Wall clock time and date at job start Mon Mar 30 2020 04:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.21280 * 119.99781 * 240.00479 * 12 2 1 14 14 N 1.34780 * 119.99795 * 59.99803 * 12 2 1 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.46983 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.33378 * 60.79684 * 16 15 14 18 18 C 1.54483 * 110.37687 * 183.16797 * 16 15 14 19 19 C 1.54503 * 104.06651 * 142.80918 * 18 16 15 20 20 C 1.54482 * 104.06234 * 0.02562 * 19 18 16 21 21 H 1.08997 * 110.37005 * 94.85278 * 20 19 18 22 22 C 1.52998 * 110.37180 * 217.19066 * 20 19 18 23 23 O 1.44426 * 104.80208 * 336.02032 * 20 19 18 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00011 * 0.02562 * 14 12 2 29 29 H 1.09001 * 109.47487 * 300.00114 * 15 14 12 30 30 H 1.09002 * 109.47182 * 60.00342 * 15 14 12 31 31 H 1.09001 * 110.50757 * 261.45531 * 18 16 15 32 32 H 1.09002 * 110.50767 * 24.15880 * 18 16 15 33 33 H 1.09004 * 110.51359 * 241.35721 * 19 18 16 34 34 H 1.09002 * 110.51349 * 118.64610 * 19 18 16 35 35 H 1.09004 * 109.47283 * 176.83320 * 22 20 19 36 36 H 1.08996 * 109.47235 * 296.83669 * 22 20 19 37 37 H 1.09003 * 109.47129 * 56.83594 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 6 1.6854 -0.2193 -4.8999 17 1 2.0533 0.8065 -4.9212 18 6 2.1220 -0.9762 -6.1739 19 6 0.9163 -0.8305 -7.1290 20 6 -0.1060 -0.0023 -6.3194 21 1 -0.0125 1.0565 -6.5606 22 6 -1.5286 -0.4902 -6.6001 23 8 0.2420 -0.2357 -4.9372 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7086 1.1614 3.4844 28 1 1.1494 0.5388 -2.5436 29 1 3.2848 -0.9414 -3.6508 30 1 1.8310 -1.9685 -3.6505 31 1 3.0099 -0.5152 -6.6066 32 1 2.3068 -2.0268 -5.9495 33 1 0.5049 -1.8091 -7.3768 34 1 1.2080 -0.2975 -8.0339 35 1 -2.2323 0.0654 -5.9803 36 1 -1.7664 -0.3310 -7.6518 37 1 -1.6007 -1.5529 -6.3682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597758716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:48 Heat of formation + Delta-G solvation = -124.281028 kcal Electronic energy + Delta-G solvation = -17554.983487 eV Core-core repulsion = 14716.654337 eV Total energy + Delta-G solvation = -2838.329150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91172 -40.12239 -35.89997 -35.69185 -33.19060 -33.01686 -32.07103 -28.77976 -27.19499 -25.20209 -23.76726 -22.46075 -21.91994 -20.88260 -18.40518 -17.88342 -17.59394 -16.97448 -16.72475 -16.40916 -15.85471 -15.44199 -14.69076 -14.67783 -14.55672 -13.94142 -13.75570 -13.36521 -13.10847 -12.96717 -12.85995 -12.70362 -12.59751 -12.55455 -12.21308 -12.15299 -11.98898 -11.72749 -11.51330 -11.04264 -10.70323 -10.60555 -10.30789 -9.97537 -8.14463 -6.25231 1.41278 1.41693 1.54169 1.92293 2.33927 2.51273 2.87553 3.14778 3.59900 3.73371 3.99074 4.07138 4.18096 4.31194 4.39341 4.50337 4.57931 4.60561 4.73685 4.79742 4.90480 4.95909 4.96797 5.01966 5.07216 5.14169 5.22087 5.30159 5.49022 5.57509 5.74550 5.92963 5.99313 6.20902 6.73474 6.86271 7.39915 7.53719 8.91624 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047695 B = 0.004716 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.928419 B = 5935.401128 C = 6310.714998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.722 5.722 15 C 0.125 3.875 16 C 0.069 3.931 17 H 0.089 0.911 18 C -0.145 4.145 19 C -0.144 4.144 20 C 0.058 3.942 21 H 0.080 0.920 22 C -0.146 4.146 23 O -0.392 6.392 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.020 0.980 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 1.371 -21.094 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.308 3.692 13 O -0.470 6.470 14 N -0.375 5.375 15 C 0.002 3.998 16 C 0.011 3.989 17 H 0.107 0.893 18 C -0.183 4.183 19 C -0.181 4.181 20 C 0.001 3.999 21 H 0.098 0.902 22 C -0.203 4.203 23 O -0.313 6.313 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.998 0.746 -20.722 20.832 hybrid contribution 0.172 -0.105 0.926 0.947 sum -1.826 0.640 -19.797 19.891 Atomic orbital electron populations 1.21532 0.95224 0.99218 1.01533 1.18813 0.95206 0.96007 0.89744 0.94021 1.21288 1.31637 1.12755 0.91124 0.93337 1.25631 0.95156 0.95776 1.01496 1.69956 1.37189 1.23635 1.24334 0.85555 0.78425 0.78719 0.78943 1.19839 1.19866 1.20403 1.21567 0.78212 0.83714 0.85657 1.90491 1.40239 1.28668 1.87596 1.45942 1.54186 1.32553 1.04829 1.21465 0.98973 0.96099 0.83296 1.23242 0.81775 0.99717 0.94177 0.89348 1.22938 0.99937 1.01619 0.93842 1.23000 0.94554 1.01555 0.99013 1.23244 0.96268 0.99553 0.80803 0.90242 1.21821 0.94125 1.01432 1.02890 1.89205 1.20611 1.93556 1.27908 0.90945 0.93394 0.96117 0.92569 0.75499 0.90486 0.93091 0.88074 0.90756 0.90371 0.88202 0.92630 0.88864 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.87 71.98 0.64 -5.04 16 2 C 0.02 1.24 2.64 -12.28 -0.03 1.21 16 3 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.53 -31.75 8.37 25.60 0.21 -31.53 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -52.42 11.32 21.45 0.24 -52.17 16 8 Si 0.96 45.90 29.54 68.60 2.03 47.92 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 C 0.52 25.30 7.15 87.66 0.63 25.92 16 13 O -0.59 -32.94 15.46 -3.03 -0.05 -32.98 16 14 N -0.72 -26.83 5.37 -463.06 -2.49 -29.32 16 15 C 0.13 3.84 5.31 86.38 0.46 4.30 16 16 C 0.07 1.53 3.36 31.10 0.10 1.64 16 17 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.15 -2.35 6.63 31.61 0.21 -2.14 16 19 C -0.14 -1.94 6.63 31.61 0.21 -1.73 16 20 C 0.06 1.02 3.92 31.10 0.12 1.14 16 21 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 22 C -0.15 -2.28 9.52 71.98 0.69 -1.60 16 23 O -0.39 -10.04 10.89 -148.98 -1.62 -11.66 16 24 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 25 H 0.05 1.94 7.56 -2.39 -0.02 1.92 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.41 13.53 7.83 -92.71 -0.73 12.81 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.30 7.86 -2.39 -0.02 1.28 16 33 H 0.08 1.04 7.86 -2.39 -0.02 1.03 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 Total: -1.00 -70.71 303.38 2.12 -68.59 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.32 Total: 15.94 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.69 Total: -6.32 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -2.25 Total: -81.49 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.67 Total: -44.64 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -70.71 2.12 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.691 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds