Wall clock time and date at job start Mon Mar 30 2020 04:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46949 * 60.00026 * 8 6 4 10 10 H 1.48499 * 109.47367 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47219 * 300.00259 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.27443 * 307.09740 * 16 15 14 18 18 C 1.54950 * 110.31223 * 184.99971 * 16 15 14 19 19 C 1.55302 * 100.93946 * 204.64027 * 18 16 15 20 20 C 1.54382 * 102.25563 * 34.13834 * 19 18 16 21 21 H 1.08996 * 109.83079 * 98.15302 * 20 19 18 22 22 C 1.53004 * 109.82761 * 219.03673 * 20 19 18 23 23 O 1.43233 * 107.58764 * 338.63814 * 20 19 18 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 26 26 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 27 27 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 29 29 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 30 30 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 31 31 H 1.08992 * 111.12522 * 322.56152 * 18 16 15 32 32 H 1.08999 * 111.11869 * 86.68397 * 18 16 15 33 33 H 1.09008 * 110.84254 * 152.32755 * 19 18 16 34 34 H 1.08996 * 110.85375 * 275.94350 * 19 18 16 35 35 H 1.08999 * 109.47096 * 59.99912 * 22 20 19 36 36 H 1.09004 * 109.46600 * 180.02562 * 22 20 19 37 37 H 1.09001 * 109.46682 * 299.99190 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0080 10 1 1.8260 -0.4207 5.2204 11 1 1.8259 -2.5202 4.0076 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 1 0.5893 -0.1096 -4.8487 18 6 2.0659 -1.0172 -6.1743 19 6 2.0572 0.1159 -7.2363 20 6 2.5476 1.3322 -6.4218 21 1 3.6136 1.4847 -6.5906 22 6 1.7720 2.5833 -6.8394 23 8 2.3101 1.0505 -5.0377 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7087 1.1612 3.4844 28 1 1.1446 0.5355 -2.5436 29 1 3.2755 -0.9477 -3.6550 30 1 1.8218 -1.9748 -3.6465 31 1 3.0594 -1.4541 -6.0742 32 1 1.3250 -1.7816 -6.4084 33 1 2.7467 -0.1097 -8.0499 34 1 1.0494 0.2841 -7.6159 35 1 0.7089 2.4305 -6.6536 36 1 2.1231 3.4381 -6.2613 37 1 1.9320 2.7725 -7.9008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597758712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:44 Heat of formation + Delta-G solvation = -124.710091 kcal Electronic energy + Delta-G solvation = -17514.337373 eV Core-core repulsion = 14675.989617 eV Total energy + Delta-G solvation = -2838.347756 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93041 -40.15485 -35.90476 -35.69460 -33.22645 -33.00335 -32.04616 -28.74318 -27.18909 -25.26923 -23.80240 -22.58524 -21.61228 -20.95774 -18.42561 -18.02670 -17.83871 -16.86349 -16.66553 -16.23353 -15.93082 -15.27908 -14.78904 -14.60094 -14.33697 -14.03495 -13.90130 -13.42407 -13.09581 -12.96213 -12.83468 -12.71666 -12.62164 -12.58903 -12.21177 -12.13893 -11.97538 -11.71425 -11.67494 -11.04638 -10.60239 -10.49320 -10.30272 -9.97084 -8.14156 -6.25085 1.41413 1.43539 1.52065 1.92963 2.34327 2.51760 2.81511 3.15012 3.53385 3.77935 3.89801 4.12255 4.19069 4.32301 4.43342 4.47227 4.53490 4.68771 4.75562 4.78819 4.91061 4.91707 4.95989 5.02383 5.06199 5.11678 5.26724 5.37640 5.49780 5.58512 5.75114 5.94564 6.15558 6.21708 6.73434 6.86321 7.40022 7.54056 8.91652 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048259 B = 0.004595 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.066433 B = 6092.116996 C = 6374.161284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.037 0.963 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.723 5.723 15 C 0.121 3.879 16 C 0.074 3.926 17 H 0.088 0.912 18 C -0.145 4.145 19 C -0.140 4.140 20 C 0.062 3.938 21 H 0.077 0.923 22 C -0.159 4.159 23 O -0.399 6.399 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 1.435 -21.299 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.055 0.945 4 C -0.569 4.569 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.309 3.691 13 O -0.470 6.470 14 N -0.376 5.376 15 C -0.003 4.003 16 C 0.016 3.984 17 H 0.105 0.895 18 C -0.183 4.183 19 C -0.178 4.178 20 C 0.005 3.995 21 H 0.095 0.905 22 C -0.216 4.216 23 O -0.319 6.319 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.233 0.992 -20.937 20.997 hybrid contribution 0.198 -0.069 0.934 0.957 sum -1.035 0.923 -20.003 20.051 Atomic orbital electron populations 1.21538 0.94878 0.99483 1.01659 1.18814 0.95523 0.95771 0.89750 0.94517 1.21262 1.31719 1.12786 0.91142 0.93324 1.25630 0.95169 0.95767 1.01494 1.69954 1.37158 1.23602 1.24381 0.85615 0.78617 0.78749 0.78671 1.20235 1.19818 1.20022 1.21560 0.78215 0.83702 0.85663 1.90490 1.40099 1.28808 1.87611 1.45975 1.54253 1.32456 1.04878 1.21539 0.98984 0.96176 0.83596 1.23233 0.97379 0.83629 0.94149 0.89466 1.23256 1.03764 0.98749 0.92533 1.23176 1.03739 0.92592 0.98249 1.22962 0.99809 0.96169 0.80601 0.90507 1.22123 1.00422 0.96849 1.02196 1.88504 1.80554 1.36445 1.26424 0.91056 0.93117 0.95640 0.92572 0.75544 0.93146 0.90529 0.90196 0.87647 0.88150 0.89030 0.92249 0.93095 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.86 71.98 0.64 -4.91 16 2 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16 3 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 4 C -0.53 -31.81 8.37 25.60 0.21 -31.60 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 12 C 0.52 25.27 7.15 87.66 0.63 25.90 16 13 O -0.59 -32.91 15.46 -3.04 -0.05 -32.95 16 14 N -0.72 -26.76 5.44 -463.06 -2.52 -29.28 16 15 C 0.12 3.69 5.38 86.38 0.46 4.15 16 16 C 0.07 1.64 3.47 31.26 0.11 1.75 16 17 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.15 -2.24 6.57 32.05 0.21 -2.03 16 19 C -0.14 -1.73 6.54 31.85 0.21 -1.53 16 20 C 0.06 1.10 4.15 31.06 0.13 1.23 16 21 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 22 C -0.16 -2.40 9.44 71.98 0.68 -1.72 16 23 O -0.40 -10.24 10.70 -148.98 -1.59 -11.84 16 24 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 25 H 0.05 1.94 7.55 -2.39 -0.02 1.92 16 26 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 28 H 0.41 13.40 7.88 -92.71 -0.73 12.67 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 0.92 7.85 -2.39 -0.02 0.90 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -70.89 303.71 2.12 -68.77 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.32 Total: 15.67 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 3.70 Total: -6.07 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.28 Total: -81.51 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.64 Total: -44.79 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.89 2.12 -68.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.941 kcal (2) G-P(sol) polarization free energy of solvation -70.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds