Wall clock time and date at job start Mon Mar 30 2020 04:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.21280 * 119.99781 * 240.00479 * 12 2 1 14 14 N 1.34780 * 119.99795 * 59.99803 * 12 2 1 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.46983 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.33378 * 60.79684 * 16 15 14 18 18 C 1.54483 * 110.37687 * 183.16797 * 16 15 14 19 19 C 1.54503 * 104.06651 * 142.80918 * 18 16 15 20 20 C 1.54482 * 104.06234 * 0.02562 * 19 18 16 21 21 H 1.08997 * 110.37005 * 94.85278 * 20 19 18 22 22 C 1.52998 * 110.37180 * 217.19066 * 20 19 18 23 23 O 1.44426 * 104.80208 * 336.02032 * 20 19 18 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00011 * 0.02562 * 14 12 2 29 29 H 1.09001 * 109.47487 * 300.00114 * 15 14 12 30 30 H 1.09002 * 109.47182 * 60.00342 * 15 14 12 31 31 H 1.09001 * 110.50757 * 261.45531 * 18 16 15 32 32 H 1.09002 * 110.50767 * 24.15880 * 18 16 15 33 33 H 1.09004 * 110.51359 * 241.35721 * 19 18 16 34 34 H 1.09002 * 110.51349 * 118.64610 * 19 18 16 35 35 H 1.09004 * 109.47283 * 176.83320 * 22 20 19 36 36 H 1.08996 * 109.47235 * 296.83669 * 22 20 19 37 37 H 1.09003 * 109.47129 * 56.83594 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 6 1.6854 -0.2193 -4.8999 17 1 2.0533 0.8065 -4.9212 18 6 2.1220 -0.9762 -6.1739 19 6 0.9163 -0.8305 -7.1290 20 6 -0.1060 -0.0023 -6.3194 21 1 -0.0125 1.0565 -6.5606 22 6 -1.5286 -0.4902 -6.6001 23 8 0.2420 -0.2357 -4.9372 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7086 1.1614 3.4844 28 1 1.1494 0.5388 -2.5436 29 1 3.2848 -0.9414 -3.6508 30 1 1.8310 -1.9685 -3.6505 31 1 3.0099 -0.5152 -6.6066 32 1 2.3068 -2.0268 -5.9495 33 1 0.5049 -1.8091 -7.3768 34 1 1.2080 -0.2975 -8.0339 35 1 -2.2323 0.0654 -5.9803 36 1 -1.7664 -0.3310 -7.6518 37 1 -1.6007 -1.5529 -6.3682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597758716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:49 Heat of formation + Delta-G solvation = -101.716712 kcal Electronic energy + Delta-G solvation = -17554.005025 eV Core-core repulsion = 14716.654337 eV Total energy + Delta-G solvation = -2837.350688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.82160 -38.47437 -34.32991 -33.63160 -32.37738 -31.70343 -30.30921 -27.64170 -25.04866 -24.00116 -22.17093 -21.43864 -21.04825 -19.13098 -16.77533 -16.37169 -16.03251 -16.00138 -15.07535 -14.71525 -14.23236 -13.99897 -13.93810 -13.23178 -12.78283 -12.70958 -12.42885 -12.07110 -12.02819 -11.74578 -11.37653 -11.27603 -11.01266 -10.93792 -10.81709 -10.63569 -10.61173 -10.15084 -9.89381 -9.82359 -8.89089 -8.53061 -8.32817 -8.24427 -5.96164 -3.98924 3.38305 3.43540 3.50935 3.60678 3.85225 4.03716 4.40617 4.50751 4.56022 4.72563 4.89897 5.05312 5.17089 5.27570 5.32120 5.36890 5.43937 5.57509 5.64655 5.79075 5.86957 5.92992 5.96411 6.06424 6.39868 6.73951 6.79989 6.95013 7.03451 7.19627 7.57377 7.84732 8.07283 8.24843 8.55861 9.10105 9.34789 9.66278 11.11508 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047695 B = 0.004716 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.928419 B = 5935.401128 C = 6310.714998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.551 6.551 14 N -0.742 5.742 15 C 0.128 3.872 16 C 0.064 3.936 17 H 0.074 0.926 18 C -0.148 4.148 19 C -0.150 4.150 20 C 0.068 3.932 21 H 0.067 0.933 22 C -0.146 4.146 23 O -0.360 6.360 24 H 0.092 0.908 25 H 0.013 0.987 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.399 0.601 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 0.785 -19.560 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.427 6.427 14 N -0.396 5.396 15 C 0.004 3.996 16 C 0.006 3.994 17 H 0.092 0.908 18 C -0.186 4.186 19 C -0.188 4.188 20 C 0.010 3.990 21 H 0.085 0.915 22 C -0.204 4.204 23 O -0.280 6.280 24 H 0.110 0.890 25 H 0.032 0.968 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.233 0.767 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.851 0.123 -19.144 19.233 hybrid contribution 0.168 0.042 0.506 0.535 sum -1.683 0.165 -18.638 18.714 Atomic orbital electron populations 1.21722 0.96481 0.99800 1.00904 1.18867 0.94211 0.96773 0.89374 0.93088 1.21162 1.30766 1.12737 0.89050 0.90828 1.24955 0.95175 0.95113 0.99078 1.69881 1.37231 1.23185 1.23416 0.86456 0.78394 0.80267 0.82117 1.20718 1.21337 1.19774 1.21967 0.78389 0.84256 0.84519 1.90517 1.38315 1.27009 1.86860 1.46179 1.55393 1.32758 1.05289 1.21256 0.98592 0.96623 0.83146 1.23255 0.81952 0.99101 0.95072 0.90818 1.22921 0.98541 1.02164 0.95004 1.23003 0.95739 1.01352 0.98699 1.22972 0.95381 0.98406 0.82247 0.91493 1.21794 0.94781 1.02334 1.01456 1.89239 1.20066 1.93245 1.25407 0.88962 0.96772 0.95076 0.93047 0.76701 0.90953 0.91565 0.90322 0.90152 0.90532 0.90696 0.91694 0.91397 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.61 8.37 -34.44 -0.29 -14.90 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.81 11.32 55.43 0.63 -25.19 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 12 C 0.52 12.46 7.15 -10.98 -0.08 12.39 16 13 O -0.55 -14.98 15.46 5.56 0.09 -14.89 16 14 N -0.74 -13.94 5.37 -60.30 -0.32 -14.26 16 15 C 0.13 2.01 5.31 -4.04 -0.02 1.99 16 16 C 0.06 0.78 3.36 -25.95 -0.09 0.69 16 17 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.15 -1.39 6.63 -25.16 -0.17 -1.55 16 19 C -0.15 -1.25 6.63 -25.16 -0.17 -1.41 16 20 C 0.07 0.67 3.92 -25.95 -0.10 0.57 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.15 -1.28 9.52 37.16 0.35 -0.93 16 23 O -0.36 -4.88 10.89 -35.23 -0.38 -5.27 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 25 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.40 6.83 7.83 -40.82 -0.32 6.51 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.77 7.86 -51.93 -0.41 0.36 16 33 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -32.56 303.38 -6.99 -39.55 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.98 Total: 2.18 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.57 Total: -3.97 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.30 Total: -39.45 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.30 Total: -20.16 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.56 -6.99 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.169 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds