Wall clock time and date at job start Mon Mar 30 2020 04:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00151 * 2 1 4 4 O 1.20831 * 119.99995 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00478 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.45781 * 299.97355 * 5 3 2 7 7 C 1.53039 * 109.46412 * 179.97438 * 5 3 2 8 8 C 1.53185 * 109.31574 * 178.61408 * 7 5 3 9 9 H 1.08998 * 109.59134 * 174.42683 * 8 7 5 10 10 C 1.53005 * 109.70551 * 294.78388 * 8 7 5 11 11 N 1.46928 * 108.77415 * 54.63575 * 8 7 5 12 12 C 1.36941 * 120.62989 * 126.36762 * 11 8 7 13 13 H 1.08003 * 119.99816 * 337.25085 * 12 11 8 14 14 C 1.38809 * 120.00095 * 157.24386 * 12 11 8 15 15 N 1.31614 * 120.00152 * 327.14174 * 14 12 11 16 16 Si 1.86804 * 119.99993 * 147.13582 * 14 12 11 17 17 H 1.48501 * 109.47143 * 180.02562 * 16 14 12 18 18 H 1.48494 * 109.46940 * 60.00158 * 16 14 12 19 19 H 1.48500 * 109.46880 * 300.00411 * 16 14 12 20 20 C 1.46928 * 118.74181 * 306.64549 * 11 8 7 21 21 H 1.09000 * 109.58598 * 173.13793 * 20 11 8 22 22 C 1.52994 * 109.58414 * 293.56848 * 20 11 8 23 23 C 1.52766 * 109.00428 * 53.30653 * 20 11 8 24 24 H 1.09001 * 109.46934 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47037 * 299.99862 * 1 2 3 26 26 H 1.08998 * 109.47263 * 60.00121 * 1 2 3 27 27 H 1.09001 * 109.49272 * 58.66366 * 7 5 3 28 28 H 1.09002 * 109.49629 * 298.57067 * 7 5 3 29 29 H 1.08997 * 109.47200 * 163.21497 * 10 8 7 30 30 H 1.08999 * 109.46530 * 283.21385 * 10 8 7 31 31 H 1.08994 * 109.46889 * 43.21117 * 10 8 7 32 32 H 0.97004 * 120.00200 * 355.24320 * 15 14 12 33 33 H 1.08999 * 109.47216 * 80.23773 * 22 20 11 34 34 H 1.08998 * 109.47038 * 200.23692 * 22 20 11 35 35 H 1.08996 * 109.47448 * 320.23690 * 22 20 11 36 36 H 1.09004 * 109.55805 * 185.55085 * 23 20 11 37 37 H 1.09003 * 109.35956 * 65.50348 * 23 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9562 0.7810 0.8894 7 6 4.0000 2.7426 -0.0011 8 6 5.5295 2.8190 0.0333 9 1 5.8459 3.8573 -0.0666 10 6 6.0449 2.2510 1.3572 11 7 6.0676 2.0304 -1.0836 12 6 6.9471 2.5892 -1.9722 13 1 6.9780 3.6612 -2.0997 14 6 7.7989 1.7777 -2.7090 15 7 8.2574 0.6597 -2.1874 16 14 8.2943 2.2724 -4.4409 17 1 9.2027 1.2441 -5.0087 18 1 8.9923 3.5825 -4.4009 19 1 7.0810 2.3837 -5.2900 20 6 5.6394 0.6329 -1.2326 21 1 6.0282 0.2293 -2.1675 22 6 6.1647 -0.1926 -0.0564 23 6 4.1128 0.5794 -1.2495 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.5909 3.2430 0.8766 28 1 3.6315 3.2305 -0.9035 29 1 7.1083 2.0291 1.2680 30 1 5.8916 2.9826 2.1505 31 1 5.5017 1.3368 1.5962 32 1 8.0565 0.4367 -1.2650 33 1 5.5197 -0.0427 0.8095 34 1 6.1699 -1.2484 -0.3271 35 1 7.1786 0.1253 0.1866 36 1 3.7842 -0.4599 -1.2605 37 1 3.7433 1.0877 -2.1402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599712904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:36 Heat of formation + Delta-G solvation = -67.305820 kcal Electronic energy + Delta-G solvation = -18811.399922 eV Core-core repulsion = 15975.541403 eV Total energy + Delta-G solvation = -2835.858520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52248 -38.50468 -36.30451 -33.55903 -32.18087 -30.54864 -28.66388 -27.73652 -25.34130 -24.48578 -22.89690 -20.98292 -20.56751 -18.39310 -17.46570 -17.15633 -16.51635 -15.93995 -14.58105 -14.27556 -14.03331 -13.58451 -13.40487 -13.17793 -12.90711 -12.81757 -12.24846 -12.07490 -11.96319 -11.69552 -11.43207 -10.86900 -10.73671 -10.68525 -10.62955 -10.32719 -10.18764 -10.05983 -9.94949 -9.80261 -9.41923 -9.30213 -8.26627 -6.91948 -6.09463 -3.12117 2.40953 2.89644 3.52223 3.56872 3.74019 4.60267 4.91312 5.08286 5.11059 5.14176 5.22368 5.27842 5.41281 5.48812 5.67537 5.82895 5.89566 5.99373 6.16631 6.23594 6.31354 6.38845 6.44321 6.49746 6.51938 6.60321 6.66811 6.71179 6.88080 7.08827 7.22136 7.27286 7.94112 8.04983 8.61981 9.15913 9.88192 10.32328 11.22375 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.007409 C = 0.007124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.124191 B = 3778.087014 C = 3929.612374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.514 6.514 5 C -0.074 4.074 6 H 0.107 0.893 7 C -0.109 4.109 8 C 0.169 3.831 9 H 0.068 0.932 10 C -0.173 4.173 11 N -0.587 5.587 12 C -0.357 4.357 13 H 0.058 0.942 14 C -0.018 4.018 15 N -0.910 5.910 16 Si 1.052 2.948 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.295 1.295 20 C 0.171 3.829 21 H 0.093 0.907 22 C -0.165 4.165 23 C -0.119 4.119 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.275 0.725 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.648 -2.168 5.342 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.402 6.402 5 C -0.093 4.093 6 H 0.125 0.875 7 C -0.148 4.148 8 C 0.062 3.938 9 H 0.086 0.914 10 C -0.232 4.232 11 N -0.309 5.309 12 C -0.485 4.485 13 H 0.076 0.924 14 C -0.221 4.221 15 N -0.551 5.551 16 Si 0.882 3.118 17 H -0.212 1.212 18 H -0.221 1.221 19 H -0.222 1.222 20 C 0.064 3.936 21 H 0.110 0.890 22 C -0.224 4.224 23 C -0.158 4.158 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.984 -2.326 3.961 10.990 hybrid contribution -1.176 0.590 1.427 1.941 sum -11.160 -1.736 5.388 12.513 Atomic orbital electron populations 1.23200 0.77269 1.03282 1.02238 1.86556 1.22742 1.34088 1.84219 1.24403 0.92641 0.80882 0.71285 1.90614 1.67395 1.36451 1.45704 1.21212 0.84920 1.00521 1.02624 0.87536 1.21928 0.98388 0.92370 1.02104 1.20484 0.89813 0.95922 0.87625 0.91411 1.22732 1.02084 1.00293 0.98042 1.44320 1.50316 1.08358 1.27869 1.19924 1.16390 0.93421 1.18800 0.92386 1.25618 0.94430 0.97072 1.05018 1.70813 1.39211 1.28018 1.17038 0.83710 0.75933 0.75270 0.76850 1.21241 1.22079 1.22212 1.20394 0.89089 0.85552 0.98559 0.88955 1.22703 1.01659 0.99031 0.98996 1.22007 0.99633 0.99112 0.95089 0.88404 0.92252 0.92129 0.92169 0.91367 0.92264 0.94419 0.92789 0.91188 0.93754 0.94063 0.91675 0.91645 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.31 10.44 -39.26 -0.41 -5.72 16 3 C 0.46 7.81 7.26 36.01 0.26 8.07 16 4 O -0.51 -9.63 15.73 -18.75 -0.29 -9.93 16 5 C -0.07 -1.26 2.28 -91.73 -0.21 -1.47 16 6 H 0.11 1.72 4.91 -51.93 -0.26 1.46 16 7 C -0.11 -1.98 4.13 -26.62 -0.11 -2.09 16 8 C 0.17 3.42 3.28 -67.60 -0.22 3.20 16 9 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 10 C -0.17 -3.11 8.00 37.16 0.30 -2.81 16 11 N -0.59 -13.88 2.41 -157.54 -0.38 -14.26 16 12 C -0.36 -9.65 9.45 -15.06 -0.14 -9.79 16 13 H 0.06 1.60 7.98 -52.48 -0.42 1.18 16 14 C -0.02 -0.50 4.49 -17.43 -0.08 -0.58 16 15 N -0.91 -26.13 12.40 55.49 0.69 -25.45 16 16 Si 1.05 24.85 30.03 -169.99 -5.10 19.75 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.17 3.74 2.29 -67.82 -0.16 3.58 16 21 H 0.09 2.34 6.20 -51.93 -0.32 2.01 16 22 C -0.16 -3.25 7.24 37.15 0.27 -2.98 16 23 C -0.12 -2.22 4.74 -26.83 -0.13 -2.34 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.06 1.01 8.07 -51.93 -0.42 0.60 16 28 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 29 H 0.06 1.19 7.58 -51.93 -0.39 0.79 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.90 3.89 -51.93 -0.20 0.70 16 32 H 0.28 7.74 4.93 -40.82 -0.20 7.54 16 33 H 0.04 0.77 4.03 -51.93 -0.21 0.56 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.44 5.72 -51.93 -0.30 1.14 16 36 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -29.94 282.30 -5.70 -35.64 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.30 Total: 1.50 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.85 Total: -5.79 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.31 Total: -39.71 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.70 Total: -15.65 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.94 -5.70 -35.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599712904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.665 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds