Wall clock time and date at job start Mon Mar 30 2020 04:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.32840 * 2 1 4 4 C 1.54790 * 110.31360 * 237.59184 * 2 1 3 5 5 C 1.54507 * 103.91504 * 217.11787 * 4 2 1 6 6 H 1.08999 * 110.50959 * 118.81151 * 5 4 2 7 7 C 1.50699 * 110.51232 * 241.39045 * 5 4 2 8 8 O 1.21279 * 120.00406 * 116.69098 * 7 5 4 9 9 N 1.34780 * 119.99563 * 296.68680 * 7 5 4 10 10 C 1.46499 * 120.00229 * 0.02562 * 9 7 5 11 11 C 1.46499 * 119.99546 * 180.02562 * 9 7 5 12 12 C 1.50703 * 109.47349 * 270.00192 * 11 9 7 13 13 H 1.08007 * 119.99972 * 0.02562 * 12 11 9 14 14 C 1.37872 * 120.00296 * 180.02562 * 12 11 9 15 15 N 1.31512 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00169 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46982 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47194 * 119.99521 * 16 14 12 19 19 H 1.48495 * 109.47123 * 239.99959 * 16 14 12 20 20 C 1.54481 * 104.18093 * 0.09906 * 5 4 2 21 21 H 1.08992 * 110.37504 * 264.96546 * 20 5 4 22 22 C 1.53010 * 110.37046 * 142.73966 * 20 5 4 23 23 O 1.44423 * 104.80574 * 23.91268 * 20 5 4 24 24 H 1.08995 * 109.47913 * 299.20576 * 1 2 3 25 25 H 1.09003 * 109.47345 * 59.21088 * 1 2 3 26 26 H 1.09007 * 109.47056 * 179.20119 * 1 2 3 27 27 H 1.09004 * 110.55851 * 98.53587 * 4 2 1 28 28 H 1.09004 * 110.60782 * 335.72899 * 4 2 1 29 29 H 1.09002 * 109.47391 * 89.99442 * 10 9 7 30 30 H 1.09001 * 109.46813 * 329.99499 * 10 9 7 31 31 H 1.09004 * 109.47041 * 209.99626 * 10 9 7 32 32 H 1.08993 * 109.47560 * 30.00104 * 11 9 7 33 33 H 1.09000 * 109.47209 * 150.00790 * 11 9 7 34 34 H 0.96993 * 120.00222 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.46807 * 59.99880 * 22 20 5 36 36 H 1.08998 * 109.46979 * 179.97438 * 22 20 5 37 37 H 1.08995 * 109.47109 * 300.00139 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0673 -0.7780 -1.2255 5 6 3.3178 -1.5063 -0.6842 6 1 3.1980 -2.5863 -0.7703 7 6 4.5527 -1.0530 -1.4195 8 8 5.4375 -0.4778 -0.8219 9 7 4.6737 -1.2869 -2.7413 10 6 3.6047 -1.9813 -3.4633 11 6 5.8744 -0.8467 -3.4560 12 6 5.6638 0.5511 -3.9787 13 1 4.7292 1.0607 -3.7963 14 6 6.6642 1.1793 -4.6897 15 7 7.8025 0.5590 -4.9114 16 14 6.4034 2.9121 -5.3369 17 1 5.0486 3.3847 -4.9543 18 1 7.4258 3.8174 -4.7538 19 1 6.5285 2.9118 -6.8166 20 6 3.3873 -1.0861 0.8008 21 1 4.0539 -0.2325 0.9228 22 6 3.8601 -2.2575 1.6642 23 8 2.0327 -0.7224 1.1452 24 1 -0.3635 0.5014 0.8969 25 1 -0.3634 0.5260 -0.8828 26 1 -0.3633 -1.0276 -0.0143 27 1 2.3423 -0.0901 -2.0252 28 1 1.3283 -1.4980 -1.5771 29 1 2.8894 -1.2518 -3.8431 30 1 3.0975 -2.6696 -2.7873 31 1 4.0320 -2.5391 -4.2967 32 1 6.7260 -0.8556 -2.7758 33 1 6.0684 -1.5210 -4.2902 34 1 8.5064 1.0010 -5.4112 35 1 4.8510 -2.5729 1.3375 36 1 3.9042 -1.9452 2.7075 37 1 3.1623 -3.0887 1.5625 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601013431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:23 Heat of formation + Delta-G solvation = -112.994404 kcal Electronic energy + Delta-G solvation = -18229.164270 eV Core-core repulsion = 15391.324545 eV Total energy + Delta-G solvation = -2837.839725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58705 -39.55804 -36.69015 -34.85302 -33.68791 -33.36821 -30.28794 -29.31412 -27.45495 -25.84053 -24.60845 -22.54636 -22.15972 -20.09139 -18.72136 -18.12895 -17.44454 -16.77503 -16.60590 -16.49870 -15.82771 -15.57926 -14.62241 -14.45641 -14.27770 -13.92350 -13.75615 -13.49832 -13.42708 -13.13407 -12.98291 -12.85735 -12.78349 -12.64591 -12.49754 -12.23975 -12.16021 -11.81210 -11.70491 -11.64886 -10.80277 -10.67130 -10.54240 -9.46856 -8.25142 -6.39864 1.34167 1.36765 1.48142 1.74197 2.25306 2.39904 2.79637 3.04619 3.52220 3.58985 3.70274 3.93682 4.12506 4.20857 4.38759 4.42373 4.42874 4.57018 4.67273 4.72412 4.80274 4.86964 4.93800 4.98272 5.04150 5.07247 5.15051 5.19469 5.21160 5.31341 5.53518 5.80130 5.87880 6.03010 6.65923 6.73957 7.24680 7.41912 8.82311 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.006632 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.218256 B = 4220.714638 C = 4542.320670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.061 3.939 3 H 0.050 0.950 4 C -0.133 4.133 5 C -0.128 4.128 6 H 0.135 0.865 7 C 0.504 3.496 8 O -0.596 6.596 9 N -0.605 5.605 10 C 0.078 3.922 11 C 0.257 3.743 12 C -0.542 4.542 13 H 0.052 0.948 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.967 3.033 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 C 0.083 3.917 21 H 0.051 0.949 22 C -0.136 4.136 23 O -0.375 6.375 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.071 0.929 32 H -0.003 1.003 33 H 0.026 0.974 34 H 0.267 0.733 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.877 -6.229 6.416 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.004 3.996 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.150 4.150 6 H 0.153 0.847 7 C 0.293 3.707 8 O -0.477 6.477 9 N -0.336 5.336 10 C -0.064 4.064 11 C 0.136 3.864 12 C -0.580 4.580 13 H 0.071 0.929 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.192 1.192 20 C 0.024 3.976 21 H 0.069 0.931 22 C -0.193 4.193 23 O -0.295 6.295 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.374 -5.987 6.797 17.844 hybrid contribution 0.911 1.143 -0.687 1.615 sum -14.463 -4.844 6.110 16.431 Atomic orbital electron populations 1.21776 0.90358 1.03876 1.03288 1.23188 0.97221 0.94712 0.84511 0.93187 1.23130 0.95532 1.00231 0.98201 1.22718 0.92705 1.03958 0.95595 0.84685 1.20988 0.88492 0.78920 0.82329 1.90629 1.44350 1.44597 1.68132 1.48125 1.20965 1.56399 1.08089 1.22007 0.89787 0.96842 0.97730 1.18812 0.82853 0.94298 0.90453 1.21712 1.00993 1.01035 1.34274 0.92929 1.25859 0.94540 1.02499 0.96280 1.70049 1.05874 1.39581 1.41328 0.85378 0.78284 0.78846 0.78379 1.19102 1.20831 1.19227 1.22795 0.84273 0.98334 0.92157 0.93098 1.21731 1.01406 0.96520 0.99656 1.89086 1.26742 1.74595 1.39062 0.91803 0.89538 0.90504 0.91383 0.86046 0.92038 0.88359 0.91001 0.98471 0.95562 0.92359 0.91746 0.91264 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.53 71.98 0.69 -1.65 16 2 C 0.06 1.53 3.93 31.20 0.12 1.65 16 3 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.13 -3.23 4.86 31.72 0.15 -3.07 16 5 C -0.13 -3.75 2.11 -10.52 -0.02 -3.77 16 6 H 0.14 3.06 7.13 -2.39 -0.02 3.04 16 7 C 0.50 21.15 6.88 87.66 0.60 21.75 16 8 O -0.60 -31.41 15.04 -3.02 -0.05 -31.45 16 9 N -0.61 -25.56 2.85 -851.13 -2.43 -27.99 16 10 C 0.08 2.26 9.16 127.77 1.17 3.43 16 11 C 0.26 13.96 5.20 85.63 0.45 14.40 16 12 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 13 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 14 C 0.01 0.41 5.46 84.65 0.46 0.88 16 15 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 16 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C 0.08 2.54 3.26 31.10 0.10 2.64 16 21 H 0.05 1.96 6.93 -2.39 -0.02 1.94 16 22 C -0.14 -3.40 9.52 71.99 0.69 -2.71 16 23 O -0.37 -10.70 11.04 -148.98 -1.64 -12.35 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.13 8.13 -2.38 -0.02 1.12 16 27 H 0.07 1.93 7.00 -2.38 -0.02 1.91 16 28 H 0.12 2.01 7.87 -2.39 -0.02 1.99 16 29 H 0.06 1.67 7.64 -2.39 -0.02 1.65 16 30 H 0.10 2.00 6.24 -2.39 -0.01 1.99 16 31 H 0.07 2.02 7.89 -2.38 -0.02 2.00 16 32 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 33 H 0.03 1.43 7.89 -2.39 -0.02 1.42 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -74.20 301.48 3.88 -70.32 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.03 Total: 8.13 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 4.65 Total: 2.39 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.14 Total: -84.14 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.69 Total: -43.80 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.20 3.88 -70.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.675 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds