Wall clock time and date at job start Mon Mar 30 2020 04:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.32840 * 2 1 4 4 C 1.54790 * 110.31360 * 237.59184 * 2 1 3 5 5 C 1.54507 * 103.91504 * 217.11787 * 4 2 1 6 6 H 1.08999 * 110.50959 * 118.81151 * 5 4 2 7 7 C 1.50699 * 110.51232 * 241.39045 * 5 4 2 8 8 O 1.21279 * 120.00406 * 116.69098 * 7 5 4 9 9 N 1.34780 * 119.99563 * 296.68680 * 7 5 4 10 10 C 1.46499 * 120.00229 * 0.02562 * 9 7 5 11 11 C 1.46499 * 119.99546 * 180.02562 * 9 7 5 12 12 C 1.50703 * 109.47349 * 270.00192 * 11 9 7 13 13 H 1.08007 * 119.99972 * 0.02562 * 12 11 9 14 14 C 1.37872 * 120.00296 * 180.02562 * 12 11 9 15 15 N 1.31512 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00169 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46982 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47194 * 119.99521 * 16 14 12 19 19 H 1.48495 * 109.47123 * 239.99959 * 16 14 12 20 20 C 1.54481 * 104.18093 * 0.09906 * 5 4 2 21 21 H 1.08992 * 110.37504 * 264.96546 * 20 5 4 22 22 C 1.53010 * 110.37046 * 142.73966 * 20 5 4 23 23 O 1.44423 * 104.80574 * 23.91268 * 20 5 4 24 24 H 1.08995 * 109.47913 * 299.20576 * 1 2 3 25 25 H 1.09003 * 109.47345 * 59.21088 * 1 2 3 26 26 H 1.09007 * 109.47056 * 179.20119 * 1 2 3 27 27 H 1.09004 * 110.55851 * 98.53587 * 4 2 1 28 28 H 1.09004 * 110.60782 * 335.72899 * 4 2 1 29 29 H 1.09002 * 109.47391 * 89.99442 * 10 9 7 30 30 H 1.09001 * 109.46813 * 329.99499 * 10 9 7 31 31 H 1.09004 * 109.47041 * 209.99626 * 10 9 7 32 32 H 1.08993 * 109.47560 * 30.00104 * 11 9 7 33 33 H 1.09000 * 109.47209 * 150.00790 * 11 9 7 34 34 H 0.96993 * 120.00222 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.46807 * 59.99880 * 22 20 5 36 36 H 1.08998 * 109.46979 * 179.97438 * 22 20 5 37 37 H 1.08995 * 109.47109 * 300.00139 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0673 -0.7780 -1.2255 5 6 3.3178 -1.5063 -0.6842 6 1 3.1980 -2.5863 -0.7703 7 6 4.5527 -1.0530 -1.4195 8 8 5.4375 -0.4778 -0.8219 9 7 4.6737 -1.2869 -2.7413 10 6 3.6047 -1.9813 -3.4633 11 6 5.8744 -0.8467 -3.4560 12 6 5.6638 0.5511 -3.9787 13 1 4.7292 1.0607 -3.7963 14 6 6.6642 1.1793 -4.6897 15 7 7.8025 0.5590 -4.9114 16 14 6.4034 2.9121 -5.3369 17 1 5.0486 3.3847 -4.9543 18 1 7.4258 3.8174 -4.7538 19 1 6.5285 2.9118 -6.8166 20 6 3.3873 -1.0861 0.8008 21 1 4.0539 -0.2325 0.9228 22 6 3.8601 -2.2575 1.6642 23 8 2.0327 -0.7224 1.1452 24 1 -0.3635 0.5014 0.8969 25 1 -0.3634 0.5260 -0.8828 26 1 -0.3633 -1.0276 -0.0143 27 1 2.3423 -0.0901 -2.0252 28 1 1.3283 -1.4980 -1.5771 29 1 2.8894 -1.2518 -3.8431 30 1 3.0975 -2.6696 -2.7873 31 1 4.0320 -2.5391 -4.2967 32 1 6.7260 -0.8556 -2.7758 33 1 6.0684 -1.5210 -4.2902 34 1 8.5064 1.0010 -5.4112 35 1 4.8510 -2.5729 1.3375 36 1 3.9042 -1.9452 2.7075 37 1 3.1623 -3.0887 1.5625 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601013431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:23 Heat of formation + Delta-G solvation = -90.812124 kcal Electronic energy + Delta-G solvation = -18228.202374 eV Core-core repulsion = 15391.324545 eV Total energy + Delta-G solvation = -2836.877829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21444 -38.08831 -34.92451 -32.86152 -32.62415 -31.97441 -29.00271 -27.64090 -25.96444 -24.38703 -22.94372 -21.30179 -20.95234 -18.55041 -16.75637 -16.47653 -15.96449 -15.41793 -15.26168 -14.90000 -14.26979 -14.00623 -13.35030 -13.08806 -12.90228 -12.55820 -12.26224 -12.14312 -12.00207 -11.90239 -11.85281 -11.52511 -11.20946 -11.01801 -10.87300 -10.74702 -10.61490 -10.52770 -10.17370 -9.63948 -9.58380 -8.89221 -8.46202 -7.68589 -6.06871 -4.11619 3.27753 3.32116 3.36135 3.40519 3.80010 3.98878 4.42339 4.68695 4.71837 4.96645 5.06576 5.25856 5.26775 5.33326 5.40269 5.52933 5.56048 5.61267 5.68370 5.79006 5.88582 5.93872 6.00544 6.06393 6.11766 6.18695 6.23960 6.30527 6.96783 7.05191 7.40559 7.50682 7.89237 8.20376 8.36669 8.86627 9.04237 9.53561 11.01357 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.006632 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.218256 B = 4220.714638 C = 4542.320670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.070 0.930 4 C -0.140 4.140 5 C -0.141 4.141 6 H 0.101 0.899 7 C 0.513 3.487 8 O -0.539 6.539 9 N -0.600 5.600 10 C 0.085 3.915 11 C 0.244 3.756 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.085 3.915 21 H 0.090 0.910 22 C -0.141 4.141 23 O -0.373 6.373 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -5.639 6.792 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.088 0.912 4 C -0.178 4.178 5 C -0.162 4.162 6 H 0.119 0.881 7 C 0.299 3.701 8 O -0.417 6.417 9 N -0.331 5.331 10 C -0.059 4.059 11 C 0.125 3.875 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.209 1.209 20 C 0.027 3.973 21 H 0.107 0.893 22 C -0.198 4.198 23 O -0.293 6.293 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.538 -5.369 7.187 15.416 hybrid contribution 0.024 0.964 -0.830 1.273 sum -12.513 -4.404 6.357 14.710 Atomic orbital electron populations 1.21788 0.93295 1.02648 1.02328 1.23007 0.94983 0.95794 0.85006 0.91225 1.23087 0.95892 0.99928 0.98856 1.22725 0.94847 1.02060 0.96609 0.88056 1.20025 0.87494 0.80050 0.82574 1.90659 1.41942 1.42134 1.66967 1.48120 1.21193 1.56208 1.07618 1.21684 0.91095 0.96213 0.96928 1.19329 0.81777 0.94809 0.91587 1.21448 1.01002 0.99940 1.34011 0.92484 1.24938 0.94922 0.98163 0.96116 1.69937 1.05029 1.37700 1.40717 0.86446 0.78282 0.84358 0.78363 1.19825 1.20839 1.20924 1.22886 0.84349 0.98714 0.91320 0.89265 1.21759 1.01393 0.96828 0.99828 1.89081 1.27482 1.74530 1.38160 0.92006 0.91177 0.91916 0.89611 0.90030 0.93116 0.92586 0.91423 0.93822 0.94954 0.92740 0.90881 0.91919 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.53 37.16 0.35 -1.12 16 2 C 0.07 0.94 3.93 -25.79 -0.10 0.84 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -1.89 4.86 -25.00 -0.12 -2.01 16 5 C -0.14 -2.18 2.11 -90.20 -0.19 -2.37 16 6 H 0.10 1.36 7.13 -51.93 -0.37 0.99 16 7 C 0.51 10.62 6.88 -10.98 -0.08 10.55 16 8 O -0.54 -13.50 15.04 5.56 0.08 -13.41 16 9 N -0.60 -12.63 2.85 -182.95 -0.52 -13.15 16 10 C 0.08 1.33 9.16 59.85 0.55 1.88 16 11 C 0.24 6.38 5.20 -5.19 -0.03 6.35 16 12 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 13 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 16 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.08 1.33 3.26 -25.95 -0.08 1.25 16 21 H 0.09 1.63 6.93 -51.93 -0.36 1.27 16 22 C -0.14 -1.86 9.52 37.16 0.35 -1.50 16 23 O -0.37 -5.64 11.04 -35.23 -0.39 -6.03 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 27 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 28 H 0.08 0.89 7.87 -51.93 -0.41 0.49 16 29 H 0.05 0.76 7.64 -51.93 -0.40 0.36 16 30 H 0.06 0.69 6.24 -51.93 -0.32 0.37 16 31 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -32.61 301.48 -6.26 -38.87 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.93 Total: -2.06 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 0.23 Total: 0.27 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.21 Total: -39.03 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.31 Total: -19.45 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.61 -6.26 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.938 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds