Wall clock time and date at job start Mon Mar 30 2020 04:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.82285 * 2 1 4 4 C 1.54384 * 109.83080 * 239.10940 * 2 1 3 5 5 C 1.55304 * 102.25492 * 219.03796 * 4 2 1 6 6 H 1.09002 * 111.12488 * 152.05572 * 5 4 2 7 7 N 1.46500 * 111.12640 * 276.17566 * 5 4 2 8 8 C 1.34776 * 120.00270 * 270.09808 * 7 5 4 9 9 O 1.21283 * 119.99698 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00508 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47508 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47291 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99678 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47186 * 59.99876 * 16 14 12 18 18 H 1.48500 * 109.46922 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47068 * 299.99718 * 16 14 12 20 20 C 1.54944 * 100.97800 * 34.11596 * 5 4 2 21 21 H 1.08996 * 110.31114 * 82.48962 * 20 5 4 22 22 C 1.53005 * 110.30859 * 204.65983 * 20 5 4 23 23 O 1.43240 * 109.90408 * 120.93626 * 2 1 3 24 24 H 1.09005 * 109.46785 * 180.88543 * 1 2 3 25 25 H 1.08995 * 109.47068 * 300.88796 * 1 2 3 26 26 H 1.08997 * 109.46827 * 60.88911 * 1 2 3 27 27 H 1.09006 * 110.84230 * 100.84917 * 4 2 1 28 28 H 1.08993 * 111.02705 * 337.31158 * 4 2 1 29 29 H 0.97004 * 119.99791 * 90.10453 * 7 5 4 30 30 H 1.09000 * 109.46944 * 300.00523 * 10 8 7 31 31 H 1.09002 * 109.46627 * 59.99915 * 10 8 7 32 32 H 1.09003 * 109.46428 * 300.00143 * 11 10 8 33 33 H 1.08996 * 109.47036 * 59.99649 * 11 10 8 34 34 H 0.96997 * 119.99832 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.47043 * 60.00073 * 22 20 5 36 36 H 1.09001 * 109.47136 * 179.97438 * 22 20 5 37 37 H 1.09001 * 109.46859 * 299.99670 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0538 -0.7456 -1.2463 5 6 3.2745 -1.5198 -0.6785 6 1 3.4594 -2.4321 -1.2455 7 7 4.4685 -0.6716 -0.6450 8 6 5.2959 -0.6303 -1.7081 9 8 5.0516 -1.2950 -2.6927 10 6 6.5245 0.2416 -1.6735 11 6 7.2834 0.1063 -2.9950 12 6 8.5123 0.9778 -2.9601 13 1 8.7300 1.5694 -2.0831 14 6 9.3587 1.0199 -4.0477 15 7 9.0939 0.2992 -5.1154 16 14 10.8817 2.1008 -4.0046 17 1 11.7585 1.6763 -2.8839 18 1 11.6190 1.9685 -5.2868 19 1 10.4785 3.5166 -3.8088 20 6 2.7788 -1.8431 0.7535 21 1 2.1456 -2.7302 0.7434 22 6 3.9684 -2.0489 1.6934 23 8 2.0177 -0.6924 1.1552 24 1 -0.3633 -1.0276 0.0159 25 1 -0.3633 0.5275 0.8819 26 1 -0.3633 0.5000 -0.8978 27 1 2.3657 -0.0409 -2.0172 28 1 1.3035 -1.4347 -1.6338 29 1 4.6638 -0.1398 0.1425 30 1 6.2285 1.2808 -1.5295 31 1 7.1681 -0.0701 -0.8508 32 1 7.5793 -0.9328 -3.1392 33 1 6.6395 0.4183 -3.8173 34 1 9.6892 0.3291 -5.8806 35 1 4.5704 -1.1407 1.7219 36 1 3.6046 -2.2749 2.6958 37 1 4.5776 -2.8775 1.3323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601767283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:26 Heat of formation + Delta-G solvation = -103.809821 kcal Electronic energy + Delta-G solvation = -17542.237415 eV Core-core repulsion = 14704.795963 eV Total energy + Delta-G solvation = -2837.441452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39268 -38.54418 -34.41189 -33.45323 -32.82262 -31.36740 -30.40384 -28.71130 -25.73716 -24.20284 -22.28410 -21.06403 -20.53097 -19.70311 -17.12126 -17.00389 -16.04763 -15.52263 -15.13458 -15.07742 -14.41757 -14.22824 -14.01547 -13.27342 -13.11380 -12.76098 -12.47611 -12.31630 -12.17719 -12.01831 -11.80934 -11.34416 -11.16569 -11.03393 -10.94684 -10.90146 -10.61564 -9.95900 -9.73089 -9.67304 -9.19581 -9.02738 -8.82342 -8.31883 -5.96135 -4.00669 3.19775 3.34560 3.38198 3.39891 3.43490 3.61337 4.42258 4.47504 4.50426 4.71371 4.94633 5.03428 5.14855 5.20687 5.36112 5.38761 5.42856 5.55098 5.57301 5.70195 5.82102 5.84700 5.94260 6.02923 6.05156 6.21815 6.24016 6.71385 6.88559 6.89901 7.73713 7.85586 7.86174 8.06779 8.38428 8.75439 9.07676 9.62921 11.14781 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043327 B = 0.004389 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.088680 B = 6377.708394 C = 6503.439678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.077 3.923 3 H 0.079 0.921 4 C -0.163 4.163 5 C 0.115 3.885 6 H 0.106 0.894 7 N -0.731 5.731 8 C 0.511 3.489 9 O -0.534 6.534 10 C -0.130 4.130 11 C 0.038 3.962 12 C -0.528 4.528 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.071 3.929 21 H 0.080 0.920 22 C -0.149 4.149 23 O -0.376 6.376 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.399 0.601 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 -2.456 12.937 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.097 0.903 4 C -0.202 4.202 5 C 0.008 3.992 6 H 0.123 0.877 7 N -0.386 5.386 8 C 0.300 3.700 9 O -0.409 6.409 10 C -0.170 4.170 11 C 0.000 4.000 12 C -0.566 4.566 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.013 3.987 21 H 0.098 0.902 22 C -0.207 4.207 23 O -0.296 6.296 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.235 0.765 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.031 -2.926 12.222 19.593 hybrid contribution 0.870 0.799 0.091 1.185 sum -14.161 -2.127 12.313 18.886 Atomic orbital electron populations 1.22131 0.94996 1.02446 1.02226 1.22709 0.94115 0.96424 0.84837 0.90262 1.23615 0.97798 1.00570 0.98222 1.22422 0.85598 0.95248 0.95900 0.87653 1.46173 1.24870 1.48037 1.19534 1.21610 0.84480 0.82267 0.81653 1.90668 1.74411 1.43426 1.32385 1.21872 0.92859 0.97927 1.04339 1.18889 0.93836 0.97867 0.89396 1.21188 1.07968 1.26495 1.00992 0.92657 1.25019 0.98039 0.95745 0.95513 1.69987 1.37748 1.40185 1.04952 0.86651 0.83070 0.80971 0.77229 1.20245 1.21280 1.20246 1.23247 0.92825 0.89639 0.93004 0.90206 1.21839 0.96743 1.02790 0.99301 1.88447 1.70444 1.40395 1.30329 0.92267 0.92079 0.91509 0.89422 0.89773 0.76520 0.90253 0.90200 0.95832 0.95865 0.92894 0.91667 0.91802 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.45 37.16 0.35 -1.04 16 2 C 0.08 0.80 4.15 -26.01 -0.11 0.70 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.16 -1.87 6.24 -24.78 -0.15 -2.02 16 5 C 0.11 1.43 3.14 -65.68 -0.21 1.22 16 6 H 0.11 1.45 7.64 -51.93 -0.40 1.05 16 7 N -0.73 -10.20 4.63 -51.63 -0.24 -10.44 16 8 C 0.51 9.65 7.83 -10.99 -0.09 9.56 16 9 O -0.53 -12.32 15.68 5.55 0.09 -12.23 16 10 C -0.13 -2.62 5.64 -27.89 -0.16 -2.78 16 11 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 12 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.07 0.74 3.94 -25.70 -0.10 0.63 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -1.41 9.20 37.16 0.34 -1.07 16 23 O -0.38 -4.34 10.71 -35.23 -0.38 -4.72 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 29 H 0.40 4.74 7.08 -40.82 -0.29 4.45 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 35 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -33.13 306.33 -6.89 -40.02 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.04 Total: 0.43 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.65 Total: -7.61 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.50 Total: -37.15 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.29 Total: -16.95 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.13 -6.89 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601767283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.792 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds