00 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.648 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds